Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000780

Physical Location & Seq

Genomic Coordinates Reverse (-)

24637195 .. 24638855

Gene Structure 1661 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0261700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGAATTACCTGCGGAGATTTTCAATCTCAAGCGACTTCGCCATCTCTTGGTGTACCGATATGAGGTAGAGTCATATGCACGTTTAACTGTCAAAAATGGAGTTAAGGTTCCTGCAGGAATATGTGGCTTGCAATCGCTCCAAAAGCTCTGCTTTATAGAGGCAAATCAAGGCAGTGGTGCTTTAATGGCAGAGCTTGGGAGAATGGACCAACTAAGGAGGTTAGGCATTTACAAGTTGAGAGAAGAAGATGGGGCCACCTTATGCTCATCCGTCCAAAATATGACCAGCCTTCGCTCGTTGTCTGTATCTTCAGCAAAGAAAGAGAAGATAATTGATCTGAGCCACATTTCTCGTGCTCCTCCATTTCTACAGCGACTATACTTGACAGGGTGTTTAGAGGAATTACCACACTGGATTTCTTCTCTTCAATACCTGGTCAGACTGTTTTTAAGATGGAGTCGGCTGAAGCAGGATCCTCTAGTACATCTTCAACATTTGGCAAATCTGGTACATCTGGAACTGGTACAAGCTTATGATGGAGAATGCCTGCATTTTGAGGAAGGAGGGTTTCCAAGTCTGTTGTTATTACGTATTGATGAATCAGATAAACTGCAGTTTGTCAAAATGGACCGGGGAGCAGTGCCTCATCTAGAGAAGCTAATTATCCAACGGTGCGAGTTGTTGAAGGTTCCATATGGAATTGAACATTTAACCAACTTAAAGTTGCTTGAATTTTTCGATGTGCCAGTTGAAGTAGTCATGCCTCTATATCCAGATGGAAAAGATCATTGGAAAGTCGTTCATGTCCCAGAAGTCTATTATTCCTATCCAGAGAGGTGGCGACTGGAATGTCTGTTCATTAGTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

290

Amino Acids

33.59

Weight (kDa)

7.16

Isoelectric Point (pI)

