Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000780

Physical Location & Seq

Genomic Coordinates Forward (+)

32306398 .. 32307425

Gene Structure 1028 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002333

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGTTGCAGGAGATAAGGGACGTGAAGGAGATATTGGATCTGTCGAGGAAAAGTCGCAAGGAGCTTGAAGAAGTGAAGGAGGCACAGTTGAGTATGCACAAGTTACTGCAGCAGATAGCAGGAGTAGTTGTAATGGAAGAGGCCTCAACTTCGGCTACTGCAAGAGGAGATGCTATTGAGATGGTGCCGAATCAAAATGAAGGGAATGGCGGCATTCAAGTGGCATCATTAGATGGAGGGACAGGGACTGCTCTAGGAGCAATATTTGGGATGCTACTTGAACTTGTTATAGAAGTGAAGGACAAGAATGTGATGTTTAAGCCTCTGCTCCAAGATCTCAAATCCACTTTAGAATCCTTAAAACCATTTGTCGAGGAGATGGCACATCATAACAAGGTATTGCATCTCCCACAGGAGGAACTCAAAAGATTTGCAGTGGAAATGGAGAATGGAGTAAAGCTCGTTTGCAAGTGCTCTAAGGTTCGTTTGTGGGCAAGCTACAAAAAGTACGAATACACCAACAAACTTCTTGGATTGGATGAGTTTTACCAGCGACAGGCAAGTCTACTGAGAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

193

Amino Acids

21.67

Weight (kDa)

5.91

Isoelectric Point (pI)

