Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0000780

Physical Location & Seq

Genomic Coordinates Forward (+)

55306449 .. 55321097

Gene Structure 14649 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG412700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGAGAAGATGATCATGTTCAAGGTCCACGTGAGAGATGTGAAATCGACGCTCGACTGTTTGAAACCAGTGATCCAGGAGATAACGGAATACAACAAGGTGTTGAAGAATCAACCAATGGAGGAGGAACAAGCACTGCAGCACTTGAAATCGCAAATAGAAGAAGGCGCAATTCTGGTTCAAAAGTGTTCCAAGGTTGGTGCCTGGAGTTTCCGCAAGAAGTACAAGTACAGCAACCAACTCTTTCAACACGATCAATCGCTTCACACACTCTTGCAATTGCTCGAACAGCAGAAAGCAAGAGATGTCTGGGAGACCTTGGTTACGGTCAGGAAGATAGAGACCGTCGTCCAGCGAATTGAAGGAAACGCACGTGGCTGGAACTTGATCAGAAAACTCTTTTATTGGTACCACATGGGTCCGACCCACAGCATCGAACCGAGTCCAACTAACGGTCAAAACACGCTTGACGAGTTGACGCGCTGTCTCTCGAAGTGTCGACCCAGTAAAAACCGGCCTCTATATATGTATTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

178

Amino Acids

21.07

Weight (kDa)

9.27

Isoelectric Point (pI)

