Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0000780

Physical Location & Seq

Genomic Coordinates Forward (+)

57341781 .. 57342636

Gene Structure 856 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG408500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGCTCGACAGCGTTATAGCAGTGATGGAGAAGATGATCATGTTCAAGGACCGCGTCAGAGATGTGAAACTGACGCTCGAGTGCTTGAAACCAGTGATCCACGAGATAGCGGAATACAACAAGGTGTTGAATCAACCGATGGAGGAATTACAGGATTTAAAGGCAAAACTGGAGGAGGGCGAAGATTTGGTACGAAAGTGCTCCAAGGTTGGTCCCTGGAGTTTCTGCAAGAGGTACAGATGCACCAACCAGCTTGATCAACTGGACATATCGCTTCACTCACTCTTGCATGTACTGGAACTGCAAAAGACGAGGGATCTCAGGGACACCTTGGTTACTGTCAGGAACATAGAGACCGTCGTCCGGCGAATTGAAGGAAATATTTCTTACATGCAAATTAGTCAATCTGCAACTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

NB-ARC RPW8

Protein Analysis

139

Amino Acids

16.23

Weight (kDa)

6.31

Isoelectric Point (pI)

53.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	2 - 120	1.2e-22	Arabidopsis broad-spectrum mildew resistance protein RPW8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000780)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g32810 FvH4_5g32810 FvH4_5g32820 FvH4_5g32830
malus_domestica	MD02G1165800.v1.1 MD15G1022900.v1.1 MD15G1277300.v1.1
prunus_persica	Prupe.5G127600_v2.0.a1
pyrus_communis	pycom02g13140 pycom15g24060 pycom15g24100 pycom15g24130
rosa_chinensis	RchiOBHm_Chr2g0143661 RchiOBHm_Chr7g0230541 RchiOBHm_Chr7g0230551 RchiOBHm_Chr7g0230651 RchiOBHm_Chr7g0230701
rosa_laevigata	RLG00000001482 RLG00000001487 RLG00000002333 RLG00000020057
rosa_multiflora	Rmu_sc0002222.1_g000006 Rmu_sc0002799.1_g000008 Rmu_sc0002799.1_g000010 Rmu_sc0002799.1_g000011 Rmu_sc0002799.1_g000013 Rmu_sc0007883.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101570 Rroxscaffold_3G00229820 Rroxscaffold_3G00229840 Rroxscaffold_3G00229950 Rroxscaffold_3G00230000 Rroxscaffold_3G00230010 Rroxscaffold_3G00230020 Rroxscaffold_3G00230030
rosa_rugosa	Rorug02G0384500 Rorug07G0261400 Rorug07G0261500 Rorug07G0261600 Rorug07G0261700 Rorug07G0261900
rosa_samantha	Rh2AG169200 Rh2AG436600 Rh2BG444200 Rh2CG422900 Rh2DG177700 Rh2DG454500 Rh5BG005200 Rh7AG321600 Rh7AG410000 Rh7AG410100 Rh7AG412600 Rh7AG412700 Rh7AG412800 Rh7AG413700 Rh7AG413800 Rh7CG338100 Rh7CG430500 Rh7CG430600 Rh7CG430800 Rh7CG432500 Rh7CG432600 Rh7DG319700 Rh7DG408100 Rh7DG408200 Rh7DG408300 Rh7DG408400 Rh7DG408500 Rh7DG409300
rosa_wichuraiana	Rw7G034330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	54
AciI	CCGC	2 cut(s)	52, 110
AclWI	GGATC	2 cut(s)	91, 324
AfaI	GTAC	3 cut(s)	192, 236, 294
AfiI	CCNNNNNNNGG	1 cut(s)	363
AgsI	TTSAA	4 cut(s)	46, 88, 130, 374
AjnI	CCWGG	1 cut(s)	215
AluBI	AGCT	1 cut(s)	253
