Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000780

Physical Location & Seq

Genomic Coordinates Forward (+)

54285191 .. 54285571

Gene Structure 381 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20671

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGATGTTCAAGGTCCATGTGAGAGATGTGAAGCTGACACTCGACTGTCTGAAACCAGTGATCGACGAGATATCGGAATATAACAAGGTATTGAATCAGCCAATGGATGAACTGCAGGACTTGCAATTGCATATTGAGGAGGGAAGAGATCTGGTTCGAAAGTGCTCCAAGGTTGGTGCCTGGAGTTTCTGCAAAAAGTACAGATACACCACCCAACTTCATCGACACGATAAATTGCTGCACACGCTCTTGCATCTACTGGAACTGCAGAAAACAAGGGATATCAGGGAGACCTTGGTTTCGGTAAGGAACATAGAGACCGTCGTCCAGCGAATTGAAGGCAATATTTGTGTCAGGCAAAATCAATCTGAAACTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

NB-ARC RPW8

Protein Analysis

126

Amino Acids

14.97

Weight (kDa)

8.37

Isoelectric Point (pI)

44.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	2 - 109	3.1e-19	Arabidopsis broad-spectrum mildew resistance protein RPW8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000780)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g32810 FvH4_5g32810 FvH4_5g32820 FvH4_5g32830
malus_domestica	MD02G1165800.v1.1 MD15G1022900.v1.1 MD15G1277300.v1.1
prunus_persica	Prupe.5G127600_v2.0.a1
pyrus_communis	pycom02g13140 pycom15g24060 pycom15g24100 pycom15g24130
rosa_chinensis	RchiOBHm_Chr2g0143661 RchiOBHm_Chr7g0230541 RchiOBHm_Chr7g0230551 RchiOBHm_Chr7g0230651 RchiOBHm_Chr7g0230701
rosa_laevigata	RLG00000001482 RLG00000001487 RLG00000002333 RLG00000020057
rosa_multiflora	Rmu_sc0002222.1_g000006 Rmu_sc0002799.1_g000008 Rmu_sc0002799.1_g000010 Rmu_sc0002799.1_g000011 Rmu_sc0002799.1_g000013 Rmu_sc0007883.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101570 Rroxscaffold_3G00229820 Rroxscaffold_3G00229840 Rroxscaffold_3G00229950 Rroxscaffold_3G00230000 Rroxscaffold_3G00230010 Rroxscaffold_3G00230020 Rroxscaffold_3G00230030
rosa_rugosa	Rorug02G0384500 Rorug07G0261400 Rorug07G0261500 Rorug07G0261600 Rorug07G0261700 Rorug07G0261900
rosa_samantha	Rh2AG169200 Rh2AG436600 Rh2BG444200 Rh2CG422900 Rh2DG177700 Rh2DG454500 Rh5BG005200 Rh7AG321600 Rh7AG410000 Rh7AG410100 Rh7AG412600 Rh7AG412700 Rh7AG412800 Rh7AG413700 Rh7AG413800 Rh7CG338100 Rh7CG430500 Rh7CG430600 Rh7CG430800 Rh7CG432500 Rh7CG432600 Rh7DG319700 Rh7DG408100 Rh7DG408200 Rh7DG408300 Rh7DG408400 Rh7DG408500 Rh7DG409300
rosa_wichuraiana	Rw7G034330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	176
