Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000780

Physical Location & Seq

Genomic Coordinates Forward (+)

60633874 .. 60634620

Gene Structure 747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020057

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGCCGGGGAGTTTGTCGGAGGGGCTGCTCTGGGAACAGCATTCAGTGCACTGTACGACGGCGTTAAAGAGCTGATTTCCAAGAATCACATATTCAAATCCCTCCTCGTAAACATGAAATCCAGTCTTGAGACTTTAAAACCGCTTATCCATCAAATAGCGCAGTCTAACGAGCTACTGTCTCTCCCAGAGGAGGAGCTGAAAGGCTTGGAAGCAGTAATGGAGGATGGCAAAGATCTTATCAGCAAGTGCTCGAAGATTCGGCAATGGAACATCTACAAGAAGTACGAGTACGCCAACAAACTTGTCGAGTGGGATCAGTCGCTTCGGAGACAGTTGGATGTACTGAAGGTGCAGGAGGCGAGGGACGTGAAGGAGAACACGGTTTTGTTGAGGACTATAGAGGCGGTGGTCAAACGAATCGAAGAGAATGTTGTGGTAAGAAATTATAGCTCTACAGTTGAAGCTCGTGATCTGGAGAGACGTGTTGTTGAGGATCCAGCTAATAAGAGTTTGGGTTCCGAAGAAGACAACGGAGAGGGTTGTTCTGGAAAGACAGAAGTATATGGCACTGCACTTTATAACTTCACTGCCGGTGGAGAGGATGAGTTGAATTTGAGTGCTGGAGATGAGGTTGAAATTGAGTATGAAGTCGACGACTGGTTTTATGTGAAGAAGAAACGCCCCGGGAAGGATGGGAAAGTGGCTGGTCTAGTCCCAGTCCTCTATGTGAGATATTTGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

NB-ARC RPW8

Protein Analysis

249

Amino Acids

27.89

Weight (kDa)

5.04

Isoelectric Point (pI)

