Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0000780

Physical Location & Seq

Genomic Coordinates Forward (+)

56575351 .. 56586982

Gene Structure 11632 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG432500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGATTGACGGCGTTATAGAACTGCTCCGTCAGATGATCATGTTCAAGGTCCACGTGAGAGATGTGAAACTGACGCTGGAGTGTTTGAAACCAGTAATCCAAGAGATATCAGAGTATAACAAGTTGTTGAATAATCTACCAATGGAGGAGGAGCTAGCACTGCAGGACTTGAAATTGCAAATGGAGGCGGGCGCTAATCTGGTTCGAAAGTGTTCCAAGGTTGGTGCCTGGAGTTTCTGCAAAAAGTATAAGTACAGCAACCAACTCTTTCAACTGGATCAATCGCTTCAAACACTGTTGCATTTGCTCGAAGTTCAGAAAACAAGGGATGTCCAGGAGACCTTAGTTTCCGTAAAGAACATAGAGACTGTGGTCCAGCGAATTGAAGGCAATATTTCTGCCATGCAGAGTAATCAATCCGCAACGTACAACACAGATAAGAGCGCTGCCGCCACAAACTTCTTCGTTTTCTCCAATGACGCCAAGCTCCGAGCTTCCCTCACCGACGACACCATCGTCGGCGGCCCCAGCCTCAACGGCTTGGTTCTAGTCGTCAAAAATCCCGGTGTGTTCATTGTCGACTACAACGTCCCCAAAAAGCAAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

202

Amino Acids

22.81

Weight (kDa)

8.36

Isoelectric Point (pI)