58.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	2 - 244	4.8e-29	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000780)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g32810 FvH4_5g32810 FvH4_5g32820 FvH4_5g32830
malus_domestica	MD02G1165800.v1.1 MD15G1022900.v1.1 MD15G1277300.v1.1
prunus_persica	Prupe.5G127600_v2.0.a1
pyrus_communis	pycom02g13140 pycom15g24060 pycom15g24100 pycom15g24130
rosa_chinensis	RchiOBHm_Chr2g0143661 RchiOBHm_Chr7g0230541 RchiOBHm_Chr7g0230551 RchiOBHm_Chr7g0230651 RchiOBHm_Chr7g0230701
rosa_laevigata	RLG00000001482 RLG00000001487 RLG00000002333 RLG00000020057
rosa_multiflora	Rmu_sc0002222.1_g000006 Rmu_sc0002799.1_g000008 Rmu_sc0002799.1_g000010 Rmu_sc0002799.1_g000011 Rmu_sc0002799.1_g000013 Rmu_sc0007883.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101570 Rroxscaffold_3G00229820 Rroxscaffold_3G00229840 Rroxscaffold_3G00229950 Rroxscaffold_3G00230000 Rroxscaffold_3G00230010 Rroxscaffold_3G00230020 Rroxscaffold_3G00230030
rosa_rugosa	Rorug02G0384500 Rorug07G0261400 Rorug07G0261500 Rorug07G0261600 Rorug07G0261700 Rorug07G0261900
rosa_samantha	Rh2AG169200 Rh2AG436600 Rh2BG444200 Rh2CG422900 Rh2DG177700 Rh2DG454500 Rh5BG005200 Rh7AG321600 Rh7AG410000 Rh7AG410100 Rh7AG412600 Rh7AG412700 Rh7AG412800 Rh7AG413700 Rh7AG413800 Rh7CG338100 Rh7CG430500 Rh7CG430600 Rh7CG430800 Rh7CG432500 Rh7CG432600 Rh7DG319700 Rh7DG408100 Rh7DG408200 Rh7DG408300 Rh7DG408400 Rh7DG408500 Rh7DG409300
rosa_wichuraiana	Rw7G034330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	852
Acc36I	ACCTGC	1 cut(s)	19
AccB7I	CCANNNNNTGG	1 cut(s)	49
AciI	CCGC	1 cut(s)	14
AclWI	GGATC	2 cut(s)	470, 483
AcsI	RAATTY	1 cut(s)	734
AcuI	CTGAAG	2 cut(s)	297, 488
AfaI	GTAC	4 cut(s)	56, 486, 513, 528
AfiI	CCNNNNNNNGG	2 cut(s)	49, 64
AgsI	TTSAA	7 cut(s)	25, 431, 494, 688, 707, 734, 755
AjnI	CCWGG	1 cut(s)	435
AjuI	GAANNNNNNNTTGG	2 cut(s)	775, 807
AloI	GAACNNNNNNTCC	3 cut(s)	93, 125, 842
AluBI	AGCT	4 cut(s)	148, 196, 533, 661
AluI	AGCT	4 cut(s)	148, 196, 533, 661
Alw21I	GWGCWC	1 cut(s)	361
AlwI	GGATC	2 cut(s)	470, 483
AoxI	GGCC	1 cut(s)	255
ApoI	RAATTY	1 cut(s)	734
AspS9I	GGNCC	3 cut(s)	208, 255, 631
AsuC2I	CCSGG	1 cut(s)	635
AvaII	GGWCC	2 cut(s)	208, 631
BamHI	GGATCC	1 cut(s)	475
BauI	CACGAG	1 cut(s)	354
Bbv12I	GWGCWC	1 cut(s)	361
BccI	CCATC	5 cut(s)	51, 245, 450, 533, 773
BciT130I	CCWGG	1 cut(s)	437
BcnI	CCSGG	1 cut(s)	635
BfaI	CTAG	2 cut(s)	482, 653
BfmI	CTRYAG	3 cut(s)	114, 371, 614
BfuAI	ACCTGC	1 cut(s)	19
Bme1390I	CCNGG	2 cut(s)	437, 635
Bme18I	GGWCC	2 cut(s)	208, 631
BmgT120I	GGNCC	3 cut(s)	208, 255, 631
BmiI	GGNNCC	4 cut(s)	111, 256, 477, 693
BmrFI	CCNGG	2 cut(s)	437, 635
BpuEI	CTTGAG	1 cut(s)	14
BpuMI	CCSGG	1 cut(s)	635
BsaAI	YACGTR	1 cut(s)	593