42.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	82 - 181	4.2e-28	Arabidopsis broad-spectrum mildew resistance protein RPW8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000780)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g32810 FvH4_5g32810 FvH4_5g32820 FvH4_5g32830
malus_domestica	MD02G1165800.v1.1 MD15G1022900.v1.1 MD15G1277300.v1.1
prunus_persica	Prupe.5G127600_v2.0.a1
pyrus_communis	pycom02g13140 pycom15g24060 pycom15g24100 pycom15g24130
rosa_chinensis	RchiOBHm_Chr2g0143661 RchiOBHm_Chr7g0230541 RchiOBHm_Chr7g0230551 RchiOBHm_Chr7g0230651 RchiOBHm_Chr7g0230701
rosa_laevigata	RLG00000001482 RLG00000001487 RLG00000002333 RLG00000020057
rosa_multiflora	Rmu_sc0002222.1_g000006 Rmu_sc0002799.1_g000008 Rmu_sc0002799.1_g000010 Rmu_sc0002799.1_g000011 Rmu_sc0002799.1_g000013 Rmu_sc0007883.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101570 Rroxscaffold_3G00229820 Rroxscaffold_3G00229840 Rroxscaffold_3G00229950 Rroxscaffold_3G00230000 Rroxscaffold_3G00230010 Rroxscaffold_3G00230020 Rroxscaffold_3G00230030
rosa_rugosa	Rorug02G0384500 Rorug07G0261400 Rorug07G0261500 Rorug07G0261600 Rorug07G0261700 Rorug07G0261900
rosa_samantha	Rh2AG169200 Rh2AG436600 Rh2BG444200 Rh2CG422900 Rh2DG177700 Rh2DG454500 Rh5BG005200 Rh7AG321600 Rh7AG410000 Rh7AG410100 Rh7AG412600 Rh7AG412700 Rh7AG412800 Rh7AG413700 Rh7AG413800 Rh7CG338100 Rh7CG430500 Rh7CG430600 Rh7CG430800 Rh7CG432500 Rh7CG432600 Rh7DG319700 Rh7DG408100 Rh7DG408200 Rh7DG408300 Rh7DG408400 Rh7DG408500 Rh7DG409300
rosa_wichuraiana	Rw7G034330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	561
AccB1I	GGYRCC	1 cut(s)	184
AccI	GTMKAC	1 cut(s)	565
AciI	CCGC	1 cut(s)	210
AclWI	GGATC	1 cut(s)	45
AfaI	GTAC	1 cut(s)	509
AfiI	CCNNNNNNNGG	2 cut(s)	415, 556
AgsI	TTSAA	3 cut(s)	68, 218, 281
AjiI	CACGTC	1 cut(s)	22
AjuI	GAANNNNNNNTTGG	2 cut(s)	17, 49
AluBI	AGCT	3 cut(s)	64, 460, 498
AluI	AGCT	3 cut(s)	64, 460, 498
Alw21I	GWGCWC	1 cut(s)	476
AlwI	GGATC	1 cut(s)	45
AlwNI	CAGNNNCTG	1 cut(s)	248
AoxI	GGCC	1 cut(s)	141
ApeKI	GCWGC	1 cut(s)	109
BanI	GGYRCC	1 cut(s)	184
Bbv12I	GWGCWC	1 cut(s)	476
BbvI	GCAGC	1 cut(s)	121
BccI	CCATC	3 cut(s)	175, 227, 373
BfaI	CTAG	1 cut(s)	254
BfmI	CTRYAG	1 cut(s)	107
BglII	AGATCT	1 cut(s)	334
BisI	GCNGC	2 cut(s)	110, 211
BlsI	GCNGC	2 cut(s)	111, 212
BmgBI	CACGTC	1 cut(s)	22
BmiI	GGNNCC	1 cut(s)	186
BmsI	GCATC	4 cut(s)	160, 233, 261, 412
BplI	GAGNNNNNCTC	2 cut(s)	444, 476
BsaXI	ACNNNNNCTCC	4 cut(s)	71, 101, 114, 144
Bsc4I	CCNNNNNNNGG	2 cut(s)	415, 556
BseGI	GGATG	2 cut(s)	276, 544
BseLI	CCNNNNNNNGG	2 cut(s)	415, 556
BseMII	CTCAG	1 cut(s)	560
BseRI	GAGGAG	2 cut(s)	180, 389
BseXI	GCAGC	1 cut(s)	121
BshFI	GGCC	1 cut(s)	143
BshNI	GGYRCC	1 cut(s)	184
BsiHKAI	GWGCWC	1 cut(s)	476
BslFI	GGGAC	3 cut(s)	32, 253, 259
BslI	CCNNNNNNNGG	2 cut(s)	415, 556
BsmFI	GGGAC	3 cut(s)	32, 253, 259
BsmI	GAATGC	1 cut(s)	213
BsnI	GGCC	1 cut(s)	143
Bsp1286I	GDGCHC	1 cut(s)	476
Bsp143I	GATC	2 cut(s)	37, 334
BspACI	CCGC	1 cut(s)	210
BspANI	GGCC	1 cut(s)	143
BspCNI	CTCAG	1 cut(s)	561
BspLI	GGNNCC	1 cut(s)	186
BspMAI	CTGCAG	1 cut(s)	111
BspPI	GGATC	1 cut(s)	45
BspT107I	GGYRCC	1 cut(s)	184
BssMI	GATC	2 cut(s)	37, 334