38.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	5 - 125	1.1e-18	Arabidopsis broad-spectrum mildew resistance protein RPW8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000780)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g32810 FvH4_5g32810 FvH4_5g32820 FvH4_5g32830
malus_domestica	MD02G1165800.v1.1 MD15G1022900.v1.1 MD15G1277300.v1.1
prunus_persica	Prupe.5G127600_v2.0.a1
pyrus_communis	pycom02g13140 pycom15g24060 pycom15g24100 pycom15g24130
rosa_chinensis	RchiOBHm_Chr2g0143661 RchiOBHm_Chr7g0230541 RchiOBHm_Chr7g0230551 RchiOBHm_Chr7g0230651 RchiOBHm_Chr7g0230701
rosa_laevigata	RLG00000001482 RLG00000001487 RLG00000002333 RLG00000020057
rosa_multiflora	Rmu_sc0002222.1_g000006 Rmu_sc0002799.1_g000008 Rmu_sc0002799.1_g000010 Rmu_sc0002799.1_g000011 Rmu_sc0002799.1_g000013 Rmu_sc0007883.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101570 Rroxscaffold_3G00229820 Rroxscaffold_3G00229840 Rroxscaffold_3G00229950 Rroxscaffold_3G00230000 Rroxscaffold_3G00230010 Rroxscaffold_3G00230020 Rroxscaffold_3G00230030
rosa_rugosa	Rorug02G0384500 Rorug07G0261400 Rorug07G0261500 Rorug07G0261600 Rorug07G0261700 Rorug07G0261900
rosa_samantha	Rh2AG169200 Rh2AG436600 Rh2BG444200 Rh2CG422900 Rh2DG177700 Rh2DG454500 Rh5BG005200 Rh7AG321600 Rh7AG410000 Rh7AG410100 Rh7AG412600 Rh7AG412700 Rh7AG412800 Rh7AG413700 Rh7AG413800 Rh7CG338100 Rh7CG430500 Rh7CG430600 Rh7CG430800 Rh7CG432500 Rh7CG432600 Rh7DG319700 Rh7DG408100 Rh7DG408200 Rh7DG408300 Rh7DG408400 Rh7DG408500 Rh7DG409300
rosa_wichuraiana	Rw7G034330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	515, 587
AccB1I	GGYRCC	1 cut(s)	224
AccI	GTMKAC	1 cut(s)	579
AciI	CCGC	4 cut(s)	188, 420, 450, 522
AclWI	GGATC	1 cut(s)	285
AcvI	CACGTG	1 cut(s)	55
AcyI	GRCGYC	1 cut(s)	480
AfaI	GTAC	2 cut(s)	254, 428
AfeI	AGCGCT	1 cut(s)	445
AgsI	TTSAA	7 cut(s)	46, 88, 130, 172, 272, 290, 386
AjnI	CCWGG	2 cut(s)	227, 333
AluBI	AGCT	3 cut(s)	154, 487, 494
AluI	AGCT	3 cut(s)	154, 487, 494
Alw26I	GTCTC	2 cut(s)	332, 359
AlwI	GGATC	1 cut(s)	285
Aor51HI	AGCGCT	1 cut(s)	445
AoxI	GGCC	1 cut(s)	523
ApeKI	GCWGC	1 cut(s)	446
Asp700I	GAANNNNTTC	1 cut(s)	211
AspLEI	GCGC	2 cut(s)	194, 446
AspS9I	GGNCC	3 cut(s)	49, 373, 524
AsuC2I	CCSGG	1 cut(s)	564
AsuHPI	GGTGA	1 cut(s)	493
AsuII	TTCGAA	1 cut(s)	205
AsuNHI	GCTAGC	1 cut(s)	154
AvaII	GGWCC	2 cut(s)	49, 373
BanI	GGYRCC	1 cut(s)	224
BbrPI	CACGTG	1 cut(s)	55
BbvI	GCAGC	1 cut(s)	433
BccI	CCATC	1 cut(s)	521
BceAI	ACGGC	2 cut(s)	25, 553
BciT130I	CCWGG	2 cut(s)	229, 335
BclI	TGATCA	1 cut(s)	36
BcnI	CCSGG	1 cut(s)	564
BcoDI	GTCTC	2 cut(s)	332, 359
BfaI	CTAG	2 cut(s)	155, 548
BfmI	CTRYAG	1 cut(s)	161
BfoI	RGCGCY	2 cut(s)	195, 447
BglI	GCCNNNNNGGC	1 cut(s)	537
BisI	GCNGC	3 cut(s)	447, 450, 523
BlsI	GCNGC	3 cut(s)	448, 451, 524
Bme1390I	CCNGG	3 cut(s)	229, 335, 564
Bme18I	GGWCC	2 cut(s)	49, 373
BmgT120I	GGNCC	3 cut(s)	49, 373, 524
BmiI	GGNNCC	2 cut(s)	226, 526
BmrFI	CCNGG	3 cut(s)	229, 335, 564
BmtI	GCTAGC	1 cut(s)	158
