Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0000780

Physical Location & Seq

Genomic Coordinates Forward (+)

38059787 .. 38060703

Gene Structure 917 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG319700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGTTGCAAGAGATAAGGGACGTGAAGGAGATATTGGATCTGTCGAGGAAAAGCCGCAAGGAGCTTGAAGAAGTGAAGGAGGCACAGTTGAGTATGCACAAGTTACTGCAGCAGATAGCAGCTGGAGTAGTTGTAATGGAAGAGGCCTCAACTTCGGCTGCTGCAGGAGGAGGTGCTATTGAGATGGTGCCGAATCAAAATGAAGGGAATGGCGGCATTCAAGTGGCATCATTAGATGGAGGGACAGGGACTGCTCTAGGAGCAATATTTGGGATGCTACTTGAACTCGTTATAGAAGTGAAGGACAAGAATGTGATGTTTAAGCCTCCGCTCCAAGATCTCAAATCCACTTTAGAATCCTTAAAACCATTTGTCGAGGAGATGGCACAGCACACTATGCCAAAAAAGCTATCAGACAACAGAGTTCAGACGACAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

146

Amino Acids

15.85

Weight (kDa)

5.03

Isoelectric Point (pI)

47.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	83 - 130	3.2e-12	Arabidopsis broad-spectrum mildew resistance protein RPW8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0000780)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g32810 FvH4_5g32810 FvH4_5g32820 FvH4_5g32830
malus_domestica	MD02G1165800.v1.1 MD15G1022900.v1.1 MD15G1277300.v1.1
prunus_persica	Prupe.5G127600_v2.0.a1
pyrus_communis	pycom02g13140 pycom15g24060 pycom15g24100 pycom15g24130
rosa_chinensis	RchiOBHm_Chr2g0143661 RchiOBHm_Chr7g0230541 RchiOBHm_Chr7g0230551 RchiOBHm_Chr7g0230651 RchiOBHm_Chr7g0230701
rosa_laevigata	RLG00000001482 RLG00000001487 RLG00000002333 RLG00000020057
rosa_multiflora	Rmu_sc0002222.1_g000006 Rmu_sc0002799.1_g000008 Rmu_sc0002799.1_g000010 Rmu_sc0002799.1_g000011 Rmu_sc0002799.1_g000013 Rmu_sc0007883.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101570 Rroxscaffold_3G00229820 Rroxscaffold_3G00229840 Rroxscaffold_3G00229950 Rroxscaffold_3G00230000 Rroxscaffold_3G00230010 Rroxscaffold_3G00230020 Rroxscaffold_3G00230030
rosa_rugosa	Rorug02G0384500 Rorug07G0261400 Rorug07G0261500 Rorug07G0261600 Rorug07G0261700 Rorug07G0261900
rosa_samantha	Rh2AG169200 Rh2AG436600 Rh2BG444200 Rh2CG422900 Rh2DG177700 Rh2DG454500 Rh5BG005200 Rh7AG321600 Rh7AG410000 Rh7AG410100 Rh7AG412600 Rh7AG412700 Rh7AG412800 Rh7AG413700 Rh7AG413800 Rh7CG338100 Rh7CG430500 Rh7CG430600 Rh7CG430800 Rh7CG432500 Rh7CG432600 Rh7DG319700 Rh7DG408100 Rh7DG408200 Rh7DG408300 Rh7DG408400 Rh7DG408500 Rh7DG409300
