Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000780

Physical Location & Seq

Genomic Coordinates Forward (+)

54094329 .. 54094748

Gene Structure 420 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20659

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGCTCGACAGCGTTATGGCAGTGATGGAGAAGATGATCATGTTCAAGGACCACGTCAGAGATGTGAAACTGACGCTCGAGTGCTTGAAACCAGTGATCCACGAGATAGCGGAATACAACAAGGTGTTGAATCAACCGATGGAGGAATTACAGGATTTAAAGGCAAAACTGGAGGAGGGCGAAGATTTGGTCCGAAAGTGCTCCAAGGTTGGTCCCTGGAGTTTCTGCAAAAGGTACAGATACACCAACCAGCTTGATCAACTGGACATATCGCTACACTCACTCTTGCATGTACTGGAACTGCAGAAGACTAGGGATCTCAGGGAGACCTTGGTTACAGTCAGGAACATAGAGAACGTCGTCCGGCGAATTGAAGGAAATATTTCTGCCATGCAAATTAGTCAATCTGTAACTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

NB-ARC RPW8

Protein Analysis

139

Amino Acids

16.26

Weight (kDa)

6.1

Isoelectric Point (pI)

49.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	2 - 117	3.9e-23	Arabidopsis broad-spectrum mildew resistance protein RPW8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000780)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g32810 FvH4_5g32810 FvH4_5g32820 FvH4_5g32830
malus_domestica	MD02G1165800.v1.1 MD15G1022900.v1.1 MD15G1277300.v1.1
prunus_persica	Prupe.5G127600_v2.0.a1
pyrus_communis	pycom02g13140 pycom15g24060 pycom15g24100 pycom15g24130
rosa_chinensis	RchiOBHm_Chr2g0143661 RchiOBHm_Chr7g0230541 RchiOBHm_Chr7g0230551 RchiOBHm_Chr7g0230651 RchiOBHm_Chr7g0230701
rosa_laevigata	RLG00000001482 RLG00000001487 RLG00000002333 RLG00000020057
rosa_multiflora	Rmu_sc0002222.1_g000006 Rmu_sc0002799.1_g000008 Rmu_sc0002799.1_g000010 Rmu_sc0002799.1_g000011 Rmu_sc0002799.1_g000013 Rmu_sc0007883.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101570 Rroxscaffold_3G00229820 Rroxscaffold_3G00229840 Rroxscaffold_3G00229950 Rroxscaffold_3G00230000 Rroxscaffold_3G00230010 Rroxscaffold_3G00230020 Rroxscaffold_3G00230030
rosa_rugosa	Rorug02G0384500 Rorug07G0261400 Rorug07G0261500 Rorug07G0261600 Rorug07G0261700 Rorug07G0261900
rosa_samantha	Rh2AG169200 Rh2AG436600 Rh2BG444200 Rh2CG422900 Rh2DG177700 Rh2DG454500 Rh5BG005200 Rh7AG321600 Rh7AG410000 Rh7AG410100 Rh7AG412600 Rh7AG412700 Rh7AG412800 Rh7AG413700 Rh7AG413800 Rh7CG338100 Rh7CG430500 Rh7CG430600 Rh7CG430800 Rh7CG432500 Rh7CG432600 Rh7DG319700 Rh7DG408100 Rh7DG408200 Rh7DG408300 Rh7DG408400 Rh7DG408500 Rh7DG409300
rosa_wichuraiana	Rw7G034330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	110
AclWI	GGATC	2 cut(s)	91, 324
AfaI	GTAC	2 cut(s)	236, 294
AgsI	TTSAA	4 cut(s)	46, 88, 130, 374
AjiI	CACGTC	1 cut(s)	55
AjnI	CCWGG	1 cut(s)	215
AluBI	AGCT	1 cut(s)	253
AluI	AGCT	1 cut(s)	253
Alw21I	GWGCWC	1 cut(s)	203