BoxI	GACNNNNGTC	1 cut(s)	371
BplI	GAGNNNNNCTC	2 cut(s)	483, 515
BpmI	CTGGAG	2 cut(s)	98, 250
Bpu14I	TTCGAA	1 cut(s)	205
BpuMI	CCSGG	1 cut(s)	564
BsaAI	YACGTR	1 cut(s)	55
BsaHI	GRCGYC	1 cut(s)	480
BsaI	GGTCTC	1 cut(s)	332
BsaJI	CCNNGG	1 cut(s)	216
Bse1I	ACTGG	2 cut(s)	92, 279
BseBI	CCWGG	2 cut(s)	229, 335
BseDI	CCNNGG	1 cut(s)	216
BseGI	GGATG	1 cut(s)	334
BseNI	ACTGG	2 cut(s)	92, 279
BseRI	GAGGAG	2 cut(s)	161, 164
BseXI	GCAGC	1 cut(s)	433
BseYI	CCCAGC	1 cut(s)	527
BshFI	GGCC	1 cut(s)	525
BshNI	GGYRCC	1 cut(s)	224
BsiSI	CCGG	1 cut(s)	564
BslFI	GGGAC	1 cut(s)	575
BsmAI	GTCTC	2 cut(s)	332, 359
BsmFI	GGGAC	1 cut(s)	575
BsnI	GGCC	1 cut(s)	525
Bso31I	GGTCTC	1 cut(s)	332
Bsp119I	TTCGAA	1 cut(s)	205
Bsp143I	GATC	2 cut(s)	36, 277
BspACI	CCGC	4 cut(s)	188, 420, 450, 522
BspANI	GGCC	1 cut(s)	525
BspLI	GGNNCC	2 cut(s)	226, 526
BspMAI	CTGCAG	1 cut(s)	165
BspOI	GCTAGC	1 cut(s)	158
BspPI	GGATC	1 cut(s)	285
BspT104I	TTCGAA	1 cut(s)	205
BspT107I	GGYRCC	1 cut(s)	224
BspTNI	GGTCTC	1 cut(s)	332
BsrI	ACTGG	2 cut(s)	92, 279
BssECI	CCNNGG	1 cut(s)	216
BssMI	GATC	2 cut(s)	36, 277
BssNI	GRCGYC	1 cut(s)	480
BssT1I	CCWWGG	1 cut(s)	216
Bst2UI	CCWGG	2 cut(s)	229, 335
Bst4CI	ACNGT	2 cut(s)	297, 370
BstACI	GRCGYC	1 cut(s)	480
BstBAI	YACGTR	1 cut(s)	55
BstBI	TTCGAA	1 cut(s)	205
BstC8I	GCNNGC	2 cut(s)	156, 190
BstDEI	CTNAG	1 cut(s)	343
BstF5I	GGATG	1 cut(s)	334
BstH2I	RGCGCY	2 cut(s)	195, 447
BstHHI	GCGC	2 cut(s)	194, 446
BstKTI	GATC	2 cut(s)	39, 280
BstMAI	GTCTC	2 cut(s)	332, 359
BstMBI	GATC	2 cut(s)	36, 277
BstMWI	GCNNNNNNNGC	3 cut(s)	160, 528, 537
BstNI	CCWGG	2 cut(s)	229, 335
BstPAI	GACNNNNGTC	1 cut(s)	371
BstSCI	CCNGG	3 cut(s)	227, 333, 562
BstSFI	CTRYAG	1 cut(s)	161
BstV1I	GCAGC	1 cut(s)	433
BsuRI	GGCC	1 cut(s)	525
BtsCI	GGATG	1 cut(s)	334
BtsI	GCAGTG	1 cut(s)	158
BtsIMutI	CAGTG	2 cut(s)	158, 293
Cac8I	GCNNGC	2 cut(s)	156, 190
CfoI	GCGC	2 cut(s)	194, 446
Cfr13I	GGNCC	3 cut(s)	49, 373, 524
CseI	GACGC	2 cut(s)	82, 488
Csp6I	GTAC	2 cut(s)	253, 427
CviAII	CATG	2 cut(s)	40, 403
CviJI	RGCY	6 cut(s)	154, 487, 494, 525, 531, 540
CviKI_1	RGCY	6 cut(s)	154, 487, 494, 525, 531, 540
CviQI	GTAC	2 cut(s)	253, 427
DdeI	CTNAG	1 cut(s)	343
DpnI	GATC	2 cut(s)	38, 279
DpnII	GATC	2 cut(s)	36, 277
DrdI	GACNNNNNNGTC	2 cut(s)	515, 587
DseDI	GACNNNNNNGTC	2 cut(s)	515, 587
Eco130I	CCWWGG	1 cut(s)	216
Eco31I	GGTCTC	1 cut(s)	332
Eco32I	GATATC	1 cut(s)	108
Eco47I	GGWCC	2 cut(s)	49, 373
Eco47III	AGCGCT	1 cut(s)	445
Eco72I	CACGTG	1 cut(s)	55
EcoRII	CCWGG	2 cut(s)	227, 333
EcoRV	GATATC	1 cut(s)	108
EcoT14I	CCWWGG	1 cut(s)	216
ErhI	CCWWGG	1 cut(s)	216
FaeI	CATG	2 cut(s)	43, 406
FaiI	YATR	6 cut(s)	17, 41, 117, 249, 362, 404
FaqI	GGGAC	1 cut(s)	575
FatI	CATG	2 cut(s)	39, 402
FauI	CCCGC	1 cut(s)	181
FbaI	TGATCA	1 cut(s)	36
FblI	GTMKAC	1 cut(s)	579
Fnu4HI	GCNGC	3 cut(s)	447, 450, 523
FokI	GGATG	1 cut(s)	341
Fsp4HI	GCNGC	3 cut(s)	447, 450, 523
FspBI	CTAG	2 cut(s)	155, 548
GlaI	GCGC	2 cut(s)	193, 445
GluI	GCNGC	3 cut(s)	447, 450, 523
