Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000780

Physical Location & Seq

Genomic Coordinates Forward (+)

23702694 .. 23703077

Gene Structure 384 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g32820.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGATGGAGAAGATGATGATGTTCAAGGACTACGTCAGAGATATGAAACTCACGCTCGAGTGCTTGAAACCAGTGATCTCCGAGATAGCAGAATACAATAAGGTGCTGAATCAACCAATGGAGGAATTGCAGGATTTAAAGTCGCAGCTGGAGGACGGGGAAGACTTGGTTCGCAAGTGCTCCAAGGTTAGTGCCTGGAGTTTATTAAAAAAATACAGATACACCAACCGGCTTGATCAACTGGACAAATCGCTTCACACTGTCTTGCATGTACTTGAGCTGCAAAAGACGAGGGATCTCAGGGAGACCTTGGCTACGGTCAGGAAGATTGAGACCGTCGTTCAGCGAATTGGAGGAAATATTTCTTCCATGAGCGCGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

128

Amino Acids

14.87

Weight (kDa)

8.52

Isoelectric Point (pI)

38.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	3 - 114	8.2e-25	Arabidopsis broad-spectrum mildew resistance protein RPW8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000780)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g32810 FvH4_5g32810 FvH4_5g32820 FvH4_5g32830
malus_domestica	MD02G1165800.v1.1 MD15G1022900.v1.1 MD15G1277300.v1.1
prunus_persica	Prupe.5G127600_v2.0.a1
pyrus_communis	pycom02g13140 pycom15g24060 pycom15g24100 pycom15g24130
rosa_chinensis	RchiOBHm_Chr2g0143661 RchiOBHm_Chr7g0230541 RchiOBHm_Chr7g0230551 RchiOBHm_Chr7g0230651 RchiOBHm_Chr7g0230701
rosa_laevigata	RLG00000001482 RLG00000001487 RLG00000002333 RLG00000020057
rosa_multiflora	Rmu_sc0002222.1_g000006 Rmu_sc0002799.1_g000008 Rmu_sc0002799.1_g000010 Rmu_sc0002799.1_g000011 Rmu_sc0002799.1_g000013 Rmu_sc0007883.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101570 Rroxscaffold_3G00229820 Rroxscaffold_3G00229840 Rroxscaffold_3G00229950 Rroxscaffold_3G00230000 Rroxscaffold_3G00230010 Rroxscaffold_3G00230020 Rroxscaffold_3G00230030
rosa_rugosa	Rorug02G0384500 Rorug07G0261400 Rorug07G0261500 Rorug07G0261600 Rorug07G0261700 Rorug07G0261900
rosa_samantha	Rh2AG169200 Rh2AG436600 Rh2BG444200 Rh2CG422900 Rh2DG177700 Rh2DG454500 Rh5BG005200 Rh7AG321600 Rh7AG410000 Rh7AG410100 Rh7AG412600 Rh7AG412700 Rh7AG412800 Rh7AG413700 Rh7AG413800 Rh7CG338100 Rh7CG430500 Rh7CG430600 Rh7CG430800 Rh7CG432500 Rh7CG432600 Rh7DG319700 Rh7DG408100 Rh7DG408200 Rh7DG408300 Rh7DG408400 Rh7DG408500 Rh7DG409300
rosa_wichuraiana	Rw7G034330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	377
AclWI	GGATC	1 cut(s)	303
AfaI	GTAC	1 cut(s)	273
AgsI	TTSAA	2 cut(s)	25, 67
AjnI	CCWGG	1 cut(s)	194
AluBI	AGCT	2 cut(s)	148, 280
AluI	AGCT	2 cut(s)	148, 280
