Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0000780

Physical Location & Seq

Genomic Coordinates Forward (+)

18244430 .. 18245014

Gene Structure 585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g24060.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGTCTTTCCCATTTCTCATCAATCTAGATTATTTTACACTCTCCGTATACCCATTCGAATTTCTCTTCTTCTTTCTTCAGCCAAGAACAGATTACCTAATTGAGTCAAGTTTTGAGTCTCTTTGTTTTGCTAAATATGTCTCTGGCTTCAGTCGGAATGGGTGCTCTCAGAACGCCATTCAAATGCCGTTTGATGCTGCAAAAATCAGCGCACGAGGAGAAAAAATGTTCCCACACCTCCCACCGAGACATCAATCCACACTGGACTCTCTACAACCACTCATCAAAAACATGGAAAAGTATAACACGAAAGAGGGACTGCAAAATTTTGCAATACAGATGGAGGAGGGAGCAAATATTGTTCAGAAGTGCAGCAAAGTTGGCCTGTGGAGAAAATACAAGTACTCCAACAAGCTTCATCAACTGGACAAATCTCTTCGGAGAGTGTTGATGTGCTTAAACTGCTGGGTACGAGGGATGCGAGGGAAAAGTTGGTTCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

NB-ARC RPW8

Protein Analysis

168

Amino Acids

19.61

Weight (kDa)

9.44

Isoelectric Point (pI)

