Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000780

Physical Location & Seq

Genomic Coordinates Forward (+)

23705078 .. 23705939

Gene Structure 862 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g32830.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGATCGACGACTTTATAGAACTGACAGATAAGATGATCATGTTCAAGGTCCAAGTGAGAGATGTGAAACTGACGCTAGAATGTTTGAAGCCAGTGATCCAAGAGATATCAGAGTACAACAAGGTGTTGAAGAATCAGCCATTAGAGGAGGAGCTAGAACTGCAGGACTTGAAATTGCAAATAGAAGAGGGTGCAAATCTCGTTCGAAAGTGTTCCAAGGTTGGTGCCTGGAGTTTGTGCAAGAAGTACAAGTACAGCAACCAACTCTCTCAACTGGATCAATCACTTCAGACACTGTTGCATTTGCTCGAAGTTCAGAAAACAAGGGATCTCAGGGAGACCTTGGTTATTGTCAACAAGATAGAGACCGTCGTCCAGCGAATTGAAGGAAATGTTTCTCCCATGCAGATTAATCAATCAGCAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

143

Amino Acids

16.52

Weight (kDa)

5.53

Isoelectric Point (pI)

51.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	6 - 124	2.1e-20	Arabidopsis broad-spectrum mildew resistance protein RPW8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000780)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g32810 FvH4_5g32810 FvH4_5g32820 FvH4_5g32830
malus_domestica	MD02G1165800.v1.1 MD15G1022900.v1.1 MD15G1277300.v1.1
prunus_persica	Prupe.5G127600_v2.0.a1
pyrus_communis	pycom02g13140 pycom15g24060 pycom15g24100 pycom15g24130
rosa_chinensis	RchiOBHm_Chr2g0143661 RchiOBHm_Chr7g0230541 RchiOBHm_Chr7g0230551 RchiOBHm_Chr7g0230651 RchiOBHm_Chr7g0230701
rosa_laevigata	RLG00000001482 RLG00000001487 RLG00000002333 RLG00000020057
rosa_multiflora	Rmu_sc0002222.1_g000006 Rmu_sc0002799.1_g000008 Rmu_sc0002799.1_g000010 Rmu_sc0002799.1_g000011 Rmu_sc0002799.1_g000013 Rmu_sc0007883.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101570 Rroxscaffold_3G00229820 Rroxscaffold_3G00229840 Rroxscaffold_3G00229950 Rroxscaffold_3G00230000 Rroxscaffold_3G00230010 Rroxscaffold_3G00230020 Rroxscaffold_3G00230030
rosa_rugosa	Rorug02G0384500 Rorug07G0261400 Rorug07G0261500 Rorug07G0261600 Rorug07G0261700 Rorug07G0261900
rosa_samantha	Rh2AG169200 Rh2AG436600 Rh2BG444200 Rh2CG422900 Rh2DG177700 Rh2DG454500 Rh5BG005200 Rh7AG321600 Rh7AG410000 Rh7AG410100 Rh7AG412600 Rh7AG412700 Rh7AG412800 Rh7AG413700 Rh7AG413800 Rh7CG338100 Rh7CG430500 Rh7CG430600 Rh7CG430800 Rh7CG432500 Rh7CG432600 Rh7DG319700 Rh7DG408100 Rh7DG408200 Rh7DG408300 Rh7DG408400 Rh7DG408500 Rh7DG409300
rosa_wichuraiana	Rw7G034330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	224
AclWI	GGATC	3 cut(s)	91, 285, 336
AcuI	CTGAAG	1 cut(s)	272
AfaI	GTAC	3 cut(s)	116, 248, 254