46.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	4 - 133	8.5e-30	Arabidopsis broad-spectrum mildew resistance protein RPW8
SH3_1	PF00018	191 - 233	1.6e-06	SH3 domain
SH3_9	PF14604	192 - 244	9.6e-07	Variant SH3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000780)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g32810 FvH4_5g32810 FvH4_5g32820 FvH4_5g32830
malus_domestica	MD02G1165800.v1.1 MD15G1022900.v1.1 MD15G1277300.v1.1
prunus_persica	Prupe.5G127600_v2.0.a1
pyrus_communis	pycom02g13140 pycom15g24060 pycom15g24100 pycom15g24130
rosa_chinensis	RchiOBHm_Chr2g0143661 RchiOBHm_Chr7g0230541 RchiOBHm_Chr7g0230551 RchiOBHm_Chr7g0230651 RchiOBHm_Chr7g0230701
rosa_laevigata	RLG00000001482 RLG00000001487 RLG00000002333 RLG00000020057
rosa_multiflora	Rmu_sc0002222.1_g000006 Rmu_sc0002799.1_g000008 Rmu_sc0002799.1_g000010 Rmu_sc0002799.1_g000011 Rmu_sc0002799.1_g000013 Rmu_sc0007883.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101570 Rroxscaffold_3G00229820 Rroxscaffold_3G00229840 Rroxscaffold_3G00229950 Rroxscaffold_3G00230000 Rroxscaffold_3G00230010 Rroxscaffold_3G00230020 Rroxscaffold_3G00230030
rosa_rugosa	Rorug02G0384500 Rorug07G0261400 Rorug07G0261500 Rorug07G0261600 Rorug07G0261700 Rorug07G0261900
rosa_samantha	Rh2AG169200 Rh2AG436600 Rh2BG444200 Rh2CG422900 Rh2DG177700 Rh2DG454500 Rh5BG005200 Rh7AG321600 Rh7AG410000 Rh7AG410100 Rh7AG412600 Rh7AG412700 Rh7AG412800 Rh7AG413700 Rh7AG413800 Rh7CG338100 Rh7CG430500 Rh7CG430600 Rh7CG430800 Rh7CG432500 Rh7CG432600 Rh7DG319700 Rh7DG408100 Rh7DG408200 Rh7DG408300 Rh7DG408400 Rh7DG408500 Rh7DG409300
rosa_wichuraiana	Rw7G034330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	582
AccI	GTMKAC	1 cut(s)	654
AciI	CCGC	2 cut(s)	143, 407
AclWI	GGATC	3 cut(s)	324, 491, 504
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	613
AcuI	CTGAAG	1 cut(s)	368
AfaI	GTAC	4 cut(s)	56, 287, 293, 345
AfiI	CCNNNNNNNGG	2 cut(s)	193, 691
AflIII	ACRYGT	1 cut(s)	484
AgsI	TTSAA	4 cut(s)	97, 464, 613, 638
AjiI	CACGTC	2 cut(s)	370, 485
AluBI	AGCT	6 cut(s)	73, 175, 199, 453, 467, 503
AluI	AGCT	6 cut(s)	73, 175, 199, 453, 467, 503
Alw21I	GWGCWC	2 cut(s)	52, 254
Alw26I	GTCTC	4 cut(s)	125, 186, 325, 475
Alw44I	GTGCAC	1 cut(s)	48
AlwI	GGATC	3 cut(s)	324, 491, 504
Ama87I	CYCGRG	1 cut(s)	686
AoxI	GGCC	1 cut(s)	3
ApaLI	GTGCAC	1 cut(s)	48
ApeKI	GCWGC	1 cut(s)	26
ApoI	RAATTY	1 cut(s)	613
AspLEI	GCGC	1 cut(s)	163
AsuC2I	CCSGG	3 cut(s)	7, 687, 688
AvaI	CYCGRG	1 cut(s)	686
BaeGI	GKGCMC	1 cut(s)	52
BamHI	GGATCC	1 cut(s)	496
BarI	GAAGNNNNNNTAC	2 cut(s)	275, 307
BauI	CACGAG	1 cut(s)	468
BbsI	GAAGAC	1 cut(s)	534
Bbv12I	GWGCWC	2 cut(s)	52, 254
BbvI	GCAGC	1 cut(s)	13
BccI	CCATC	3 cut(s)	159, 221, 689
BceAI	ACGGC	1 cut(s)	76
BcnI	CCSGG	3 cut(s)	7, 687, 688
BcoDI	GTCTC	4 cut(s)	125, 186, 325, 475
BfaI	CTAG	1 cut(s)	713
BfmI	CTRYAG	2 cut(s)	399, 456
BglII	AGATCT	1 cut(s)	235
BisI	GCNGC	1 cut(s)	27
BlsI	GCNGC	1 cut(s)	28