BsaJI	CCNNGG	1 cut(s)	634
BsaXI	ACNNNNNCTCC	2 cut(s)	93, 123
Bsc4I	CCNNNNNNNGG	2 cut(s)	49, 64
Bse1I	ACTGG	4 cut(s)	419, 528, 749, 852
BseBI	CCWGG	1 cut(s)	437
BseDI	CCNNGG	1 cut(s)	634
BseGI	GGATG	1 cut(s)	269
BseLI	CCNNNNNNNGG	2 cut(s)	49, 64
BseMII	CTCAG	1 cut(s)	332
BseNI	ACTGG	4 cut(s)	419, 528, 749, 852
BseRI	GAGGAG	1 cut(s)	351
BshFI	GGCC	1 cut(s)	257
BsiHKAI	GWGCWC	1 cut(s)	361
BsiSI	CCGG	1 cut(s)	634
BslFI	GGGAC	1 cut(s)	794
BslI	CCNNNNNNNGG	2 cut(s)	49, 64
BsmFI	GGGAC	1 cut(s)	794
BsmI	GAATGC	1 cut(s)	551
BsnI	GGCC	1 cut(s)	257
Bsp1286I	GDGCHC	1 cut(s)	361
Bsp143I	GATC	3 cut(s)	337, 475, 787
BspACI	CCGC	1 cut(s)	14
BspANI	GGCC	1 cut(s)	257
BspCNI	CTCAG	1 cut(s)	333
BspLI	GGNNCC	4 cut(s)	111, 256, 477, 693
BspMAI	CTGCAG	2 cut(s)	118, 618
BspMI	ACCTGC	1 cut(s)	19
BspPI	GGATC	2 cut(s)	470, 483
BsrI	ACTGG	4 cut(s)	419, 528, 749, 852
BssECI	CCNNGG	1 cut(s)	634
BssMI	GATC	3 cut(s)	337, 475, 787
BssSI	CACGAG	1 cut(s)	354
Bst2BI	CACGAG	1 cut(s)	354
Bst2UI	CCWGG	1 cut(s)	437
Bst4CI	ACNGT	3 cut(s)	91, 447, 675
Bst6I	CTCTTC	1 cut(s)	432
BstBAI	YACGTR	1 cut(s)	593
BstC8I	GCNNGC	2 cut(s)	131, 551
BstDEI	CTNAG	2 cut(s)	215, 341
BstF5I	GGATG	1 cut(s)	269
BstKTI	GATC	3 cut(s)	340, 478, 790
BstMBI	GATC	3 cut(s)	337, 475, 787
BstMWI	GCNNNNNNNGC	2 cut(s)	145, 188
BstNI	CCWGG	1 cut(s)	437
BstSCI	CCNGG	2 cut(s)	435, 633
BstSFI	CTRYAG	3 cut(s)	114, 371, 614
BstSNI	TACGTA	1 cut(s)	593
BstX2I	RGATCY	1 cut(s)	475
BstXI	CCANNNNNNTGG	1 cut(s)	840
BstYI	RGATCY	1 cut(s)	475
BsuRI	GGCC	1 cut(s)	257
BtsCI	GGATG	1 cut(s)	269
BtsI	GCAGTG	2 cut(s)	181, 648
BtsIMutI	CAGTG	3 cut(s)	181, 412, 648
BveI	ACCTGC	1 cut(s)	19
Cac8I	GCNNGC	2 cut(s)	131, 551
Cfr13I	GGNCC	3 cut(s)	208, 255, 631
CsiI	ACCWGGT	1 cut(s)	435
Csp6I	GTAC	4 cut(s)	55, 485, 512, 527
CviAII	CATG	2 cut(s)	763, 806
CviJI	RGCY	9 cut(s)	129, 148, 196, 257, 291, 345, 466, 533, 661
CviKI_1	RGCY	9 cut(s)	129, 148, 196, 257, 291, 345, 466, 533, 661
CviQI	GTAC	4 cut(s)	55, 485, 512, 527
DdeI	CTNAG	2 cut(s)	215, 341
DpnI	GATC	3 cut(s)	339, 477, 789
DpnII	GATC	3 cut(s)	337, 475, 787
DrdI	GACNNNNNNGTC	1 cut(s)	852
DseDI	GACNNNNNNGTC	1 cut(s)	852
Eam1104I	CTCTTC	1 cut(s)	432
EarI	CTCTTC	1 cut(s)	432
Eco105I	TACGTA	1 cut(s)	593
Eco47I	GGWCC	2 cut(s)	208, 631
Eco57I	CTGAAG	2 cut(s)	297, 488
EcoRII	CCWGG	1 cut(s)	435
FaeI	CATG	2 cut(s)	766, 809
FalI	AAGNNNNNCTT	2 cut(s)	137, 169
FaqI	GGGAC	1 cut(s)	794
FatI	CATG	2 cut(s)	762, 805
FauNDI	CATATG	2 cut(s)	76, 697
FokI	GGATG	1 cut(s)	256
FspBI	CTAG	2 cut(s)	482, 653
HaeIII	GGCC	1 cut(s)	257
HapII	CCGG	1 cut(s)	634
Hin1II	CATG	2 cut(s)	766, 809
HindIII	AAGCTT	1 cut(s)	531
HinfI	GANTC	3 cut(s)	71, 460, 602
HpaII	CCGG	1 cut(s)	634
Hpy166II	GTNNAC	1 cut(s)	55
Hpy188I	TCNGA	3 cut(s)	342, 443, 607