52.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000780)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g32810 FvH4_5g32810 FvH4_5g32820 FvH4_5g32830
malus_domestica	MD02G1165800.v1.1 MD15G1022900.v1.1 MD15G1277300.v1.1
prunus_persica	Prupe.5G127600_v2.0.a1
pyrus_communis	pycom02g13140 pycom15g24060 pycom15g24100 pycom15g24130
rosa_chinensis	RchiOBHm_Chr2g0143661 RchiOBHm_Chr7g0230541 RchiOBHm_Chr7g0230551 RchiOBHm_Chr7g0230651 RchiOBHm_Chr7g0230701
rosa_laevigata	RLG00000001482 RLG00000001487 RLG00000002333 RLG00000020057
rosa_multiflora	Rmu_sc0002222.1_g000006 Rmu_sc0002799.1_g000008 Rmu_sc0002799.1_g000010 Rmu_sc0002799.1_g000011 Rmu_sc0002799.1_g000013 Rmu_sc0007883.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101570 Rroxscaffold_3G00229820 Rroxscaffold_3G00229840 Rroxscaffold_3G00229950 Rroxscaffold_3G00230000 Rroxscaffold_3G00230010 Rroxscaffold_3G00230020 Rroxscaffold_3G00230030
rosa_rugosa	Rorug02G0384500 Rorug07G0261400 Rorug07G0261500 Rorug07G0261600 Rorug07G0261700 Rorug07G0261900
rosa_samantha	Rh2AG169200 Rh2AG436600 Rh2BG444200 Rh2CG422900 Rh2DG177700 Rh2DG454500 Rh5BG005200 Rh7AG321600 Rh7AG410000 Rh7AG410100 Rh7AG412600 Rh7AG412700 Rh7AG412800 Rh7AG413700 Rh7AG413800 Rh7CG338100 Rh7CG430500 Rh7CG430600 Rh7CG430800 Rh7CG432500 Rh7CG432600 Rh7DG319700 Rh7DG408100 Rh7DG408200 Rh7DG408300 Rh7DG408400 Rh7DG408500 Rh7DG409300
rosa_wichuraiana	Rw7G034330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	48
AcsI	RAATTY	2 cut(s)	59, 325
AcuI	CTGAAG	2 cut(s)	62, 133
AfaI	GTAC	2 cut(s)	404, 471
AgsI	TTSAA	1 cut(s)	182
AluBI	AGCT	1 cut(s)	415
AluI	AGCT	1 cut(s)	415
Alw21I	GWGCWC	1 cut(s)	167
Alw26I	GTCTC	3 cut(s)	123, 145, 241
AoxI	GGCC	1 cut(s)	382
ApeKI	GCWGC	2 cut(s)	197, 372
ApoI	RAATTY	2 cut(s)	59, 325
AspLEI	GCGC	1 cut(s)	212
AsuII	TTCGAA	1 cut(s)	57
BauI	CACGAG	1 cut(s)	213
Bbv12I	GWGCWC	1 cut(s)	167
BbvI	GCAGC	2 cut(s)	184, 384
BccI	CCATC	1 cut(s)	334
BceAI	ACGGC	1 cut(s)	172
BcoDI	GTCTC	3 cut(s)	123, 145, 241
BfaI	CTAG	1 cut(s)	26
BisI	GCNGC	2 cut(s)	198, 373
BlsI	GCNGC	2 cut(s)	199, 374
BmcAI	AGTACT	1 cut(s)	404
BmiI	GGNNCC	1 cut(s)	497
BmsI	GCATC	2 cut(s)	184, 468
Bpu14I	TTCGAA	1 cut(s)	57
BsaXI	ACNNNNNCTCC	2 cut(s)	389, 419
Bse1I	ACTGG	2 cut(s)	267, 429
BseGI	GGATG	1 cut(s)	483
BseMII	CTCAG	1 cut(s)	182
BseNI	ACTGG	2 cut(s)	267, 429
BseRI	GAGGAG	2 cut(s)	231, 359
BseXI	GCAGC	2 cut(s)	184, 384
BseYI	CCCAGC	1 cut(s)	465
BsgI	GTGCAG	1 cut(s)	391
BshFI	GGCC	1 cut(s)	384
BsiHKAI	GWGCWC	1 cut(s)	167
BslFI	GGGAC	1 cut(s)	330
BsmAI	GTCTC	3 cut(s)	123, 145, 241
BsmFI	GGGAC	1 cut(s)	330
BsnI	GGCC	1 cut(s)	384
Bsp119I	TTCGAA	1 cut(s)	57
Bsp1286I	GDGCHC	1 cut(s)	167
BspANI	GGCC	1 cut(s)	384
BspCNI	CTCAG	1 cut(s)	181
BspLI	GGNNCC	1 cut(s)	497
BspT104I	TTCGAA	1 cut(s)	57
BsrI	ACTGG	2 cut(s)	267, 429
BssNAI	GTATAC	1 cut(s)	49
BssSI	CACGAG	1 cut(s)	213
Bst1107I	GTATAC	1 cut(s)	49
Bst2BI	CACGAG	1 cut(s)	213
Bst6I	CTCTTC	2 cut(s)	71, 441
BstBI	TTCGAA	1 cut(s)	57