AfaI	GTAC	1 cut(s)	200
AgsI	TTSAA	3 cut(s)	10, 94, 338
AjnI	CCWGG	1 cut(s)	179
AluBI	AGCT	1 cut(s)	34
AluI	AGCT	1 cut(s)	34
Alw21I	GWGCWC	1 cut(s)	167
Alw26I	GTCTC	2 cut(s)	284, 311
ApeKI	GCWGC	1 cut(s)	238
ArsI	GACNNNNNNTTYG	2 cut(s)	283, 315
AspS9I	GGNCC	1 cut(s)	13
AsuII	TTCGAA	1 cut(s)	157
AvaII	GGWCC	1 cut(s)	13
BanI	GGYRCC	1 cut(s)	176
Bbv12I	GWGCWC	1 cut(s)	167
BbvI	GCAGC	1 cut(s)	225
BciT130I	CCWGG	1 cut(s)	181
BcoDI	GTCTC	2 cut(s)	284, 311
BfmI	CTRYAG	2 cut(s)	113, 266
BglII	AGATCT	1 cut(s)	148
BisI	GCNGC	1 cut(s)	239
BlsI	GCNGC	1 cut(s)	240
Bme1390I	CCNGG	1 cut(s)	181
Bme18I	GGWCC	1 cut(s)	13
BmgT120I	GGNCC	1 cut(s)	13
BmiI	GGNNCC	1 cut(s)	178
BmrFI	CCNGG	1 cut(s)	181
BmsI	GCATC	1 cut(s)	262
BoxI	GACNNNNGTC	1 cut(s)	323
BpmI	CTGGAG	1 cut(s)	202
Bpu14I	TTCGAA	1 cut(s)	157
BsaI	GGTCTC	2 cut(s)	284, 311
BsaJI	CCNNGG	2 cut(s)	168, 294
Bse1I	ACTGG	2 cut(s)	56, 264
BseBI	CCWGG	1 cut(s)	181
BseDI	CCNNGG	2 cut(s)	168, 294
BseGI	GGATG	1 cut(s)	112
BseNI	ACTGG	2 cut(s)	56, 264
BseRI	GAGGAG	1 cut(s)	152
BseXI	GCAGC	1 cut(s)	225
BsgI	GTGCAG	1 cut(s)	224
BshNI	GGYRCC	1 cut(s)	176
BsiHKAI	GWGCWC	1 cut(s)	167
BsmAI	GTCTC	2 cut(s)	284, 311
Bso31I	GGTCTC	2 cut(s)	284, 311
Bsp119I	TTCGAA	1 cut(s)	157
Bsp1286I	GDGCHC	1 cut(s)	167
Bsp143I	GATC	2 cut(s)	60, 148
BspLI	GGNNCC	1 cut(s)	178
BspMAI	CTGCAG	2 cut(s)	117, 270
BspT104I	TTCGAA	1 cut(s)	157
BspT107I	GGYRCC	1 cut(s)	176
BspTNI	GGTCTC	2 cut(s)	284, 311
BsrI	ACTGG	2 cut(s)	56, 264
BssECI	CCNNGG	2 cut(s)	168, 294
BssMI	GATC	2 cut(s)	60, 148
BssT1I	CCWWGG	2 cut(s)	168, 294
Bst2UI	CCWGG	1 cut(s)	181
Bst4CI	ACNGT	2 cut(s)	47, 322
Bst6I	CTCTTC	1 cut(s)	139
BstAPI	GCANNNNNTGC	1 cut(s)	121
BstBI	TTCGAA	1 cut(s)	157
BstF5I	GGATG	1 cut(s)	112
BstKTI	GATC	2 cut(s)	63, 151
BstMAI	GTCTC	2 cut(s)	284, 311
BstMBI	GATC	2 cut(s)	60, 148
BstMWI	GCNNNNNNNGC	2 cut(s)	121, 244
BstNI	CCWGG	1 cut(s)	181
BstPAI	GACNNNNGTC	1 cut(s)	323
BstSCI	CCNGG	1 cut(s)	179
BstSFI	CTRYAG	2 cut(s)	113, 266
BstV1I	GCAGC	1 cut(s)	225
BstX2I	RGATCY	1 cut(s)	148
BstYI	RGATCY	1 cut(s)	148
BtsCI	GGATG	1 cut(s)	112
BtsIMutI	CAGTG	1 cut(s)	63
Cfr13I	GGNCC	1 cut(s)	13
Csp6I	GTAC	1 cut(s)	199
CviAII	CATG	1 cut(s)	17
CviJI	RGCY	2 cut(s)	34, 100
CviKI_1	RGCY	2 cut(s)	34, 100
CviQI	GTAC	1 cut(s)	199
DpnI	GATC	2 cut(s)	62, 150
DpnII	GATC	2 cut(s)	60, 148
Eam1104I	CTCTTC	1 cut(s)	139