AluI	AGCT	1 cut(s)	253
Alw21I	GWGCWC	1 cut(s)	203
Alw26I	GTCTC	1 cut(s)	347
AlwI	GGATC	2 cut(s)	91, 324
Ama87I	CYCGRG	1 cut(s)	77
Asp700I	GAANNNNTTC	1 cut(s)	382
AspS9I	GGNCC	2 cut(s)	49, 212
AvaI	CYCGRG	1 cut(s)	77
AvaII	GGWCC	2 cut(s)	49, 212
BaeI	ACNNNNGTAYC	2 cut(s)	182, 215
BarI	GAAGNNNNNNTAC	2 cut(s)	174, 206
BauI	CACGAG	1 cut(s)	101
Bbv12I	GWGCWC	1 cut(s)	203
BccI	CCATC	2 cut(s)	19, 133
BciT130I	CCWGG	1 cut(s)	217
BclI	TGATCA	2 cut(s)	36, 256
BcoDI	GTCTC	1 cut(s)	347
Bme1390I	CCNGG	1 cut(s)	217
Bme18I	GGWCC	2 cut(s)	49, 212
BmeT110I	CYCGRG	1 cut(s)	77
BmgT120I	GGNCC	2 cut(s)	49, 212
BmiI	GGNNCC	1 cut(s)	214
BmrFI	CCNGG	1 cut(s)	217
BmsI	GCATC	1 cut(s)	230
BoxI	GACNNNNGTC	1 cut(s)	359
BpmI	CTGGAG	2 cut(s)	191, 238
BsaI	GGTCTC	1 cut(s)	347
BsaJI	CCNNGG	3 cut(s)	204, 215, 330
Bsc4I	CCNNNNNNNGG	1 cut(s)	363
Bse1I	ACTGG	4 cut(s)	92, 174, 267, 300
BseBI	CCWGG	1 cut(s)	217
BseDI	CCNNGG	3 cut(s)	204, 215, 330
BseLI	CCNNNNNNNGG	1 cut(s)	363
BseMII	CTCAG	1 cut(s)	334
BseNI	ACTGG	4 cut(s)	92, 174, 267, 300
BseRI	GAGGAG	1 cut(s)	188
Bsh1236I	CGCG	1 cut(s)	54
BsiHKAI	GWGCWC	1 cut(s)	203
BsiHKCI	CYCGRG	1 cut(s)	77
BsiSI	CCGG	1 cut(s)	364
BslFI	GGGAC	2 cut(s)	198, 338
BslI	CCNNNNNNNGG	1 cut(s)	363
BsmAI	GTCTC	1 cut(s)	347
BsmFI	GGGAC	2 cut(s)	198, 338
Bso31I	GGTCTC	1 cut(s)	347
BsoBI	CYCGRG	1 cut(s)	77
Bsp1286I	GDGCHC	1 cut(s)	203
Bsp143I	GATC	4 cut(s)	36, 96, 256, 316
BspACI	CCGC	2 cut(s)	52, 110
BspCNI	CTCAG	1 cut(s)	333
BspFNI	CGCG	1 cut(s)	54
BspLI	GGNNCC	1 cut(s)	214
BspPI	GGATC	2 cut(s)	91, 324
BspTNI	GGTCTC	1 cut(s)	347
BsrI	ACTGG	4 cut(s)	92, 174, 267, 300
BssECI	CCNNGG	3 cut(s)	204, 215, 330
BssMI	GATC	4 cut(s)	36, 96, 256, 316
BssSI	CACGAG	1 cut(s)	101
BssT1I	CCWWGG	2 cut(s)	204, 330
Bst2BI	CACGAG	1 cut(s)	101
Bst2UI	CCWGG	1 cut(s)	217
Bst4CI	ACNGT	2 cut(s)	340, 358
BstDEI	CTNAG	1 cut(s)	320
BstFNI	CGCG	1 cut(s)	54
BstKTI	GATC	4 cut(s)	39, 99, 259, 319
BstMAI	GTCTC	1 cut(s)	347
BstMBI	GATC	4 cut(s)	36, 96, 256, 316
BstNI	CCWGG	1 cut(s)	217
BstNSI	RCATGY	2 cut(s)	293, 394
BstPAI	GACNNNNGTC	1 cut(s)	359
BstSCI	CCNGG	1 cut(s)	215
BstUI	CGCG	1 cut(s)	54
BstX2I	RGATCY	1 cut(s)	316
BstYI	RGATCY	1 cut(s)	316
BtsI	GCAGTG	1 cut(s)	27
BtsIMutI	CAGTG	2 cut(s)	27, 99
Cfr13I	GGNCC	2 cut(s)	49, 212
CseI	GACGC	2 cut(s)	43, 82
Csp6I	GTAC	3 cut(s)	191, 235, 293
CviAII	CATG	3 cut(s)	40, 290, 391
CviJI	RGCY	1 cut(s)	253
CviKI_1	RGCY	1 cut(s)	253
CviQI	GTAC	3 cut(s)	191, 235, 293
DdeI	CTNAG	1 cut(s)	320
DpnI	GATC	4 cut(s)	38, 98, 258, 318
DpnII	GATC	4 cut(s)	36, 96, 256, 316
DraI	TTTAAA	1 cut(s)	159
Eco130I	CCWWGG	2 cut(s)	204, 330
Eco31I	GGTCTC	1 cut(s)	347
Eco47I	GGWCC	2 cut(s)	49, 212
Eco88I	CYCGRG	1 cut(s)	77