AgsI	TTSAA	5 cut(s)	46, 88, 130, 172, 386
AjnI	CCWGG	1 cut(s)	227
AluBI	AGCT	1 cut(s)	154
AluI	AGCT	1 cut(s)	154
Alw26I	GTCTC	2 cut(s)	332, 359
AlwI	GGATC	3 cut(s)	91, 285, 336
AlwNI	CAGNNNCTG	1 cut(s)	295
AseI	ATTAAT	1 cut(s)	411
Asp700I	GAANNNNTTC	2 cut(s)	211, 394
AspS9I	GGNCC	1 cut(s)	49
AsuII	TTCGAA	1 cut(s)	205
AvaII	GGWCC	1 cut(s)	49
BanI	GGYRCC	1 cut(s)	224
BarI	GAAGNNNNNNTAC	2 cut(s)	236, 268
BciT130I	CCWGG	1 cut(s)	229
BclI	TGATCA	1 cut(s)	36
BcoDI	GTCTC	2 cut(s)	332, 359
BfaI	CTAG	2 cut(s)	77, 155
BfmI	CTRYAG	1 cut(s)	161
Bme1390I	CCNGG	1 cut(s)	229
Bme18I	GGWCC	1 cut(s)	49
BmgT120I	GGNCC	1 cut(s)	49
BmiI	GGNNCC	1 cut(s)	226
BmrFI	CCNGG	1 cut(s)	229
BoxI	GACNNNNGTC	1 cut(s)	371
BpmI	CTGGAG	1 cut(s)	250
Bpu14I	TTCGAA	1 cut(s)	205
BsaI	GGTCTC	2 cut(s)	332, 359
BsaJI	CCNNGG	2 cut(s)	216, 342
Bse1I	ACTGG	2 cut(s)	92, 279
Bse3DI	GCAATG	1 cut(s)	429
BseBI	CCWGG	1 cut(s)	229
BseDI	CCNNGG	2 cut(s)	216, 342
BseMI	GCAATG	1 cut(s)	429
BseMII	CTCAG	1 cut(s)	346
BseNI	ACTGG	2 cut(s)	92, 279
BseRI	GAGGAG	2 cut(s)	161, 164
BshNI	GGYRCC	1 cut(s)	224
BsmAI	GTCTC	2 cut(s)	332, 359
Bso31I	GGTCTC	2 cut(s)	332, 359
Bsp119I	TTCGAA	1 cut(s)	205
Bsp143I	GATC	5 cut(s)	3, 36, 96, 277, 328
BspCNI	CTCAG	1 cut(s)	345
BspLI	GGNNCC	1 cut(s)	226
BspMAI	CTGCAG	1 cut(s)	165
BspPI	GGATC	3 cut(s)	91, 285, 336
BspT104I	TTCGAA	1 cut(s)	205
BspT107I	GGYRCC	1 cut(s)	224
BspTNI	GGTCTC	2 cut(s)	332, 359
BsrDI	GCAATG	1 cut(s)	429
BsrI	ACTGG	2 cut(s)	92, 279
BssECI	CCNNGG	2 cut(s)	216, 342
BssMI	GATC	5 cut(s)	3, 36, 96, 277, 328
BssT1I	CCWWGG	2 cut(s)	216, 342
Bst2UI	CCWGG	1 cut(s)	229
Bst4CI	ACNGT	2 cut(s)	297, 370
Bst6I	CTCTTC	1 cut(s)	180
BstBI	TTCGAA	1 cut(s)	205
BstDEI	CTNAG	1 cut(s)	332
BstKTI	GATC	5 cut(s)	6, 39, 99, 280, 331
BstMAI	GTCTC	2 cut(s)	332, 359
BstMBI	GATC	5 cut(s)	3, 36, 96, 277, 328
BstMWI	GCNNNNNNNGC	1 cut(s)	160
BstNI	CCWGG	1 cut(s)	229
BstPAI	GACNNNNGTC	1 cut(s)	371
BstSCI	CCNGG	1 cut(s)	227
BstSFI	CTRYAG	1 cut(s)	161
BstX2I	RGATCY	1 cut(s)	328
BstYI	RGATCY	1 cut(s)	328
BtsIMutI	CAGTG	2 cut(s)	99, 293
CaiI	CAGNNNCTG	1 cut(s)	295
Cfr13I	GGNCC	1 cut(s)	49
CseI	GACGC	1 cut(s)	82
Csp6I	GTAC	3 cut(s)	115, 247, 253
CviAII	CATG	2 cut(s)	40, 403
CviJI	RGCY	3 cut(s)	91, 139, 154
CviKI_1	RGCY	3 cut(s)	91, 139, 154
CviQI	GTAC	3 cut(s)	115, 247, 253
DdeI	CTNAG	1 cut(s)	332
DpnI	GATC	5 cut(s)	5, 38, 98, 279, 330
DpnII	GATC	5 cut(s)	3, 36, 96, 277, 328
Eam1104I	CTCTTC	1 cut(s)	180
EarI	CTCTTC	1 cut(s)	180
Eco130I	CCWWGG	2 cut(s)	216, 342
Eco31I	GGTCTC	2 cut(s)	332, 359
Eco32I	GATATC	1 cut(s)	108
Eco47I	GGWCC	1 cut(s)	49