Alw21I	GWGCWC	1 cut(s)	182
Alw26I	GTCTC	2 cut(s)	299, 326
AlwI	GGATC	1 cut(s)	303
Ama87I	CYCGRG	1 cut(s)	56
ApeKI	GCWGC	2 cut(s)	145, 280
Asp700I	GAANNNNTTC	1 cut(s)	361
AspLEI	GCGC	1 cut(s)	377
AvaI	CYCGRG	1 cut(s)	56
BbsI	GAAGAC	1 cut(s)	168
Bbv12I	GWGCWC	1 cut(s)	182
BbvI	GCAGC	2 cut(s)	157, 267
BciT130I	CCWGG	1 cut(s)	196
BclI	TGATCA	1 cut(s)	235
BcoDI	GTCTC	2 cut(s)	299, 326
BisI	GCNGC	2 cut(s)	146, 281
BlsI	GCNGC	2 cut(s)	147, 282
Bme1390I	CCNGG	1 cut(s)	196
BmeT110I	CYCGRG	1 cut(s)	56
BmrFI	CCNGG	1 cut(s)	196
BpiI	GAAGAC	1 cut(s)	168
BpmI	CTGGAG	2 cut(s)	170, 217
BpuEI	CTTGAG	1 cut(s)	296
BsaI	GGTCTC	2 cut(s)	299, 326
BsaJI	CCNNGG	2 cut(s)	183, 309
Bse118I	RCCGGY	1 cut(s)	228
Bse1I	ACTGG	2 cut(s)	71, 246
BseBI	CCWGG	1 cut(s)	196
BseDI	CCNNGG	2 cut(s)	183, 309
BseMII	CTCAG	1 cut(s)	313
BseNI	ACTGG	2 cut(s)	71, 246
BseXI	GCAGC	2 cut(s)	157, 267
Bsh1236I	CGCG	1 cut(s)	377
BsiHKAI	GWGCWC	1 cut(s)	182
BsiHKCI	CYCGRG	1 cut(s)	56
BsiSI	CCGG	1 cut(s)	229
BsmAI	GTCTC	2 cut(s)	299, 326
Bso31I	GGTCTC	2 cut(s)	299, 326
BsoBI	CYCGRG	1 cut(s)	56
Bsp1286I	GDGCHC	1 cut(s)	182
Bsp143I	GATC	3 cut(s)	75, 235, 295
BspCNI	CTCAG	1 cut(s)	312
BspFNI	CGCG	1 cut(s)	377
BspPI	GGATC	1 cut(s)	303
BspTNI	GGTCTC	2 cut(s)	299, 326
BsrFI	RCCGGY	1 cut(s)	228
BsrI	ACTGG	2 cut(s)	71, 246
BssAI	RCCGGY	1 cut(s)	228
BssECI	CCNNGG	2 cut(s)	183, 309
BssMI	GATC	3 cut(s)	75, 235, 295
BssT1I	CCWWGG	2 cut(s)	183, 309
Bst2UI	CCWGG	1 cut(s)	196
Bst4CI	ACNGT	3 cut(s)	262, 319, 337
BstDEI	CTNAG	1 cut(s)	299
BstFNI	CGCG	1 cut(s)	377
BstHHI	GCGC	1 cut(s)	377
BstKTI	GATC	3 cut(s)	78, 238, 298
BstMAI	GTCTC	2 cut(s)	299, 326
BstMBI	GATC	3 cut(s)	75, 235, 295
BstNI	CCWGG	1 cut(s)	196
BstNSI	RCATGY	1 cut(s)	272
BstSCI	CCNGG	1 cut(s)	194
BstUI	CGCG	1 cut(s)	377
BstV1I	GCAGC	2 cut(s)	157, 267
BstV2I	GAAGAC	1 cut(s)	168
BstX2I	RGATCY	1 cut(s)	295
BstYI	RGATCY	1 cut(s)	295
BtsIMutI	CAGTG	2 cut(s)	78, 258
CfoI	GCGC	1 cut(s)	377
Cfr10I	RCCGGY	1 cut(s)	228
Csp6I	GTAC	1 cut(s)	272
CviAII	CATG	2 cut(s)	269, 370
CviJI	RGCY	4 cut(s)	148, 232, 280, 314
CviKI_1	RGCY	4 cut(s)	148, 232, 280, 314
CviQI	GTAC	1 cut(s)	272
DdeI	CTNAG	1 cut(s)	299
DpnI	GATC	3 cut(s)	77, 237, 297
DpnII	GATC	3 cut(s)	75, 235, 295
DraI	TTTAAA	1 cut(s)	138
Eco130I	CCWWGG	2 cut(s)	183, 309
Eco31I	GGTCTC	2 cut(s)	299, 326
Eco88I	CYCGRG	1 cut(s)	56
EcoRII	CCWGG	1 cut(s)	194
EcoT14I	CCWWGG	2 cut(s)	183, 309
ErhI	CCWWGG	2 cut(s)	183, 309
FaeI	CATG	2 cut(s)	272, 373
FaiI	YATR	3 cut(s)	44, 270, 371
FatI	CATG	2 cut(s)	268, 369
FbaI	TGATCA	1 cut(s)	235
Fnu4HI	GCNGC	2 cut(s)	146, 281