50.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	2 - 117	1.2e-15	Arabidopsis broad-spectrum mildew resistance protein RPW8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000780)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g32810 FvH4_5g32810 FvH4_5g32820 FvH4_5g32830
malus_domestica	MD02G1165800.v1.1 MD15G1022900.v1.1 MD15G1277300.v1.1
prunus_persica	Prupe.5G127600_v2.0.a1
pyrus_communis	pycom02g13140 pycom15g24060 pycom15g24100 pycom15g24130
rosa_chinensis	RchiOBHm_Chr2g0143661 RchiOBHm_Chr7g0230541 RchiOBHm_Chr7g0230551 RchiOBHm_Chr7g0230651 RchiOBHm_Chr7g0230701
rosa_laevigata	RLG00000001482 RLG00000001487 RLG00000002333 RLG00000020057
rosa_multiflora	Rmu_sc0002222.1_g000006 Rmu_sc0002799.1_g000008 Rmu_sc0002799.1_g000010 Rmu_sc0002799.1_g000011 Rmu_sc0002799.1_g000013 Rmu_sc0007883.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101570 Rroxscaffold_3G00229820 Rroxscaffold_3G00229840 Rroxscaffold_3G00229950 Rroxscaffold_3G00230000 Rroxscaffold_3G00230010 Rroxscaffold_3G00230020 Rroxscaffold_3G00230030
rosa_rugosa	Rorug02G0384500 Rorug07G0261400 Rorug07G0261500 Rorug07G0261600 Rorug07G0261700 Rorug07G0261900
rosa_samantha	Rh2AG169200 Rh2AG436600 Rh2BG444200 Rh2CG422900 Rh2DG177700 Rh2DG454500 Rh5BG005200 Rh7AG321600 Rh7AG410000 Rh7AG410100 Rh7AG412600 Rh7AG412700 Rh7AG412800 Rh7AG413700 Rh7AG413800 Rh7CG338100 Rh7CG430500 Rh7CG430600 Rh7CG430800 Rh7CG432500 Rh7CG432600 Rh7DG319700 Rh7DG408100 Rh7DG408200 Rh7DG408300 Rh7DG408400 Rh7DG408500 Rh7DG409300
rosa_wichuraiana	Rw7G034330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	408
AccB1I	GGYRCC	2 cut(s)	200, 408
AccI	GTMKAC	1 cut(s)	499
AccII	CGCG	1 cut(s)	481
AciI	CCGC	1 cut(s)	214
AclWI	GGATC	1 cut(s)	67
AcvI	CACGTG	2 cut(s)	31, 374
AfaI	GTAC	3 cut(s)	224, 230, 410
AfiI	CCNNNNNNNGG	1 cut(s)	452
AgsI	TTSAA	7 cut(s)	22, 64, 106, 148, 182, 248, 362
AhdI	GACNNNNNGTC	1 cut(s)	483
AjnI	CCWGG	2 cut(s)	75, 203
Alw26I	GTCTC	3 cut(s)	308, 335, 491
AlwI	GGATC	1 cut(s)	67
AoxI	GGCC	1 cut(s)	515
ApeKI	GCWGC	1 cut(s)	139
Asp718I	GGTACC	1 cut(s)	408
AspLEI	GCGC	2 cut(s)	170, 483
AspS9I	GGNCC	2 cut(s)	25, 419
AvaII	GGWCC	2 cut(s)	25, 419
BanI	GGYRCC	2 cut(s)	200, 408
BarI	GAAGNNNNNNTAC	2 cut(s)	212, 244
BbrPI	CACGTG	2 cut(s)	31, 374
BbvI	GCAGC	1 cut(s)	151
BciT130I	CCWGG	2 cut(s)	77, 205
BclI	TGATCA	2 cut(s)	12, 387
BcoDI	GTCTC	3 cut(s)	308, 335, 491
BfmI	CTRYAG	1 cut(s)	137
BisI	GCNGC	1 cut(s)	140
BlsI	GCNGC	1 cut(s)	141
Bme1390I	CCNGG	2 cut(s)	77, 205
Bme18I	GGWCC	2 cut(s)	25, 419
BmeRI	GACNNNNNGTC	1 cut(s)	483
BmgT120I	GGNCC	2 cut(s)	25, 419
BmiI	GGNNCC	3 cut(s)	202, 410, 420
BmrFI	CCNGG	2 cut(s)	77, 205
BmrI	ACTGGG	1 cut(s)	498
BmsI	GCATC	1 cut(s)	441