Eco57I	CTGAAG	1 cut(s)	272
EcoRII	CCWGG	1 cut(s)	227
EcoRV	GATATC	1 cut(s)	108
EcoT14I	CCWWGG	2 cut(s)	216, 342
ErhI	CCWWGG	2 cut(s)	216, 342
FaeI	CATG	2 cut(s)	43, 406
FaiI	YATR	3 cut(s)	17, 41, 404
FatI	CATG	2 cut(s)	39, 402
FbaI	TGATCA	1 cut(s)	36
FspBI	CTAG	2 cut(s)	77, 155
GsuI	CTGGAG	1 cut(s)	250
HgaI	GACGC	1 cut(s)	82
Hin1II	CATG	2 cut(s)	43, 406
HincII	GTYRAC	1 cut(s)	355
HindII	GTYRAC	1 cut(s)	355
HinfI	GANTC	1 cut(s)	133
Hpy166II	GTNNAC	1 cut(s)	355
Hpy188I	TCNGA	3 cut(s)	112, 291, 318
Hpy8I	GTNNAC	1 cut(s)	355
Hpy99I	CGWCG	2 cut(s)	11, 374
HpyAV	CCTTC	1 cut(s)	380
HpyCH4III	ACNGT	2 cut(s)	297, 370
HpyCH4V	TGCA	6 cut(s)	163, 178, 194, 240, 301, 406
HpyF10VI	GCNNNNNNNGC	1 cut(s)	160
HpyF3I	CTNAG	1 cut(s)	332
Hsp92II	CATG	2 cut(s)	43, 406
Ksp22I	TGATCA	1 cut(s)	36
Kzo9I	GATC	5 cut(s)	3, 36, 96, 277, 328
LmnI	GCTCC	1 cut(s)	151
LpnPI	CCDG	7 cut(s)	105, 149, 214, 241, 260, 319, 389
MaeI	CTAG	2 cut(s)	77, 155
MalI	GATC	5 cut(s)	5, 38, 98, 279, 330
MboI	GATC	5 cut(s)	3, 36, 96, 277, 328
MboII	GAAGA	2 cut(s)	142, 197
MflI	RGATCY	1 cut(s)	328
MluCI	AATT	2 cut(s)	173, 381
MnlI	CCTC	3 cut(s)	139, 142, 181
MroXI	GAANNNNTTC	2 cut(s)	211, 394
MseI	TTAA	1 cut(s)	411
MspR9I	CCNGG	1 cut(s)	229
MvaI	CCWGG	1 cut(s)	229
MwoI	GCNNNNNNNGC	1 cut(s)	160
NdeII	GATC	5 cut(s)	3, 36, 96, 277, 328
NlaIII	CATG	2 cut(s)	43, 406
NlaIV	GGNNCC	1 cut(s)	226
NspV	TTCGAA	1 cut(s)	205
PdmI	GAANNNNTTC	2 cut(s)	211, 394
PfeI	GAWTC	1 cut(s)	133
PshAI	GACNNNNGTC	1 cut(s)	371
PshBI	ATTAAT	1 cut(s)	411
Psp6I	CCWGG	1 cut(s)	227
PspGI	CCWGG	1 cut(s)	227
PspN4I	GGNNCC	1 cut(s)	226
PspPI	GGNCC	1 cut(s)	49
PstI	CTGCAG	1 cut(s)	165
PstNI	CAGNNNCTG	1 cut(s)	295
PsuI	RGATCY	1 cut(s)	328
RsaI	GTAC	3 cut(s)	116, 248, 254
RsaNI	GTAC	3 cut(s)	115, 247, 253
SaqAI	TTAA	1 cut(s)	411
Sau3AI	GATC	5 cut(s)	3, 36, 96, 277, 328
Sau96I	GGNCC	1 cut(s)	49
ScrFI	CCNGG	1 cut(s)	229
SetI	ASST	5 cut(s)	51, 126, 156, 222, 344
SfcI	CTRYAG	1 cut(s)	161
SfuI	TTCGAA	1 cut(s)	205
SinI	GGWCC	1 cut(s)	49
Sse9I	AATT	2 cut(s)	173, 381
SspMI	CTAG	2 cut(s)	77, 155
StyD4I	CCNGG	1 cut(s)	227
StyI	CCWWGG	2 cut(s)	216, 342
TaaI	ACNGT	2 cut(s)	297, 370
TaqI	TCGA	3 cut(s)	6, 205, 309
TasI	AATT	2 cut(s)	173, 381
TatI	WGTACW	3 cut(s)	114, 246, 252
TfiI	GAWTC	1 cut(s)	133
Tru1I	TTAA	1 cut(s)	411
Tru9I	TTAA	1 cut(s)	411
TscAI	CASTG	2 cut(s)	99, 300
TspRI	CASTG	2 cut(s)	99, 300
VpaK11BI	GGWCC	1 cut(s)	49
VspI	ATTAAT	1 cut(s)	411
XmnI	GAANNNNTTC	2 cut(s)	211, 394
XspI	CTAG	2 cut(s)	77, 155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.