Fsp4HI	GCNGC	2 cut(s)	146, 281
GlaI	GCGC	1 cut(s)	376
GluI	GCNGC	2 cut(s)	146, 281
GsuI	CTGGAG	2 cut(s)	170, 217
HapII	CCGG	1 cut(s)	229
HhaI	GCGC	1 cut(s)	377
Hin1II	CATG	2 cut(s)	272, 373
Hin6I	GCGC	1 cut(s)	375
HinP1I	GCGC	1 cut(s)	375
HinfI	GANTC	1 cut(s)	109
HpaII	CCGG	1 cut(s)	229
Hpy188I	TCNGA	2 cut(s)	38, 82
Hpy188III	TCNNGA	1 cut(s)	322
Hpy99I	CGWCG	1 cut(s)	341
HpyCH4III	ACNGT	3 cut(s)	262, 319, 337
HpyCH4IV	ACGT	1 cut(s)	33
HpyCH4V	TGCA	3 cut(s)	130, 268, 283
HpyF3I	CTNAG	1 cut(s)	299
HpySE526I	ACGT	1 cut(s)	33
Hsp92II	CATG	2 cut(s)	272, 373
HspAI	GCGC	1 cut(s)	375
Ksp22I	TGATCA	1 cut(s)	235
Kzo9I	GATC	3 cut(s)	75, 235, 295
LmnI	GCTCC	1 cut(s)	185
LpnPI	CCDG	9 cut(s)	84, 116, 134, 181, 208, 227, 242, 286, 307
Lsp1109I	GCAGC	2 cut(s)	157, 267
MaeII	ACGT	1 cut(s)	33
MalI	GATC	3 cut(s)	77, 237, 297
MboI	GATC	3 cut(s)	75, 235, 295
MboII	GAAGA	4 cut(s)	22, 173, 337, 357
MflI	RGATCY	1 cut(s)	295
MhlI	GDGCHC	1 cut(s)	182
MluCI	AATT	3 cut(s)	125, 348, 379
MnlI	CCTC	4 cut(s)	115, 145, 285, 347
MroXI	GAANNNNTTC	1 cut(s)	361
MseI	TTAA	2 cut(s)	137, 206
MspA1I	CMGCKG	1 cut(s)	148
MspI	CCGG	1 cut(s)	229
MspR9I	CCNGG	1 cut(s)	196
MvaI	CCWGG	1 cut(s)	196
MvnI	CGCG	1 cut(s)	377
NdeII	GATC	3 cut(s)	75, 235, 295
NlaIII	CATG	2 cut(s)	272, 373
NspI	RCATGY	1 cut(s)	272
PaeR7I	CTCGAG	1 cut(s)	56
PdmI	GAANNNNTTC	1 cut(s)	361
PfeI	GAWTC	1 cut(s)	109
PflFI	GACNNNGTC	1 cut(s)	32
PkrI	GCNGC	2 cut(s)	147, 282
Psp6I	CCWGG	1 cut(s)	194
PspGI	CCWGG	1 cut(s)	194
PspXI	VCTCGAGB	1 cut(s)	56
PsuI	RGATCY	1 cut(s)	295
PsyI	GACNNNGTC	1 cut(s)	32
PvuII	CAGCTG	1 cut(s)	148
RsaI	GTAC	1 cut(s)	273
RsaNI	GTAC	1 cut(s)	272
SaqAI	TTAA	2 cut(s)	137, 206
SatI	GCNGC	2 cut(s)	146, 281
Sau3AI	GATC	3 cut(s)	75, 235, 295
ScrFI	CCNGG	1 cut(s)	196
SduI	GDGCHC	1 cut(s)	182
SetI	ASST	6 cut(s)	36, 105, 150, 189, 282, 311
Sfr274I	CTCGAG	1 cut(s)	56
SlaI	CTCGAG	1 cut(s)	56
SmlI	CTYRAG	2 cut(s)	56, 275
SmoI	CTYRAG	2 cut(s)	56, 275
Sse9I	AATT	3 cut(s)	125, 348, 379
SspI	AATATT	1 cut(s)	361
StyD4I	CCNGG	1 cut(s)	194
StyI	CCWWGG	2 cut(s)	183, 309
TaaI	ACNGT	3 cut(s)	262, 319, 337
TaiI	ACGT	1 cut(s)	36
TaqI	TCGA	1 cut(s)	57
TasI	AATT	3 cut(s)	125, 348, 379
TatI	WGTACW	1 cut(s)	271
TfiI	GAWTC	1 cut(s)	109
Tru1I	TTAA	2 cut(s)	137, 206
Tru9I	TTAA	2 cut(s)	137, 206
TscAI	CASTG	2 cut(s)	78, 265
TseI	GCWGC	2 cut(s)	145, 280
TspDTI	ATGAA	1 cut(s)	59
TspRI	CASTG	2 cut(s)	78, 265
Tth111I	GACNNNGTC	1 cut(s)	32
XceI	RCATGY	1 cut(s)	272
XhoI	CTCGAG	1 cut(s)	56
XmnI	GAANNNNTTC	1 cut(s)	361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.