GsaI	CCCAGC	1 cut(s)	531
GsuI	CTGGAG	2 cut(s)	98, 250
HaeII	RGCGCY	2 cut(s)	195, 447
HaeIII	GGCC	1 cut(s)	525
HapII	CCGG	1 cut(s)	564
HgaI	GACGC	2 cut(s)	82, 488
HhaI	GCGC	2 cut(s)	194, 446
Hin1I	GRCGYC	1 cut(s)	480
Hin1II	CATG	2 cut(s)	43, 406
Hin6I	GCGC	2 cut(s)	192, 444
HinP1I	GCGC	2 cut(s)	192, 444
HincII	GTYRAC	1 cut(s)	580
HindII	GTYRAC	1 cut(s)	580
HpaII	CCGG	1 cut(s)	564
HphI	GGTGA	1 cut(s)	493
Hpy166II	GTNNAC	2 cut(s)	52, 580
Hpy188I	TCNGA	4 cut(s)	33, 112, 318, 491
Hpy8I	GTNNAC	2 cut(s)	52, 580
Hpy99I	CGWCG	2 cut(s)	509, 521
HpyAV	CCTTC	1 cut(s)	380
HpyCH4III	ACNGT	2 cut(s)	297, 370
HpyCH4IV	ACGT	3 cut(s)	54, 425, 588
HpyCH4V	TGCA	5 cut(s)	163, 178, 240, 301, 406
HpyF10VI	GCNNNNNNNGC	3 cut(s)	160, 528, 537
HpyF3I	CTNAG	1 cut(s)	343
HpySE526I	ACGT	3 cut(s)	54, 425, 588
Hsp92I	GRCGYC	1 cut(s)	480
Hsp92II	CATG	2 cut(s)	43, 406
HspAI	GCGC	2 cut(s)	192, 444
Ksp22I	TGATCA	1 cut(s)	36
Kzo9I	GATC	2 cut(s)	36, 277
LmnI	GCTCC	3 cut(s)	30, 151, 492
Lsp1109I	GCAGC	1 cut(s)	433
MaeI	CTAG	2 cut(s)	155, 548
MaeII	ACGT	3 cut(s)	54, 425, 588
MalI	GATC	2 cut(s)	38, 279
MboI	GATC	2 cut(s)	36, 277
MboII	GAAGA	1 cut(s)	454
MluCI	AATT	2 cut(s)	173, 381
MnlI	CCTC	5 cut(s)	139, 142, 178, 509, 542
MroXI	GAANNNNTTC	1 cut(s)	211
MspI	CCGG	1 cut(s)	564
MspR9I	CCNGG	3 cut(s)	229, 335, 564
MvaI	CCWGG	2 cut(s)	229, 335
MwoI	GCNNNNNNNGC	3 cut(s)	160, 528, 537
NciI	CCSGG	1 cut(s)	564
NdeII	GATC	2 cut(s)	36, 277
NheI	GCTAGC	1 cut(s)	154
NlaIII	CATG	2 cut(s)	43, 406
NlaIV	GGNNCC	2 cut(s)	226, 526
NspV	TTCGAA	1 cut(s)	205
PcsI	WCGNNNNNNNCGW	2 cut(s)	513, 585
PdmI	GAANNNNTTC	1 cut(s)	211
PfoI	TCCNGGA	1 cut(s)	333
PkrI	GCNGC	3 cut(s)	448, 451, 524
PmaCI	CACGTG	1 cut(s)	55
PmlI	CACGTG	1 cut(s)	55
Ppu21I	YACGTR	1 cut(s)	55
PshAI	GACNNNNGTC	1 cut(s)	371
Psp6I	CCWGG	2 cut(s)	227, 333
PspCI	CACGTG	1 cut(s)	55
PspFI	CCCAGC	1 cut(s)	527
PspGI	CCWGG	2 cut(s)	227, 333
PspN4I	GGNNCC	2 cut(s)	226, 526
PspPI	GGNCC	3 cut(s)	49, 373, 524
PstI	CTGCAG	1 cut(s)	165
RsaI	GTAC	2 cut(s)	254, 428
RsaNI	GTAC	2 cut(s)	253, 427
SalI	GTCGAC	1 cut(s)	578
SatI	GCNGC	3 cut(s)	447, 450, 523
Sau3AI	GATC	2 cut(s)	36, 277
Sau96I	GGNCC	3 cut(s)	49, 373, 524
ScrFI	CCNGG	3 cut(s)	229, 335, 564
SfcI	CTRYAG	1 cut(s)	161
SfuI	TTCGAA	1 cut(s)	205
SinI	GGWCC	2 cut(s)	49, 373
Sse9I	AATT	2 cut(s)	173, 381
SsiI	CCGC	4 cut(s)	188, 420, 450, 522
SspI	AATATT	1 cut(s)	394
SspMI	CTAG	2 cut(s)	155, 548
StyD4I	CCNGG	3 cut(s)	227, 333, 562
StyI	CCWWGG	1 cut(s)	216
TaaI	ACNGT	2 cut(s)	297, 370
TaiI	ACGT	3 cut(s)	57, 428, 591
TaqI	TCGA	3 cut(s)	205, 309, 579
TasI	AATT	2 cut(s)	173, 381
TatI	WGTACW	1 cut(s)	252
TauI	GCSGC	2 cut(s)	452, 525
TscAI	CASTG	2 cut(s)	165, 300
TseI	GCWGC	1 cut(s)	446
TspDTI	ATGAA	1 cut(s)	562
TspGWI	ACGGA	2 cut(s)	17, 340
TspRI	CASTG	2 cut(s)	165, 300
VpaK11BI	GGWCC	2 cut(s)	49, 373
XmiI	GTMKAC	1 cut(s)	579
XmnI	GAANNNNTTC	1 cut(s)	211
XspI	CTAG	2 cut(s)	155, 548

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.