MD15G1277300.v1.1

disease resistance

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Forward (+)
24387802 .. 24388853
1052 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1277300.v1.1.491

Sequence Viewer

Length: 786 bp
ATGATAGATGGACATAGTAGTAAGAGTGGGGGCAACGACAGCAGTGGTGGTAATGGTGATGGTGGTTGTGGTGGAGTTGGTGGTTGCGGTGGAGCTGGTGGTGGTGCTAATAGTGGGATATGTTGGTTGAGGTGGAAAGGTAACATTGGTGGTATGGCGGTGGTAGTGGTGGCAGTTGCAGTTATGGTGGTGTCAGTGGTGGCGGCAATGATGGTGGTAATGATAGTTGTGGTTGTGATGGCGATGATGGCAGTTGCAGTAATGATGGTGGTGATGGTGTTGGCAATGATAGCATCGATGGTGGTAATAGTGGCGGTGGCAATGGCGGCGGCGGTAGTGATGGTGGTGACAATGATGGTAGTGATGACAGAGGTGAAGGTTGTGGTTATGGCGGCGGTGGTGGTGACAATAATGGTGGTTGTAATGGAGGAGATGGTAACGACATTTGAAATGCTGTTTGATGCTGTAAAATCAGTGCAGGAGGAGAATAAAATGTTCCAGCACCTCTCCCGAGACATCAAGTTCGCACAGGACTCTGTACAACCACTCATCAAAGACATCGAAAAGTATAACTCGAAAGAGGGACCGCAAATTTTGCAATACAGATGGAGGAGGGAACAAGCTTTCAACAACTGTTACATAATCTCAGTGGCATTCCCGAATATAGAAGAAATGTATATCGACTATTGCAGTGATTTAATAGAGTTGCCCGCCGAGATTTGTGATCTTAGTAAACTAAAGAAGCTCAGTGTCACTAACTGTCATAAGATATCTGCCTTTACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

262

Amino Acids

27.93

Weight (kDa)

5.23

Isoelectric Point (pI)