EcoRII	CCWGG	1 cut(s)	215
EcoT14I	CCWWGG	2 cut(s)	204, 330
ErhI	CCWWGG	2 cut(s)	204, 330
FaeI	CATG	3 cut(s)	43, 293, 394
FaiI	YATR	6 cut(s)	17, 41, 269, 291, 350, 392
FaqI	GGGAC	2 cut(s)	198, 338
FatI	CATG	3 cut(s)	39, 289, 390
FbaI	TGATCA	2 cut(s)	36, 256
GsuI	CTGGAG	2 cut(s)	191, 238
HapII	CCGG	1 cut(s)	364
HgaI	GACGC	2 cut(s)	43, 82
Hin1II	CATG	3 cut(s)	43, 293, 394
HinfI	GANTC	1 cut(s)	130
HpaII	CCGG	1 cut(s)	364
Hpy188I	TCNGA	1 cut(s)	59
Hpy188III	TCNNGA	1 cut(s)	343
Hpy99I	CGWCG	1 cut(s)	362
HpyAV	CCTTC	1 cut(s)	368
HpyCH4III	ACNGT	2 cut(s)	340, 358
HpyCH4V	TGCA	6 cut(s)	228, 243, 289, 304, 394, 410
HpyF3I	CTNAG	1 cut(s)	320
Hsp92II	CATG	3 cut(s)	43, 293, 394
Ksp22I	TGATCA	2 cut(s)	36, 256
Kzo9I	GATC	4 cut(s)	36, 96, 256, 316
LmnI	GCTCC	1 cut(s)	206
LweI	GCATC	1 cut(s)	230
MaeIII	GTNAC	1 cut(s)	334
MalI	GATC	4 cut(s)	38, 98, 258, 318
MboI	GATC	4 cut(s)	36, 96, 256, 316
MboII	GAAGA	2 cut(s)	43, 194
MflI	RGATCY	1 cut(s)	316
MhlI	GDGCHC	1 cut(s)	203
MluCI	AATT	3 cut(s)	146, 369, 396
MnlI	CCTC	5 cut(s)	136, 166, 169, 225, 306
MroXI	GAANNNNTTC	1 cut(s)	382
MseI	TTAA	1 cut(s)	158
MspI	CCGG	1 cut(s)	364
MspR9I	CCNGG	1 cut(s)	217
MvaI	CCWGG	1 cut(s)	217
MvnI	CGCG	1 cut(s)	54
NdeII	GATC	4 cut(s)	36, 96, 256, 316
NlaIII	CATG	3 cut(s)	43, 293, 394
NlaIV	GGNNCC	1 cut(s)	214
NspI	RCATGY	2 cut(s)	293, 394
PaeR7I	CTCGAG	1 cut(s)	77
PdmI	GAANNNNTTC	1 cut(s)	382
PfeI	GAWTC	1 cut(s)	130
PflFI	GACNNNGTC	1 cut(s)	53
PshAI	GACNNNNGTC	1 cut(s)	359
Psp6I	CCWGG	1 cut(s)	215
PspGI	CCWGG	1 cut(s)	215
PspN4I	GGNNCC	1 cut(s)	214
PspPI	GGNCC	2 cut(s)	49, 212
PspXI	VCTCGAGB	1 cut(s)	77
PsuI	RGATCY	1 cut(s)	316
PsyI	GACNNNGTC	1 cut(s)	53
RsaI	GTAC	3 cut(s)	192, 236, 294
RsaNI	GTAC	3 cut(s)	191, 235, 293
SaqAI	TTAA	1 cut(s)	158
Sau3AI	GATC	4 cut(s)	36, 96, 256, 316
Sau96I	GGNCC	2 cut(s)	49, 212
ScrFI	CCNGG	1 cut(s)	217
SduI	GDGCHC	1 cut(s)	203
SetI	ASST	5 cut(s)	126, 210, 236, 255, 332
SfaNI	GCATC	1 cut(s)	230
Sfr274I	CTCGAG	1 cut(s)	77
SinI	GGWCC	2 cut(s)	49, 212
SlaI	CTCGAG	1 cut(s)	77
SmlI	CTYRAG	1 cut(s)	77
SmoI	CTYRAG	1 cut(s)	77
Sse9I	AATT	3 cut(s)	146, 369, 396
SsiI	CCGC	2 cut(s)	52, 110
SspI	AATATT	1 cut(s)	382
StyD4I	CCNGG	1 cut(s)	215
StyI	CCWWGG	2 cut(s)	204, 330
TaaI	ACNGT	2 cut(s)	340, 358
TaqI	TCGA	2 cut(s)	6, 78
TasI	AATT	3 cut(s)	146, 369, 396
TatI	WGTACW	1 cut(s)	292
TfiI	GAWTC	1 cut(s)	130
Tru1I	TTAA	1 cut(s)	158
Tru9I	TTAA	1 cut(s)	158
TscAI	CASTG	2 cut(s)	27, 99
TspRI	CASTG	2 cut(s)	27, 99
Tth111I	GACNNNGTC	1 cut(s)	53
VpaK11BI	GGWCC	2 cut(s)	49, 212
XceI	RCATGY	2 cut(s)	293, 394
XhoI	CTCGAG	1 cut(s)	77
XmnI	GAANNNNTTC	1 cut(s)	382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.