rosa_wichuraiana	Rw7G034330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	187
AccBSI	CCGCTC	1 cut(s)	331
AciI	CCGC	3 cut(s)	55, 213, 329
AclWI	GGATC	1 cut(s)	45
AgsI	TTSAA	3 cut(s)	68, 221, 284
AjiI	CACGTC	1 cut(s)	22
AjuI	GAANNNNNNNTTGG	2 cut(s)	17, 49
AluBI	AGCT	3 cut(s)	64, 122, 409
AluI	AGCT	3 cut(s)	64, 122, 409
AlwI	GGATC	1 cut(s)	45
AlwNI	CAGNNNCTG	1 cut(s)	251
AoxI	GGCC	1 cut(s)	144
ApeKI	GCWGC	4 cut(s)	109, 119, 158, 161
BanI	GGYRCC	1 cut(s)	187
BbvI	GCAGC	4 cut(s)	121, 131, 145, 148
BccI	CCATC	3 cut(s)	178, 230, 376
BfaI	CTAG	1 cut(s)	257
BfmI	CTRYAG	2 cut(s)	107, 162
BglII	AGATCT	1 cut(s)	337
BisI	GCNGC	6 cut(s)	55, 110, 120, 159, 162, 214
BlsI	GCNGC	6 cut(s)	56, 111, 121, 160, 163, 215
BmgBI	CACGTC	1 cut(s)	22
BmiI	GGNNCC	1 cut(s)	189
BmsI	GCATC	2 cut(s)	236, 264
BpmI	CTGGAG	1 cut(s)	144
BsaXI	ACNNNNNCTCC	4 cut(s)	71, 101, 117, 147
BseGI	GGATG	1 cut(s)	279
BseRI	GAGGAG	2 cut(s)	183, 392
BseXI	GCAGC	4 cut(s)	121, 131, 145, 148
BshFI	GGCC	1 cut(s)	146
BshNI	GGYRCC	1 cut(s)	187
BslFI	GGGAC	3 cut(s)	32, 256, 262
BsmFI	GGGAC	3 cut(s)	32, 256, 262
BsmI	GAATGC	1 cut(s)	216
BsnI	GGCC	1 cut(s)	146
Bsp143I	GATC	2 cut(s)	37, 337
BspACI	CCGC	3 cut(s)	55, 213, 329
BspANI	GGCC	1 cut(s)	146
BspLI	GGNNCC	1 cut(s)	189
BspMAI	CTGCAG	2 cut(s)	111, 166
BspPI	GGATC	1 cut(s)	45
BspT107I	GGYRCC	1 cut(s)	187
BsrBI	CCGCTC	1 cut(s)	331
BssMI	GATC	2 cut(s)	37, 337
Bst4CI	ACNGT	1 cut(s)	87
Bst6I	CTCTTC	1 cut(s)	135
BstAPI	GCANNNNNTGC	1 cut(s)	397
BstF5I	GGATG	1 cut(s)	279
BstKTI	GATC	2 cut(s)	40, 340
BstMBI	GATC	2 cut(s)	37, 337
BstMWI	GCNNNNNNNGC	3 cut(s)	260, 397, 406
BstSFI	CTRYAG	2 cut(s)	107, 162
BstV1I	GCAGC	4 cut(s)	121, 131, 145, 148
BstX2I	RGATCY	2 cut(s)	37, 337
BstYI	RGATCY	2 cut(s)	37, 337
BsuRI	GGCC	1 cut(s)	146
BtrI	CACGTC	1 cut(s)	22
BtsCI	GGATG	1 cut(s)	279
CaiI	CAGNNNCTG	1 cut(s)	251
CviJI	RGCY	7 cut(s)	54, 64, 122, 146, 158, 325, 409
CviKI_1	RGCY	7 cut(s)	54, 64, 122, 146, 158, 325, 409
DpnI	GATC	2 cut(s)	39, 339
DpnII	GATC	2 cut(s)	37, 337
Eam1104I	CTCTTC	1 cut(s)	135
EarI	CTCTTC	1 cut(s)	135
Eco147I	AGGCCT	1 cut(s)	146