47.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 591
AfaI GTAC 1 cut(s) 540
AgsI TTSAA 2 cut(s) 449, 628
AluBI AGCT 3 cut(s) 95, 623, 745
AluI AGCT 3 cut(s) 95, 623, 745
Alw26I GTCTC 1 cut(s) 507
Ama87I CYCGRG 1 cut(s) 510
ApoI RAATTY 1 cut(s) 591
ArsI GACNNNNNNTTYG 2 cut(s) 506, 538
AspS9I GGNCC 1 cut(s) 584
AsuHPI GGTGA 5 cut(s) 68, 283, 358, 385, 415
AvaI CYCGRG 1 cut(s) 510
AvaII GGWCC 1 cut(s) 584
BcoDI GTCTC 1 cut(s) 507
BisI GCNGC 4 cut(s) 204, 327, 330, 393
BlsI GCNGC 4 cut(s) 205, 328, 331, 394
Bme18I GGWCC 1 cut(s) 584
BmeT110I CYCGRG 1 cut(s) 510
BmgT120I GGNCC 1 cut(s) 584
BmiI GGNNCC 1 cut(s) 585
BmsI GCATC 2 cut(s) 302, 451
Bsa29I ATCGAT 1 cut(s) 296
Bse3DI GCAATG 3 cut(s) 213, 291, 327
BseCI ATCGAT 1 cut(s) 296
BseMI GCAATG 3 cut(s) 213, 291, 327
BseMII CTCAG 2 cut(s) 660, 760
BseRI GAGGAG 3 cut(s) 443, 497, 625
BsgI GTGCAG 1 cut(s) 497
BshVI ATCGAT 1 cut(s) 296
BsiHKCI CYCGRG 1 cut(s) 510
BslFI GGGAC 1 cut(s) 597
BsmAI GTCTC 1 cut(s) 507
BsmFI GGGAC 1 cut(s) 597
BsmI GAATGC 1 cut(s) 653
BsoBI CYCGRG 1 cut(s) 510
Bsp1407I TGTACA 1 cut(s) 538
Bsp143I GATC 1 cut(s) 724
BspCNI CTCAG 2 cut(s) 659, 759
BspDI ATCGAT 1 cut(s) 296
BspLI GGNNCC 1 cut(s) 585
BsrDI GCAATG 3 cut(s) 213, 291, 327
BsrGI TGTACA 1 cut(s) 538
BssMI GATC 1 cut(s) 724
Bst4CI ACNGT 2 cut(s) 635, 761
BstAPI GCANNNNNTGC 1 cut(s) 595
BstAUI TGTACA 1 cut(s) 538
BstC8I GCNNGC 1 cut(s) 711
BstDEI CTNAG 3 cut(s) 646, 728, 746
BstKTI GATC 1 cut(s) 727
BstMAI GTCTC 1 cut(s) 507
BstMBI GATC 1 cut(s) 724
BstMWI GCNNNNNNNGC 5 cut(s) 39, 248, 290, 326, 595
Bsu15I ATCGAT 1 cut(s) 296
BsuTUI ATCGAT 1 cut(s) 296
BtgZI GCGATG 1 cut(s) 257
BtsI GCAGTG 2 cut(s) 49, 697
BtsIMutI CAGTG 6 cut(s) 49, 201, 480, 654, 697, 754
Cac8I GCNNGC 1 cut(s) 711
Cfr13I GGNCC 1 cut(s) 584
ClaI ATCGAT 1 cut(s) 296
Csp6I GTAC 1 cut(s) 539
CspCI CAANNNNNGTGG 4 cut(s) 195, 230, 396, 431
CviJI RGCY 3 cut(s) 95, 623, 745
CviKI_1 RGCY 3 cut(s) 95, 623, 745
CviQI GTAC 1 cut(s) 539
DdeI CTNAG 3 cut(s) 646, 728, 746
DpnI GATC 1 cut(s) 726
DpnII GATC 1 cut(s) 724
Eco32I GATATC 1 cut(s) 771
Eco47I GGWCC 1 cut(s) 584
Eco88I CYCGRG 1 cut(s) 510
EcoRV GATATC 1 cut(s) 771
FaqI GGGAC 1 cut(s) 597
FauI CCCGC 1 cut(s) 718
Fnu4HI GCNGC 4 cut(s) 204, 327, 330, 393
Fsp4HI GCNGC 4 cut(s) 204, 327, 330, 393
GluI GCNGC 4 cut(s) 204, 327, 330, 393
HindIII AAGCTT 1 cut(s) 621
HinfI GANTC 1 cut(s) 533
HphI GGTGA 5 cut(s) 68, 283, 358, 385, 415
Hpy166II GTNNAC 1 cut(s) 734
Hpy188III TCNNGA 2 cut(s) 510, 658
Hpy8I GTNNAC 1 cut(s) 734
HpyAV CCTTC 1 cut(s) 370
HpyCH4III ACNGT 2 cut(s) 635, 761
HpyCH4V TGCA 5 cut(s) 179, 257, 478, 598, 690
HpyF10VI GCNNNNNNNGC 5 cut(s) 39, 248, 290, 326, 595
HpyF3I CTNAG 3 cut(s) 646, 728, 746
Kzo9I GATC 1 cut(s) 724
LmnI GCTCC 1 cut(s) 92
LpnPI CCDG 4 cut(s) 81, 464, 512, 515
LweI GCATC 2 cut(s) 302, 451
MaeIII GTNAC 6 cut(s) 140, 346, 403, 436, 635, 751
MalI GATC 1 cut(s) 726
MboI GATC 1 cut(s) 724
MboII GAAGA 1 cut(s) 680
MluCI AATT 1 cut(s) 591
MlyI GAGTC 1 cut(s) 527
MnlI CCTC 8 cut(s) 123, 364, 421, 475, 515, 574, 603, 606
MseI TTAA 1 cut(s) 698
Mva1269I GAATGC 1 cut(s) 653
MwoI GCNNNNNNNGC 5 cut(s) 39, 248, 290, 326, 595
NdeII GATC 1 cut(s) 724
NlaIV GGNNCC 1 cut(s) 585
NmeAIII GCCGAG 1 cut(s) 739
NmuCI GTSAC 3 cut(s) 346, 403, 751
PctI GAATGC 1 cut(s) 653
PkrI GCNGC 4 cut(s) 205, 328, 331, 394
PleI GAGTC 1 cut(s) 527
PpsI GAGTC 1 cut(s) 527
PspN4I GGNNCC 1 cut(s) 585
PspPI GGNCC 1 cut(s) 584
RsaI GTAC 1 cut(s) 540
RsaNI GTAC 1 cut(s) 539
SaqAI TTAA 1 cut(s) 698
SatI GCNGC 4 cut(s) 204, 327, 330, 393
Sau3AI GATC 1 cut(s) 724
Sau96I GGNCC 1 cut(s) 584
SchI GAGTC 1 cut(s) 527
SetI ASST 9 cut(s) 97, 134, 142, 375, 381, 507, 625, 747, 785
SfaNI GCATC 2 cut(s) 302, 451
SinI GGWCC 1 cut(s) 584
Sse9I AATT 1 cut(s) 591
TaaI ACNGT 2 cut(s) 635, 761
TaqI TCGA 4 cut(s) 296, 561, 575, 681
TasI AATT 1 cut(s) 591
TatI WGTACW 1 cut(s) 538
TauI GCSGC 4 cut(s) 206, 329, 332, 395
Tru1I TTAA 1 cut(s) 698
Tru9I TTAA 1 cut(s) 698
TscAI CASTG 6 cut(s) 49, 201, 480, 654, 697, 754
TseFI GTSAC 3 cut(s) 346, 403, 751
Tsp45I GTSAC 3 cut(s) 346, 403, 751
TspRI CASTG 6 cut(s) 49, 201, 480, 654, 697, 754
VpaK11BI GGWCC 1 cut(s) 584
XapI RAATTY 1 cut(s) 591
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.