Alw26I	GTCTC	1 cut(s)	320
AlwI	GGATC	2 cut(s)	91, 324
Ama87I	CYCGRG	1 cut(s)	77
ArsI	GACNNNNNNTTYG	2 cut(s)	174, 206
Asp700I	GAANNNNTTC	1 cut(s)	382
AspS9I	GGNCC	3 cut(s)	49, 190, 212
AvaI	CYCGRG	1 cut(s)	77
AvaII	GGWCC	3 cut(s)	49, 190, 212
BauI	CACGAG	1 cut(s)	101
BbsI	GAAGAC	1 cut(s)	314
Bbv12I	GWGCWC	1 cut(s)	203
BccI	CCATC	2 cut(s)	19, 133
BciT130I	CCWGG	1 cut(s)	217
BclI	TGATCA	2 cut(s)	36, 256
BcoDI	GTCTC	1 cut(s)	320
BfaI	CTAG	1 cut(s)	312
BfmI	CTRYAG	1 cut(s)	302
Bme1390I	CCNGG	1 cut(s)	217
Bme18I	GGWCC	3 cut(s)	49, 190, 212
BmeT110I	CYCGRG	1 cut(s)	77
BmgBI	CACGTC	1 cut(s)	55
BmgT120I	GGNCC	3 cut(s)	49, 190, 212
BmiI	GGNNCC	1 cut(s)	214
BmrFI	CCNGG	1 cut(s)	217
BpiI	GAAGAC	1 cut(s)	314
BpmI	CTGGAG	2 cut(s)	191, 238
BsaI	GGTCTC	1 cut(s)	320
BsaJI	CCNNGG	3 cut(s)	204, 215, 330
Bse1I	ACTGG	4 cut(s)	92, 174, 267, 300
BseBI	CCWGG	1 cut(s)	217
BseDI	CCNNGG	3 cut(s)	204, 215, 330
BseMII	CTCAG	1 cut(s)	334
BseNI	ACTGG	4 cut(s)	92, 174, 267, 300
BseRI	GAGGAG	1 cut(s)	188
BsiHKAI	GWGCWC	1 cut(s)	203
BsiHKCI	CYCGRG	1 cut(s)	77
BsiSI	CCGG	1 cut(s)	364
BslFI	GGGAC	1 cut(s)	198
BsmAI	GTCTC	1 cut(s)	320
BsmFI	GGGAC	1 cut(s)	198
Bso31I	GGTCTC	1 cut(s)	320
BsoBI	CYCGRG	1 cut(s)	77
Bsp1286I	GDGCHC	1 cut(s)	203
Bsp143I	GATC	4 cut(s)	36, 96, 256, 316
BspACI	CCGC	1 cut(s)	110
BspCNI	CTCAG	1 cut(s)	333
BspLI	GGNNCC	1 cut(s)	214
BspMAI	CTGCAG	1 cut(s)	306
BspPI	GGATC	2 cut(s)	91, 324
BspTNI	GGTCTC	1 cut(s)	320
BsrI	ACTGG	4 cut(s)	92, 174, 267, 300
BssECI	CCNNGG	3 cut(s)	204, 215, 330
BssMI	GATC	4 cut(s)	36, 96, 256, 316
BssSI	CACGAG	1 cut(s)	101
BssT1I	CCWWGG	2 cut(s)	204, 330
Bst2BI	CACGAG	1 cut(s)	101
Bst2UI	CCWGG	1 cut(s)	217
Bst4CI	ACNGT	1 cut(s)	340
BstDEI	CTNAG	1 cut(s)	320
BstKTI	GATC	4 cut(s)	39, 99, 259, 319
BstMAI	GTCTC	1 cut(s)	320
BstMBI	GATC	4 cut(s)	36, 96, 256, 316
BstNI	CCWGG	1 cut(s)	217
BstNSI	RCATGY	1 cut(s)	293
BstSCI	CCNGG	1 cut(s)	215
BstSFI	CTRYAG	1 cut(s)	302
BstV2I	GAAGAC	1 cut(s)	314
BstX2I	RGATCY	1 cut(s)	316
BstYI	RGATCY	1 cut(s)	316
BtrI	CACGTC	1 cut(s)	55
BtsI	GCAGTG	1 cut(s)	27
BtsIMutI	CAGTG	2 cut(s)	27, 99
Cfr13I	GGNCC	3 cut(s)	49, 190, 212
CseI	GACGC	1 cut(s)	82
Csp6I	GTAC	2 cut(s)	235, 293
CviAII	CATG	3 cut(s)	40, 290, 391
CviJI	RGCY	1 cut(s)	253
CviKI_1	RGCY	1 cut(s)	253
CviQI	GTAC	2 cut(s)	235, 293
DdeI	CTNAG	1 cut(s)	320
DpnI	GATC	4 cut(s)	38, 98, 258, 318
DpnII	GATC	4 cut(s)	36, 96, 256, 316
DraI	TTTAAA	1 cut(s)	159
Eco130I	CCWWGG	2 cut(s)	204, 330
Eco31I	GGTCTC	1 cut(s)	320
Eco47I	GGWCC	3 cut(s)	49, 190, 212
Eco88I	CYCGRG	1 cut(s)	77
EcoRII	CCWGG	1 cut(s)	215
EcoT14I	CCWWGG	2 cut(s)	204, 330
ErhI	CCWWGG	2 cut(s)	204, 330
FaeI	CATG	3 cut(s)	43, 293, 394