EarI	CTCTTC	1 cut(s)	139
Eco130I	CCWWGG	2 cut(s)	168, 294
Eco31I	GGTCTC	2 cut(s)	284, 311
Eco32I	GATATC	2 cut(s)	72, 283
Eco47I	GGWCC	1 cut(s)	13
EcoRII	CCWGG	1 cut(s)	179
EcoRV	GATATC	2 cut(s)	72, 283
EcoT14I	CCWWGG	2 cut(s)	168, 294
ErhI	CCWWGG	2 cut(s)	168, 294
FaeI	CATG	1 cut(s)	20
FaiI	YATR	4 cut(s)	18, 81, 132, 314
FatI	CATG	1 cut(s)	16
Fnu4HI	GCNGC	1 cut(s)	239
FokI	GGATG	1 cut(s)	119
Fsp4HI	GCNGC	1 cut(s)	239
GluI	GCNGC	1 cut(s)	239
GsuI	CTGGAG	1 cut(s)	202
Hin1II	CATG	1 cut(s)	20
HinfI	GANTC	1 cut(s)	94
Hpy188I	TCNGA	3 cut(s)	51, 76, 370
Hpy99I	CGWCG	2 cut(s)	68, 326
HpyAV	CCTTC	1 cut(s)	332
HpyCH4III	ACNGT	2 cut(s)	47, 322
HpyCH4V	TGCA	7 cut(s)	115, 124, 130, 192, 241, 253, 268
HpyF10VI	GCNNNNNNNGC	2 cut(s)	121, 244
Hsp92II	CATG	1 cut(s)	20
Kzo9I	GATC	2 cut(s)	60, 148
LmnI	GCTCC	1 cut(s)	170
LpnPI	CCDG	9 cut(s)	69, 101, 137, 166, 193, 245, 271, 340, 341
Lsp1109I	GCAGC	1 cut(s)	225
LweI	GCATC	1 cut(s)	262
MalI	GATC	2 cut(s)	62, 150
MboI	GATC	2 cut(s)	60, 148
MboII	GAAGA	1 cut(s)	156
MfeI	CAATTG	1 cut(s)	125
MflI	RGATCY	1 cut(s)	148
MhlI	GDGCHC	1 cut(s)	167
MluCI	AATT	4 cut(s)	125, 233, 333, 376
MnlI	CCTC	2 cut(s)	130, 133
MspR9I	CCNGG	1 cut(s)	181
MunI	CAATTG	1 cut(s)	125
MvaI	CCWGG	1 cut(s)	181
MwoI	GCNNNNNNNGC	2 cut(s)	121, 244
NdeII	GATC	2 cut(s)	60, 148
NlaIII	CATG	1 cut(s)	20
NlaIV	GGNNCC	1 cut(s)	178
NspV	TTCGAA	1 cut(s)	157
PfeI	GAWTC	1 cut(s)	94
PkrI	GCNGC	1 cut(s)	240
PshAI	GACNNNNGTC	1 cut(s)	323
Psp6I	CCWGG	1 cut(s)	179
PspGI	CCWGG	1 cut(s)	179
PspN4I	GGNNCC	1 cut(s)	178
PspPI	GGNCC	1 cut(s)	13
PstI	CTGCAG	2 cut(s)	117, 270
PsuI	RGATCY	1 cut(s)	148
RsaI	GTAC	1 cut(s)	200
RsaNI	GTAC	1 cut(s)	199
SatI	GCNGC	1 cut(s)	239
Sau3AI	GATC	2 cut(s)	60, 148
Sau96I	GGNCC	1 cut(s)	13
ScrFI	CCNGG	1 cut(s)	181
SduI	GDGCHC	1 cut(s)	167
SetI	ASST	5 cut(s)	15, 36, 90, 174, 296
SfaNI	GCATC	1 cut(s)	262
SfcI	CTRYAG	2 cut(s)	113, 266
SfuI	TTCGAA	1 cut(s)	157
SinI	GGWCC	1 cut(s)	13
Sse9I	AATT	4 cut(s)	125, 233, 333, 376
SspI	AATATT	1 cut(s)	346
StyD4I	CCNGG	1 cut(s)	179
StyI	CCWWGG	2 cut(s)	168, 294
TaaI	ACNGT	2 cut(s)	47, 322
TaqI	TCGA	4 cut(s)	42, 63, 157, 223
TasI	AATT	4 cut(s)	125, 233, 333, 376
TatI	WGTACW	1 cut(s)	198
TfiI	GAWTC	1 cut(s)	94
TscAI	CASTG	1 cut(s)	63
TseI	GCWGC	1 cut(s)	238
TspDTI	ATGAA	2 cut(s)	123, 209
TspRI	CASTG	1 cut(s)	63
VpaK11BI	GGWCC	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.