Hpy188III	TCNNGA	4 cut(s)	518, 653, 776, 833
Hpy8I	GTNNAC	1 cut(s)	55
HpyAV	CCTTC	3 cut(s)	302, 557, 682
HpyCH4III	ACNGT	3 cut(s)	91, 447, 675
HpyCH4IV	ACGT	2 cut(s)	82, 592
HpyCH4V	TGCA	5 cut(s)	80, 116, 133, 553, 616
HpyF10VI	GCNNNNNNNGC	2 cut(s)	145, 188
HpyF3I	CTNAG	2 cut(s)	215, 341
HpySE526I	ACGT	2 cut(s)	82, 592
Hsp92II	CATG	2 cut(s)	766, 809
Kzo9I	GATC	3 cut(s)	337, 475, 787
LmnI	GCTCC	3 cut(s)	144, 364, 638
MabI	ACCWGGT	1 cut(s)	435
MaeI	CTAG	2 cut(s)	482, 653
MaeII	ACGT	2 cut(s)	82, 592
MalI	GATC	3 cut(s)	339, 477, 789
MboI	GATC	3 cut(s)	337, 475, 787
MboII	GAAGA	7 cut(s)	257, 260, 303, 340, 414, 419, 482
MflI	RGATCY	1 cut(s)	475
MhlI	GDGCHC	1 cut(s)	361
MluCI	AATT	6 cut(s)	5, 333, 404, 663, 702, 734
MlyI	GAGTC	2 cut(s)	80, 469
MmeI	TCCRAC	1 cut(s)	694
MseI	TTAA	6 cut(s)	86, 105, 185, 452, 713, 722
MspI	CCGG	1 cut(s)	634
MspR9I	CCNGG	2 cut(s)	437, 635
Mva1269I	GAATGC	1 cut(s)	551
MvaI	CCWGG	1 cut(s)	437
MwoI	GCNNNNNNNGC	2 cut(s)	145, 188
NciI	CCSGG	1 cut(s)	635
NdeI	CATATG	2 cut(s)	76, 697
NdeII	GATC	3 cut(s)	337, 475, 787
NlaIII	CATG	2 cut(s)	766, 809
NlaIV	GGNNCC	4 cut(s)	111, 256, 477, 693
PctI	GAATGC	1 cut(s)	551
PfeI	GAWTC	1 cut(s)	602
PflMI	CCANNNNNTGG	1 cut(s)	49
PleI	GAGTC	2 cut(s)	79, 468
PpsI	GAGTC	2 cut(s)	79, 468
Ppu21I	YACGTR	1 cut(s)	593
Psp6I	CCWGG	1 cut(s)	435
PspGI	CCWGG	1 cut(s)	435
PspN4I	GGNNCC	4 cut(s)	111, 256, 477, 693
PspPI	GGNCC	3 cut(s)	208, 255, 631
PstI	CTGCAG	2 cut(s)	118, 618
PsuI	RGATCY	1 cut(s)	475
RsaI	GTAC	4 cut(s)	56, 486, 513, 528
RsaNI	GTAC	4 cut(s)	55, 485, 512, 527
SaqAI	TTAA	6 cut(s)	86, 105, 185, 452, 713, 722
Sau3AI	GATC	3 cut(s)	337, 475, 787
Sau96I	GGNCC	3 cut(s)	208, 255, 631
SbfI	CCTGCAGG	1 cut(s)	118
SchI	GAGTC	2 cut(s)	80, 469
ScrFI	CCNGG	2 cut(s)	437, 635
SdaI	CCTGCAGG	1 cut(s)	118
SduI	GDGCHC	1 cut(s)	361
SexAI	ACCWGGT	1 cut(s)	435
SfcI	CTRYAG	3 cut(s)	114, 371, 614
SinI	GGWCC	2 cut(s)	208, 631
SmlI	CTYRAG	1 cut(s)	29
SmoI	CTYRAG	1 cut(s)	29
SnaBI	TACGTA	1 cut(s)	593
Sse8387I	CCTGCAGG	1 cut(s)	118
Sse9I	AATT	6 cut(s)	5, 333, 404, 663, 702, 734
SsiI	CCGC	1 cut(s)	14
SspMI	CTAG	2 cut(s)	482, 653
StyD4I	CCNGG	2 cut(s)	435, 633
TaaI	ACNGT	3 cut(s)	91, 447, 675
TaiI	ACGT	2 cut(s)	85, 595
TaqI	TCGA	1 cut(s)	741
TasI	AATT	6 cut(s)	5, 333, 404, 663, 702, 734
TatI	WGTACW	1 cut(s)	484
TfiI	GAWTC	1 cut(s)	602
Tru1I	TTAA	6 cut(s)	86, 105, 185, 452, 713, 722
Tru9I	TTAA	6 cut(s)	86, 105, 185, 452, 713, 722
TscAI	CASTG	3 cut(s)	181, 419, 648
TspDTI	ATGAA	3 cut(s)	615, 794, 850
TspGWI	ACGGA	1 cut(s)	262
TspRI	CASTG	3 cut(s)	181, 419, 648
Van91I	CCANNNNNTGG	1 cut(s)	49
VpaK11BI	GGWCC	2 cut(s)	208, 631
XapI	RAATTY	1 cut(s)	734
XbaI	TCTAGA	1 cut(s)	652
XspI	CTAG	2 cut(s)	482, 653

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.