BmuI	ACTGGG	1 cut(s)	498
BoxI	GACNNNNGTC	1 cut(s)	347
BpmI	CTGGAG	1 cut(s)	226
BsaAI	YACGTR	2 cut(s)	31, 374
BsaI	GGTCTC	2 cut(s)	308, 335
BsaJI	CCNNGG	2 cut(s)	192, 318
Bsc4I	CCNNNNNNNGG	1 cut(s)	452
Bse118I	RCCGGY	1 cut(s)	513
Bse1I	ACTGG	2 cut(s)	68, 504
BseBI	CCWGG	2 cut(s)	77, 205
BseDI	CCNNGG	2 cut(s)	192, 318
BseLI	CCNNNNNNNGG	1 cut(s)	452
BseNI	ACTGG	2 cut(s)	68, 504
BseRI	GAGGAG	1 cut(s)	137
BseXI	GCAGC	1 cut(s)	151
Bsh1236I	CGCG	1 cut(s)	481
BshFI	GGCC	1 cut(s)	517
BshNI	GGYRCC	2 cut(s)	200, 408
BsiSI	CCGG	1 cut(s)	514
BslI	CCNNNNNNNGG	1 cut(s)	452
BsmAI	GTCTC	3 cut(s)	308, 335, 491
BsnI	GGCC	1 cut(s)	517
Bso31I	GGTCTC	2 cut(s)	308, 335
Bsp143I	GATC	4 cut(s)	12, 72, 253, 387
BspACI	CCGC	1 cut(s)	214
BspANI	GGCC	1 cut(s)	517
BspFNI	CGCG	1 cut(s)	481
BspLI	GGNNCC	3 cut(s)	202, 410, 420
BspMAI	CTGCAG	1 cut(s)	141
BspPI	GGATC	1 cut(s)	67
BspT107I	GGYRCC	2 cut(s)	200, 408
BspTNI	GGTCTC	2 cut(s)	308, 335
BsrFI	RCCGGY	1 cut(s)	513
BsrI	ACTGG	2 cut(s)	68, 504
BssAI	RCCGGY	1 cut(s)	513
BssECI	CCNNGG	2 cut(s)	192, 318
BssMI	GATC	4 cut(s)	12, 72, 253, 387
BssT1I	CCWWGG	2 cut(s)	192, 318
Bst2UI	CCWGG	2 cut(s)	77, 205
Bst4CI	ACNGT	4 cut(s)	59, 328, 346, 455
BstBAI	YACGTR	2 cut(s)	31, 374
BstFNI	CGCG	1 cut(s)	481
BstHHI	GCGC	2 cut(s)	170, 483
BstKTI	GATC	4 cut(s)	15, 75, 256, 390
BstMAI	GTCTC	3 cut(s)	308, 335, 491
BstMBI	GATC	4 cut(s)	12, 72, 253, 387
BstMWI	GCNNNNNNNGC	1 cut(s)	289
BstNI	CCWGG	2 cut(s)	77, 205
BstPAI	GACNNNNGTC	1 cut(s)	347
BstSCI	CCNGG	2 cut(s)	75, 203
BstSFI	CTRYAG	1 cut(s)	137
BstUI	CGCG	1 cut(s)	481
BstV1I	GCAGC	1 cut(s)	151
BsuRI	GGCC	1 cut(s)	517
BtsI	GCAGTG	1 cut(s)	134
BtsIMutI	CAGTG	2 cut(s)	75, 134
CfoI	GCGC	2 cut(s)	170, 483
Cfr10I	RCCGGY	1 cut(s)	513
Cfr13I	GGNCC	2 cut(s)	25, 419
CseI	GACGC	2 cut(s)	58, 487
Csp6I	GTAC	3 cut(s)	223, 229, 409
CviAII	CATG	2 cut(s)	16, 415
CviJI	RGCY	2 cut(s)	378, 517
CviKI_1	RGCY	2 cut(s)	378, 517
CviQI	GTAC	3 cut(s)	223, 229, 409
DpnI	GATC	4 cut(s)	14, 74, 255, 389
DpnII	GATC	4 cut(s)	12, 72, 253, 387
DriI	GACNNNNNGTC	1 cut(s)	483
Eam1105I	GACNNNNNGTC	1 cut(s)	483
Eco130I	CCWWGG	2 cut(s)	192, 318
Eco31I	GGTCTC	2 cut(s)	308, 335
Eco47I	GGWCC	2 cut(s)	25, 419
Eco72I	CACGTG	2 cut(s)	31, 374
EcoRII	CCWGG	2 cut(s)	75, 203
EcoT14I	CCWWGG	2 cut(s)	192, 318
ErhI	CCWWGG	2 cut(s)	192, 318
FaeI	CATG	2 cut(s)	19, 418
FaiI	YATR	5 cut(s)	17, 416, 523, 525, 527
FatI	CATG	2 cut(s)	15, 414
FbaI	TGATCA	2 cut(s)	12, 387
FblI	GTMKAC	1 cut(s)	499
Fnu4HI	GCNGC	1 cut(s)	140
Fsp4HI	GCNGC	1 cut(s)	140
GlaI	GCGC	2 cut(s)	169, 482
GluI	GCNGC	1 cut(s)	140
GsuI	CTGGAG	1 cut(s)	226
HaeIII	GGCC	1 cut(s)	517
HapII	CCGG	1 cut(s)	514
HgaI	GACGC	2 cut(s)	58, 487
HhaI	GCGC	2 cut(s)	170, 483