FaiI	YATR	3 cut(s)	95, 293, 398
FaqI	GGGAC	3 cut(s)	32, 256, 262
Fnu4HI	GCNGC	6 cut(s)	55, 110, 120, 159, 162, 214
FokI	GGATG	1 cut(s)	286
Fsp4HI	GCNGC	6 cut(s)	55, 110, 120, 159, 162, 214
FspBI	CTAG	1 cut(s)	257
GluI	GCNGC	6 cut(s)	55, 110, 120, 159, 162, 214
GsuI	CTGGAG	1 cut(s)	144
HaeIII	GGCC	1 cut(s)	146
HinfI	GANTC	2 cut(s)	193, 356
Hpy188I	TCNGA	2 cut(s)	415, 429
HpyAV	CCTTC	4 cut(s)	19, 70, 197, 295
HpyCH4III	ACNGT	1 cut(s)	87
HpyCH4IV	ACGT	1 cut(s)	21
HpyCH4V	TGCA	4 cut(s)	7, 97, 109, 164
HpyF10VI	GCNNNNNNNGC	3 cut(s)	260, 397, 406
HpySE526I	ACGT	1 cut(s)	21
Kzo9I	GATC	2 cut(s)	37, 337
LmnI	GCTCC	3 cut(s)	61, 260, 336
LpnPI	CCDG	3 cut(s)	108, 150, 231
Lsp1109I	GCAGC	4 cut(s)	121, 131, 145, 148
LweI	GCATC	2 cut(s)	236, 264
MaeI	CTAG	1 cut(s)	257
MaeII	ACGT	1 cut(s)	21
MaeIII	GTNAC	1 cut(s)	102
MalI	GATC	2 cut(s)	39, 339
MbiI	CCGCTC	1 cut(s)	331
MboI	GATC	2 cut(s)	37, 337
MboII	GAAGA	2 cut(s)	80, 152
MflI	RGATCY	2 cut(s)	37, 337
MnlI	CCTC	9 cut(s)	39, 73, 136, 157, 161, 164, 233, 336, 370
MseI	TTAA	2 cut(s)	321, 362
MslI	CAYNNNNRTG	1 cut(s)	221
MspA1I	CMGCKG	1 cut(s)	122
Mva1269I	GAATGC	1 cut(s)	216
MwoI	GCNNNNNNNGC	3 cut(s)	260, 397, 406
NdeII	GATC	2 cut(s)	37, 337
NlaIV	GGNNCC	1 cut(s)	189
PceI	AGGCCT	1 cut(s)	146
PctI	GAATGC	1 cut(s)	216
PfeI	GAWTC	2 cut(s)	193, 356
PkrI	GCNGC	6 cut(s)	56, 111, 121, 160, 163, 215
PspN4I	GGNNCC	1 cut(s)	189
PstI	CTGCAG	2 cut(s)	111, 166
PstNI	CAGNNNCTG	1 cut(s)	251
PsuI	RGATCY	2 cut(s)	37, 337
PvuII	CAGCTG	1 cut(s)	122
RseI	CAYNNNNRTG	1 cut(s)	221
SaqAI	TTAA	2 cut(s)	321, 362
SatI	GCNGC	6 cut(s)	55, 110, 120, 159, 162, 214
Sau3AI	GATC	2 cut(s)	37, 337
SetI	ASST	5 cut(s)	24, 66, 124, 175, 411
SfaNI	GCATC	2 cut(s)	236, 264
SfcI	CTRYAG	2 cut(s)	107, 162
SmiMI	CAYNNNNRTG	1 cut(s)	221
SseBI	AGGCCT	1 cut(s)	146
SsiI	CCGC	3 cut(s)	55, 213, 329
SspI	AATATT	1 cut(s)	267
SspMI	CTAG	1 cut(s)	257
StuI	AGGCCT	1 cut(s)	146
TaaI	ACNGT	1 cut(s)	87
TaiI	ACGT	1 cut(s)	24
TaqI	TCGA	2 cut(s)	44, 375
TauI	GCSGC	2 cut(s)	57, 216
TfiI	GAWTC	2 cut(s)	193, 356
Tru1I	TTAA	2 cut(s)	321, 362
Tru9I	TTAA	2 cut(s)	321, 362
TseI	GCWGC	4 cut(s)	109, 119, 158, 161
TspDTI	ATGAA	1 cut(s)	216
XspI	CTAG	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.