Bst4CI	ACNGT	1 cut(s)	87
Bst6I	CTCTTC	1 cut(s)	132
BstC8I	GCNNGC	1 cut(s)	496
BstDEI	CTNAG	2 cut(s)	477, 569
BstF5I	GGATG	2 cut(s)	276, 544
BstKTI	GATC	2 cut(s)	40, 337
BstMBI	GATC	2 cut(s)	37, 334
BstMWI	GCNNNNNNNGC	1 cut(s)	257
BstSFI	CTRYAG	1 cut(s)	107
BstV1I	GCAGC	1 cut(s)	121
BstX2I	RGATCY	2 cut(s)	37, 334
BstYI	RGATCY	2 cut(s)	37, 334
BsuRI	GGCC	1 cut(s)	143
BtrI	CACGTC	1 cut(s)	22
BtsCI	GGATG	2 cut(s)	276, 544
BtsI	GCAGTG	1 cut(s)	441
BtsIMutI	CAGTG	1 cut(s)	441
Cac8I	GCNNGC	1 cut(s)	496
CaiI	CAGNNNCTG	1 cut(s)	248
Csp6I	GTAC	1 cut(s)	508
CviJI	RGCY	6 cut(s)	64, 143, 155, 322, 460, 498
CviKI_1	RGCY	6 cut(s)	64, 143, 155, 322, 460, 498
CviQI	GTAC	1 cut(s)	508
DdeI	CTNAG	2 cut(s)	477, 569
DpnI	GATC	2 cut(s)	39, 336
DpnII	GATC	2 cut(s)	37, 334
DrdI	GACNNNNNNGTC	1 cut(s)	561
DseDI	GACNNNNNNGTC	1 cut(s)	561
Eam1104I	CTCTTC	1 cut(s)	132
EarI	CTCTTC	1 cut(s)	132
Eco147I	AGGCCT	1 cut(s)	143
FaiI	YATR	3 cut(s)	95, 290, 390
FaqI	GGGAC	3 cut(s)	32, 253, 259
FblI	GTMKAC	1 cut(s)	565
Fnu4HI	GCNGC	2 cut(s)	110, 211
FokI	GGATG	2 cut(s)	283, 551
Fsp4HI	GCNGC	2 cut(s)	110, 211
FspBI	CTAG	1 cut(s)	254
GluI	GCNGC	2 cut(s)	110, 211
HaeIII	GGCC	1 cut(s)	143
HinfI	GANTC	2 cut(s)	190, 353
Hpy166II	GTNNAC	1 cut(s)	566
Hpy8I	GTNNAC	1 cut(s)	566
HpyAV	CCTTC	4 cut(s)	19, 70, 194, 292
HpyCH4III	ACNGT	1 cut(s)	87
HpyCH4IV	ACGT	1 cut(s)	21
HpyCH4V	TGCA	7 cut(s)	7, 97, 109, 161, 403, 434, 468
HpyF10VI	GCNNNNNNNGC	1 cut(s)	257
HpyF3I	CTNAG	2 cut(s)	477, 569
HpySE526I	ACGT	1 cut(s)	21
Kzo9I	GATC	2 cut(s)	37, 334
LmnI	GCTCC	3 cut(s)	61, 257, 333
LpnPI	CCDG	5 cut(s)	105, 228, 398, 542, 563
Lsp1109I	GCAGC	1 cut(s)	121
LweI	GCATC	4 cut(s)	160, 233, 261, 412
MaeI	CTAG	1 cut(s)	254
MaeII	ACGT	1 cut(s)	21
MaeIII	GTNAC	1 cut(s)	102
MalI	GATC	2 cut(s)	39, 336
MboI	GATC	2 cut(s)	37, 334
MboII	GAAGA	2 cut(s)	80, 149
MflI	RGATCY	2 cut(s)	37, 334
MhlI	GDGCHC	1 cut(s)	476
MnlI	CCTC	9 cut(s)	39, 73, 133, 154, 158, 230, 333, 367, 409
MseI	TTAA	2 cut(s)	318, 359
MslI	CAYNNNNRTG	1 cut(s)	218
Mva1269I	GAATGC	1 cut(s)	213
MwoI	GCNNNNNNNGC	1 cut(s)	257
NdeII	GATC	2 cut(s)	37, 334
NlaIV	GGNNCC	1 cut(s)	186
PceI	AGGCCT	1 cut(s)	143
PctI	GAATGC	1 cut(s)	213
PfeI	GAWTC	2 cut(s)	190, 353
PkrI	GCNGC	2 cut(s)	111, 212
PspN4I	GGNNCC	1 cut(s)	186
PstI	CTGCAG	1 cut(s)	111
PstNI	CAGNNNCTG	1 cut(s)	248
PsuI	RGATCY	2 cut(s)	37, 334
RsaI	GTAC	1 cut(s)	509
RsaNI	GTAC	1 cut(s)	508
RseI	CAYNNNNRTG	1 cut(s)	218
SaqAI	TTAA	2 cut(s)	318, 359
SatI	GCNGC	2 cut(s)	110, 211
Sau3AI	GATC	2 cut(s)	37, 334
SduI	GDGCHC	1 cut(s)	476
SetI	ASST	6 cut(s)	24, 66, 399, 462, 483, 500
SfaNI	GCATC	4 cut(s)	160, 233, 261, 412
SfcI	CTRYAG	1 cut(s)	107
SmiMI	CAYNNNNRTG	1 cut(s)	218
SseBI	AGGCCT	1 cut(s)	143
SsiI	CCGC	1 cut(s)	210
SspI	AATATT	1 cut(s)	264
SspMI	CTAG	1 cut(s)	254
StuI	AGGCCT	1 cut(s)	143
TaaI	ACNGT	1 cut(s)	87
TaiI	ACGT	1 cut(s)	24
TaqI	TCGA	2 cut(s)	44, 372
TauI	GCSGC	1 cut(s)	213
TfiI	GAWTC	2 cut(s)	190, 353
Tru1I	TTAA	2 cut(s)	318, 359
Tru9I	TTAA	2 cut(s)	318, 359
TscAI	CASTG	1 cut(s)	441
TseI	GCWGC	1 cut(s)	109
TspDTI	ATGAA	1 cut(s)	213
TspRI	CASTG	1 cut(s)	441
XmiI	GTMKAC	1 cut(s)	565
XspI	CTAG	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.