Bme1390I	CCNGG	3 cut(s)	7, 687, 688
BmeT110I	CYCGRG	1 cut(s)	686
BmgBI	CACGTC	2 cut(s)	370, 485
BmiI	GGNNCC	2 cut(s)	498, 520
BmrFI	CCNGG	3 cut(s)	7, 687, 688
BmrI	ACTGGG	1 cut(s)	713
BmuI	ACTGGG	1 cut(s)	713
BpiI	GAAGAC	1 cut(s)	534
BpmI	CTGGAG	2 cut(s)	497, 645
BpuEI	CTTGAG	1 cut(s)	149
BpuMI	CCSGG	3 cut(s)	7, 687, 688
BsaJI	CCNNGG	3 cut(s)	6, 685, 686
BsaXI	ACNNNNNCTCC	4 cut(s)	168, 198, 618, 648
Bsc4I	CCNNNNNNNGG	2 cut(s)	193, 691
Bse118I	RCCGGY	1 cut(s)	593
Bse1I	ACTGG	3 cut(s)	123, 665, 719
Bse3DI	GCAATG	1 cut(s)	272
BseDI	CCNNGG	3 cut(s)	6, 685, 686
BseGI	GGATG	4 cut(s)	232, 346, 610, 700
BseLI	CCNNNNNNNGG	2 cut(s)	193, 691
BseMI	GCAATG	1 cut(s)	272
BseNI	ACTGG	3 cut(s)	123, 665, 719
BseRI	GAGGAG	3 cut(s)	95, 206, 209
BseSI	GKGCMC	1 cut(s)	52
BseXI	GCAGC	1 cut(s)	13
BsgI	GTGCAG	2 cut(s)	374, 558
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	2 cut(s)	52, 254
BsiHKCI	CYCGRG	1 cut(s)	686
BsiSI	CCGG	3 cut(s)	6, 594, 687
BslFI	GGGAC	2 cut(s)	380, 701
BslI	CCNNNNNNNGG	2 cut(s)	193, 691
BsmAI	GTCTC	4 cut(s)	125, 186, 325, 475
BsmBI	CGTCTC	1 cut(s)	475
BsmFI	GGGAC	2 cut(s)	380, 701
BsmI	GAATGC	1 cut(s)	41
BsnI	GGCC	1 cut(s)	5
BsoBI	CYCGRG	1 cut(s)	686
Bsp1286I	GDGCHC	2 cut(s)	52, 254
Bsp143I	GATC	4 cut(s)	235, 316, 472, 496
BspACI	CCGC	2 cut(s)	143, 407
BspANI	GGCC	1 cut(s)	5
BspHI	TCATGA	1 cut(s)	743
BspLI	GGNNCC	2 cut(s)	498, 520
BspPI	GGATC	3 cut(s)	324, 491, 504
BsrDI	GCAATG	1 cut(s)	272
BsrFI	RCCGGY	1 cut(s)	593
BsrI	ACTGG	3 cut(s)	123, 665, 719
BssAI	RCCGGY	1 cut(s)	593
BssECI	CCNNGG	3 cut(s)	6, 685, 686
BssMI	GATC	4 cut(s)	235, 316, 472, 496
BssSI	CACGAG	1 cut(s)	468
Bst2BI	CACGAG	1 cut(s)	468
Bst4CI	ACNGT	5 cut(s)	54, 180, 336, 385, 460
Bst6I	CTCTTC	1 cut(s)	420
BstAPI	GCANNNNNTGC	1 cut(s)	47
BstF5I	GGATG	4 cut(s)	232, 346, 610, 700
BstHHI	GCGC	1 cut(s)	163
BstKTI	GATC	4 cut(s)	238, 319, 475, 499
BstMAI	GTCTC	4 cut(s)	125, 186, 325, 475
BstMBI	GATC	4 cut(s)	235, 316, 472, 496
BstMWI	GCNNNNNNNGC	1 cut(s)	47
BstSCI	CCNGG	3 cut(s)	5, 685, 686
BstSFI	CTRYAG	2 cut(s)	399, 456
BstSLI	GKGCMC	1 cut(s)	52
BstV1I	GCAGC	1 cut(s)	13
BstV2I	GAAGAC	1 cut(s)	534
BstX2I	RGATCY	2 cut(s)	235, 496
BstYI	RGATCY	2 cut(s)	235, 496
BsuRI	GGCC	1 cut(s)	5
BtrI	CACGTC	2 cut(s)	370, 485
BtsCI	GGATG	4 cut(s)	232, 346, 610, 700
BtsI	GCAGTG	2 cut(s)	570, 588
BtsIMutI	CAGTG	4 cut(s)	50, 52, 570, 588
CciI	TCATGA	1 cut(s)	743
CfoI	GCGC	1 cut(s)	163
Cfr10I	RCCGGY	1 cut(s)	593
Cfr9I	CCCGGG	1 cut(s)	686
Csp6I	GTAC	4 cut(s)	55, 286, 292, 344
CviAII	CATG	2 cut(s)	115, 744
CviQI	GTAC	4 cut(s)	55, 286, 292, 344
DpnI	GATC	4 cut(s)	237, 318, 474, 498
DpnII	GATC	4 cut(s)	235, 316, 472, 496
DraI	TTTAAA	1 cut(s)	138
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	420
EarI	CTCTTC	1 cut(s)	420
Eco57I	CTGAAG	1 cut(s)	368
Eco88I	CYCGRG	1 cut(s)	686
Esp3I	CGTCTC	1 cut(s)	475
FaeI	CATG	2 cut(s)	118, 747
FaqI	GGGAC	2 cut(s)	380, 701
FatI	CATG	2 cut(s)	114, 743
FblI	GTMKAC	1 cut(s)	654