FaiI	YATR	6 cut(s)	17, 41, 269, 291, 350, 392
FaqI	GGGAC	1 cut(s)	198
FatI	CATG	3 cut(s)	39, 289, 390
FbaI	TGATCA	2 cut(s)	36, 256
FspBI	CTAG	1 cut(s)	312
GsuI	CTGGAG	2 cut(s)	191, 238
HapII	CCGG	1 cut(s)	364
HgaI	GACGC	1 cut(s)	82
Hin1II	CATG	3 cut(s)	43, 293, 394
HinfI	GANTC	1 cut(s)	130
HpaII	CCGG	1 cut(s)	364
Hpy188I	TCNGA	2 cut(s)	59, 194
Hpy188III	TCNNGA	1 cut(s)	343
Hpy99I	CGWCG	1 cut(s)	362
HpyAV	CCTTC	1 cut(s)	368
HpyCH4III	ACNGT	1 cut(s)	340
HpyCH4IV	ACGT	2 cut(s)	54, 357
HpyCH4V	TGCA	4 cut(s)	228, 289, 304, 394
HpyF3I	CTNAG	1 cut(s)	320
HpySE526I	ACGT	2 cut(s)	54, 357
Hsp92II	CATG	3 cut(s)	43, 293, 394
Ksp22I	TGATCA	2 cut(s)	36, 256
Kzo9I	GATC	4 cut(s)	36, 96, 256, 316
LmnI	GCTCC	1 cut(s)	206
MaeI	CTAG	1 cut(s)	312
MaeII	ACGT	2 cut(s)	54, 357
MaeIII	GTNAC	2 cut(s)	334, 409
MalI	GATC	4 cut(s)	38, 98, 258, 318
MboI	GATC	4 cut(s)	36, 96, 256, 316
MboII	GAAGA	3 cut(s)	43, 194, 319
MflI	RGATCY	1 cut(s)	316
MhlI	GDGCHC	1 cut(s)	203
MluCI	AATT	3 cut(s)	146, 369, 396
MnlI	CCTC	3 cut(s)	136, 166, 169
MroXI	GAANNNNTTC	1 cut(s)	382
MseI	TTAA	1 cut(s)	158
MspI	CCGG	1 cut(s)	364
MspR9I	CCNGG	1 cut(s)	217
MvaI	CCWGG	1 cut(s)	217
NdeII	GATC	4 cut(s)	36, 96, 256, 316
NlaIII	CATG	3 cut(s)	43, 293, 394
NlaIV	GGNNCC	1 cut(s)	214
NspI	RCATGY	1 cut(s)	293
PaeR7I	CTCGAG	1 cut(s)	77
PdmI	GAANNNNTTC	1 cut(s)	382
PfeI	GAWTC	1 cut(s)	130
PflFI	GACNNNGTC	1 cut(s)	53
Psp6I	CCWGG	1 cut(s)	215
PspGI	CCWGG	1 cut(s)	215
PspN4I	GGNNCC	1 cut(s)	214
PspPI	GGNCC	3 cut(s)	49, 190, 212
PspXI	VCTCGAGB	1 cut(s)	77
PstI	CTGCAG	1 cut(s)	306
PsuI	RGATCY	1 cut(s)	316
PsyI	GACNNNGTC	1 cut(s)	53
RsaI	GTAC	2 cut(s)	236, 294
RsaNI	GTAC	2 cut(s)	235, 293
SaqAI	TTAA	1 cut(s)	158
Sau3AI	GATC	4 cut(s)	36, 96, 256, 316
Sau96I	GGNCC	3 cut(s)	49, 190, 212
ScrFI	CCNGG	1 cut(s)	217
SduI	GDGCHC	1 cut(s)	203
SetI	ASST	7 cut(s)	57, 126, 210, 236, 255, 332, 360
SfcI	CTRYAG	1 cut(s)	302
Sfr274I	CTCGAG	1 cut(s)	77
SinI	GGWCC	3 cut(s)	49, 190, 212
SlaI	CTCGAG	1 cut(s)	77
SmlI	CTYRAG	1 cut(s)	77
SmoI	CTYRAG	1 cut(s)	77
Sse9I	AATT	3 cut(s)	146, 369, 396
SsiI	CCGC	1 cut(s)	110
SspI	AATATT	1 cut(s)	382
SspMI	CTAG	1 cut(s)	312
StyD4I	CCNGG	1 cut(s)	215
StyI	CCWWGG	2 cut(s)	204, 330
TaaI	ACNGT	1 cut(s)	340
TaiI	ACGT	2 cut(s)	57, 360
TaqI	TCGA	2 cut(s)	6, 78
TasI	AATT	3 cut(s)	146, 369, 396
TatI	WGTACW	1 cut(s)	292
TfiI	GAWTC	1 cut(s)	130
Tru1I	TTAA	1 cut(s)	158
Tru9I	TTAA	1 cut(s)	158
TscAI	CASTG	2 cut(s)	27, 99
TspRI	CASTG	2 cut(s)	27, 99
Tth111I	GACNNNGTC	1 cut(s)	53
VpaK11BI	GGWCC	3 cut(s)	49, 190, 212
XceI	RCATGY	1 cut(s)	293
XhoI	CTCGAG	1 cut(s)	77
XmnI	GAANNNNTTC	1 cut(s)	382
XspI	CTAG	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.