Hin1II	CATG	2 cut(s)	19, 418
Hin6I	GCGC	2 cut(s)	168, 481
HinP1I	GCGC	2 cut(s)	168, 481
HincII	GTYRAC	2 cut(s)	477, 500
HindII	GTYRAC	2 cut(s)	477, 500
HinfI	GANTC	2 cut(s)	109, 442
HpaII	CCGG	1 cut(s)	514
Hpy166II	GTNNAC	3 cut(s)	28, 477, 500
Hpy188I	TCNGA	2 cut(s)	392, 423
Hpy188III	TCNNGA	2 cut(s)	331, 490
Hpy8I	GTNNAC	3 cut(s)	28, 477, 500
Hpy99I	CGWCG	2 cut(s)	52, 350
HpyAV	CCTTC	2 cut(s)	158, 356
HpyCH4III	ACNGT	4 cut(s)	59, 328, 346, 455
HpyCH4IV	ACGT	2 cut(s)	30, 373
HpyCH4V	TGCA	2 cut(s)	139, 277
HpyF10VI	GCNNNNNNNGC	1 cut(s)	289
HpySE526I	ACGT	2 cut(s)	30, 373
Hsp92II	CATG	2 cut(s)	19, 418
HspAI	GCGC	2 cut(s)	168, 481
KpnI	GGTACC	1 cut(s)	412
Ksp22I	TGATCA	2 cut(s)	12, 387
Kzo9I	GATC	4 cut(s)	12, 72, 253, 387
Lsp1109I	GCAGC	1 cut(s)	151
LweI	GCATC	1 cut(s)	441
MaeII	ACGT	2 cut(s)	30, 373
MaeIII	GTNAC	1 cut(s)	322
MalI	GATC	4 cut(s)	14, 74, 255, 389
MboI	GATC	4 cut(s)	12, 72, 253, 387
MboII	GAAGA	4 cut(s)	19, 118, 173, 346
MfeI	CAATTG	1 cut(s)	278
MluCI	AATT	3 cut(s)	171, 278, 357
MlyI	GAGTC	1 cut(s)	451
MmeI	TCCRAC	2 cut(s)	446, 470
MnlI	CCTC	3 cut(s)	115, 118, 528
MspI	CCGG	1 cut(s)	514
MspR9I	CCNGG	2 cut(s)	77, 205
MunI	CAATTG	1 cut(s)	278
MvaI	CCWGG	2 cut(s)	77, 205
MvnI	CGCG	1 cut(s)	481
MwoI	GCNNNNNNNGC	1 cut(s)	289
NdeII	GATC	4 cut(s)	12, 72, 253, 387
NlaIII	CATG	2 cut(s)	19, 418
NlaIV	GGNNCC	3 cut(s)	202, 410, 420
PfeI	GAWTC	1 cut(s)	109
PfoI	TCCNGGA	1 cut(s)	75
PkrI	GCNGC	1 cut(s)	141
PleI	GAGTC	1 cut(s)	450
PmaCI	CACGTG	2 cut(s)	31, 374
PmlI	CACGTG	2 cut(s)	31, 374
PpsI	GAGTC	1 cut(s)	450
Ppu21I	YACGTR	2 cut(s)	31, 374
PshAI	GACNNNNGTC	1 cut(s)	347
Psp6I	CCWGG	2 cut(s)	75, 203
PspCI	CACGTG	2 cut(s)	31, 374
PspGI	CCWGG	2 cut(s)	75, 203
PspN4I	GGNNCC	3 cut(s)	202, 410, 420
PspPI	GGNCC	2 cut(s)	25, 419
PstI	CTGCAG	1 cut(s)	141
RsaI	GTAC	3 cut(s)	224, 230, 410
RsaNI	GTAC	3 cut(s)	223, 229, 409
SalI	GTCGAC	1 cut(s)	498
SatI	GCNGC	1 cut(s)	140
Sau3AI	GATC	4 cut(s)	12, 72, 253, 387
Sau96I	GGNCC	2 cut(s)	25, 419
SchI	GAGTC	1 cut(s)	451
ScrFI	CCNGG	2 cut(s)	77, 205
SetI	ASST	6 cut(s)	27, 33, 102, 198, 320, 376
SfaNI	GCATC	1 cut(s)	441
SfcI	CTRYAG	1 cut(s)	137
SinI	GGWCC	2 cut(s)	25, 419
Sse9I	AATT	3 cut(s)	171, 278, 357
SsiI	CCGC	1 cut(s)	214
StyD4I	CCNGG	2 cut(s)	75, 203
StyI	CCWWGG	2 cut(s)	192, 318
TaaI	ACNGT	4 cut(s)	59, 328, 346, 455
TaiI	ACGT	2 cut(s)	33, 376
TaqI	TCGA	6 cut(s)	47, 54, 285, 435, 491, 499
TasI	AATT	3 cut(s)	171, 278, 357
TatI	WGTACW	2 cut(s)	222, 228
TfiI	GAWTC	1 cut(s)	109
TscAI	CASTG	2 cut(s)	75, 141
TseI	GCWGC	1 cut(s)	139
TspGWI	ACGGA	1 cut(s)	101
TspRI	CASTG	2 cut(s)	75, 141
VpaK11BI	GGWCC	2 cut(s)	25, 419
XmiI	GTMKAC	1 cut(s)	499

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.