Fnu4HI	GCNGC	1 cut(s)	27
FokI	GGATG	4 cut(s)	239, 353, 617, 707
Fsp4HI	GCNGC	1 cut(s)	27
FspBI	CTAG	1 cut(s)	713
GlaI	GCGC	1 cut(s)	162
GluI	GCNGC	1 cut(s)	27
GsuI	CTGGAG	2 cut(s)	497, 645
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	3 cut(s)	6, 594, 687
HhaI	GCGC	1 cut(s)	163
Hin1II	CATG	2 cut(s)	118, 747
Hin6I	GCGC	1 cut(s)	161
HinP1I	GCGC	1 cut(s)	161
HincII	GTYRAC	1 cut(s)	655
HindII	GTYRAC	1 cut(s)	655
HinfI	GANTC	3 cut(s)	85, 259, 420
HpaII	CCGG	3 cut(s)	6, 594, 687
Hpy166II	GTNNAC	3 cut(s)	50, 112, 655
Hpy188I	TCNGA	3 cut(s)	20, 330, 523
Hpy188III	TCNNGA	5 cut(s)	128, 470, 476, 549, 744
Hpy8I	GTNNAC	3 cut(s)	50, 112, 655
Hpy99I	CGWCG	2 cut(s)	62, 659
HpyAV	CCTTC	3 cut(s)	343, 367, 685
HpyCH4III	ACNGT	5 cut(s)	54, 180, 336, 385, 460
HpyCH4IV	ACGT	2 cut(s)	369, 484
HpyCH4V	TGCA	3 cut(s)	50, 355, 575
HpyF10VI	GCNNNNNNNGC	1 cut(s)	47
HpySE526I	ACGT	2 cut(s)	369, 484
Hsp92II	CATG	2 cut(s)	118, 747
HspAI	GCGC	1 cut(s)	161
Kzo9I	GATC	4 cut(s)	235, 316, 472, 496
LmnI	GCTCC	1 cut(s)	196
Lsp1109I	GCAGC	1 cut(s)	13
MaeI	CTAG	1 cut(s)	713
MaeII	ACGT	2 cut(s)	369, 484
MalI	GATC	4 cut(s)	237, 318, 474, 498
MboI	GATC	4 cut(s)	235, 316, 472, 496
MboII	GAAGA	6 cut(s)	268, 437, 536, 539, 685, 688
MflI	RGATCY	2 cut(s)	235, 496
MhlI	GDGCHC	2 cut(s)	52, 254
MluCI	AATT	3 cut(s)	445, 613, 639
MmeI	TCCRAC	1 cut(s)	318
MseI	TTAA	2 cut(s)	66, 137
MspI	CCGG	3 cut(s)	6, 594, 687
MspR9I	CCNGG	3 cut(s)	7, 687, 688
Mva1269I	GAATGC	1 cut(s)	41
MwoI	GCNNNNNNNGC	1 cut(s)	47
NciI	CCSGG	3 cut(s)	7, 687, 688
NdeII	GATC	4 cut(s)	235, 316, 472, 496
NlaIII	CATG	2 cut(s)	118, 747
NlaIV	GGNNCC	2 cut(s)	498, 520
PagI	TCATGA	1 cut(s)	743
PctI	GAATGC	1 cut(s)	41
PfeI	GAWTC	3 cut(s)	85, 259, 420
PkrI	GCNGC	1 cut(s)	28
PsiI	TTATAA	1 cut(s)	582
PspN4I	GGNNCC	2 cut(s)	498, 520
PsuI	RGATCY	2 cut(s)	235, 496
RsaI	GTAC	4 cut(s)	56, 287, 293, 345
RsaNI	GTAC	4 cut(s)	55, 286, 292, 344
SalI	GTCGAC	1 cut(s)	653
SaqAI	TTAA	2 cut(s)	66, 137
SatI	GCNGC	1 cut(s)	27
Sau3AI	GATC	4 cut(s)	235, 316, 472, 496
ScrFI	CCNGG	3 cut(s)	7, 687, 688
SduI	GDGCHC	2 cut(s)	52, 254
SfcI	CTRYAG	2 cut(s)	399, 456
SmaI	CCCGGG	1 cut(s)	688
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
Sse9I	AATT	3 cut(s)	445, 613, 639
SsiI	CCGC	2 cut(s)	143, 407
SspMI	CTAG	1 cut(s)	713
StyD4I	CCNGG	3 cut(s)	5, 685, 686
TaaI	ACNGT	5 cut(s)	54, 180, 336, 385, 460
TaiI	ACGT	2 cut(s)	372, 487
TaqI	TCGA	4 cut(s)	254, 309, 423, 654
TasI	AATT	3 cut(s)	445, 613, 639
TatI	WGTACW	1 cut(s)	343
TfiI	GAWTC	3 cut(s)	85, 259, 420
Tru1I	TTAA	2 cut(s)	66, 137
Tru9I	TTAA	2 cut(s)	66, 137
TscAI	CASTG	4 cut(s)	52, 57, 577, 595
TseI	GCWGC	1 cut(s)	26
TspDTI	ATGAA	2 cut(s)	131, 663
TspGWI	ACGGA	1 cut(s)	549
TspMI	CCCGGG	1 cut(s)	686
TspRI	CASTG	4 cut(s)	52, 57, 577, 595
VneI	GTGCAC	1 cut(s)	48
XapI	RAATTY	1 cut(s)	613
XmaI	CCCGGG	1 cut(s)	686
XmiI	GTMKAC	1 cut(s)	654
XspI	CTAG	1 cut(s)	713

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.