BstDEI	CTNAG	1 cut(s)	168
BstF5I	GGATG	1 cut(s)	483
BstHHI	GCGC	1 cut(s)	212
BstMAI	GTCTC	3 cut(s)	123, 145, 241
BstMWI	GCNNNNNNNGC	2 cut(s)	381, 462
BstV1I	GCAGC	2 cut(s)	184, 384
BstZ17I	GTATAC	1 cut(s)	49
BsuRI	GGCC	1 cut(s)	384
BtsCI	GGATG	1 cut(s)	483
BtsIMutI	CAGTG	1 cut(s)	260
CfoI	GCGC	1 cut(s)	212
Csp6I	GTAC	2 cut(s)	403, 470
CviAII	CATG	1 cut(s)	292
CviJI	RGCY	4 cut(s)	82, 147, 384, 415
CviKI_1	RGCY	4 cut(s)	82, 147, 384, 415
CviQI	GTAC	2 cut(s)	403, 470
DdeI	CTNAG	1 cut(s)	168
Eam1104I	CTCTTC	2 cut(s)	71, 441
EarI	CTCTTC	2 cut(s)	71, 441
Eco57I	CTGAAG	2 cut(s)	62, 133
FaeI	CATG	1 cut(s)	295
FaiI	YATR	4 cut(s)	49, 138, 293, 303
FaqI	GGGAC	1 cut(s)	330
FatI	CATG	1 cut(s)	291
FblI	GTMKAC	1 cut(s)	48
Fnu4HI	GCNGC	2 cut(s)	198, 373
FokI	GGATG	1 cut(s)	490
Fsp4HI	GCNGC	2 cut(s)	198, 373
FspBI	CTAG	1 cut(s)	26
GlaI	GCGC	1 cut(s)	211
GluI	GCNGC	2 cut(s)	198, 373
GsaI	CCCAGC	1 cut(s)	469
HaeIII	GGCC	1 cut(s)	384
HhaI	GCGC	1 cut(s)	212
Hin1II	CATG	1 cut(s)	295
Hin6I	GCGC	1 cut(s)	210
HinP1I	GCGC	1 cut(s)	210
HindIII	AAGCTT	1 cut(s)	413
HinfI	GANTC	3 cut(s)	104, 116, 266
Hpy166II	GTNNAC	1 cut(s)	49
Hpy188I	TCNGA	4 cut(s)	156, 171, 366, 441
Hpy188III	TCNNGA	1 cut(s)	26
Hpy8I	GTNNAC	1 cut(s)	49
HpyCH4V	TGCA	4 cut(s)	200, 322, 332, 372
HpyF10VI	GCNNNNNNNGC	2 cut(s)	381, 462
HpyF3I	CTNAG	1 cut(s)	168
Hsp92II	CATG	1 cut(s)	295
HspAI	GCGC	1 cut(s)	210
LmnI	GCTCC	1 cut(s)	350
LpnPI	CCDG	5 cut(s)	129, 248, 398, 410, 451
Lsp1109I	GCAGC	2 cut(s)	184, 384
LweI	GCATC	2 cut(s)	184, 468
MaeI	CTAG	1 cut(s)	26
MboII	GAAGA	4 cut(s)	58, 61, 68, 428
MhlI	GDGCHC	1 cut(s)	167
MluCI	AATT	3 cut(s)	59, 99, 325
MlyI	GAGTC	3 cut(s)	113, 125, 260
MmeI	TCCRAC	2 cut(s)	134, 432
MnlI	CCTC	7 cut(s)	209, 248, 307, 337, 340, 467, 476
MseI	TTAA	1 cut(s)	458
MslI	CAYNNNNRTG	1 cut(s)	182
MwoI	GCNNNNNNNGC	2 cut(s)	381, 462
NlaIII	CATG	1 cut(s)	295
NlaIV	GGNNCC	1 cut(s)	497
NspV	TTCGAA	1 cut(s)	57
PcsI	WCGNNNNNNNCGW	1 cut(s)	478
PkrI	GCNGC	2 cut(s)	199, 374
PleI	GAGTC	3 cut(s)	112, 124, 260
PpsI	GAGTC	3 cut(s)	112, 124, 260
PspFI	CCCAGC	1 cut(s)	465
PspN4I	GGNNCC	1 cut(s)	497
RsaI	GTAC	2 cut(s)	404, 471
RsaNI	GTAC	2 cut(s)	403, 470
RseI	CAYNNNNRTG	1 cut(s)	182
SaqAI	TTAA	1 cut(s)	458
SatI	GCNGC	2 cut(s)	198, 373
ScaI	AGTACT	1 cut(s)	404
SchI	GAGTC	3 cut(s)	113, 125, 260
SduI	GDGCHC	1 cut(s)	167
SetI	ASST	3 cut(s)	99, 240, 417
SfaNI	GCATC	2 cut(s)	184, 468
SfuI	TTCGAA	1 cut(s)	57
SmiMI	CAYNNNNRTG	1 cut(s)	182
Sse9I	AATT	3 cut(s)	59, 99, 325
SspI	AATATT	1 cut(s)	358
SspMI	CTAG	1 cut(s)	26
TaqI	TCGA	1 cut(s)	57
TasI	AATT	3 cut(s)	59, 99, 325
TatI	WGTACW	1 cut(s)	402
Tru1I	TTAA	1 cut(s)	458
Tru9I	TTAA	1 cut(s)	458
TscAI	CASTG	1 cut(s)	267
TseI	GCWGC	2 cut(s)	197, 372
TspDTI	ATGAA	1 cut(s)	407
TspGWI	ACGGA	1 cut(s)	34
TspRI	CASTG	1 cut(s)	267
XapI	RAATTY	2 cut(s)	59, 325
XbaI	TCTAGA	1 cut(s)	25
XmiI	GTMKAC	1 cut(s)	48
XspI	CTAG	1 cut(s)	26
ZrmI	AGTACT	1 cut(s)	404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.