Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000780

Physical Location & Seq

Genomic Coordinates Reverse (-)

24640041 .. 24640700

Gene Structure 660 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0261900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGCAGAAAGTGTAGTTGCCTTCTTAGTCAGCAGGCTCAGGACGTTACTCGTAGATGAGGTGAAACTATTATCAGGGATCAAAGCACAGGTGGAGGACATGGTTGAGGAATTAGAGCGCAAACAGGCATTCTTAAGGGTTGTTGATGCAAAGGAAGACAGCAACCCTCAGCTCATAGTGTGGGTTAAACAAGTTAGAGATGTGGCTCATCAGATGGAAGATGCCCTTGATAAATTCAGGATTTCCAATTCACATGATGTCCAGCGTGGACTCCATGCTTTCCTTCAAAAGCTTTCTTGCATCATCATGAAACCGAAAGCTTGCCATCAAATTGCAGCTGATATTCAACTCATACAGTTGAAAGTCCAAACGCTCTCAAAGGGACATAACAGATACCAACTTTATGATCAGGGTCTGCAATGTCAGTTTGGTCAAGTTTATGTCCTTTCACCAGAAGAGGCTGAGCCTGTGGGAATTGGAGAACGCAAAGAGAAGCTGTGGGAATGTTTTCCGACAGCAGGTGGTTCCAGTAGTTGGAATGGGAGGATTAGGAAAACTACCTTGATAAAACAAATATACAAGGATGCCAGAGTTAAGAATCATTTTAAGGTACATGCTTGGATCACTGTTTCTCAATTCCACAAGATAAACCAGCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

NB-ARC RPW8

Protein Analysis

219

Amino Acids

25.15

Weight (kDa)

9.13

Isoelectric Point (pI)

32.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rx_N	PF18052	5 - 84	9.8e-21	Rx N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000780)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g32810 FvH4_5g32810 FvH4_5g32820 FvH4_5g32830
malus_domestica	MD02G1165800.v1.1 MD15G1022900.v1.1 MD15G1277300.v1.1
prunus_persica	Prupe.5G127600_v2.0.a1
pyrus_communis	pycom02g13140 pycom15g24060 pycom15g24100 pycom15g24130
rosa_chinensis	RchiOBHm_Chr2g0143661 RchiOBHm_Chr7g0230541 RchiOBHm_Chr7g0230551 RchiOBHm_Chr7g0230651 RchiOBHm_Chr7g0230701
rosa_laevigata	RLG00000001482 RLG00000001487 RLG00000002333 RLG00000020057
rosa_multiflora	Rmu_sc0002222.1_g000006 Rmu_sc0002799.1_g000008 Rmu_sc0002799.1_g000010 Rmu_sc0002799.1_g000011 Rmu_sc0002799.1_g000013 Rmu_sc0007883.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101570 Rroxscaffold_3G00229820 Rroxscaffold_3G00229840 Rroxscaffold_3G00229950 Rroxscaffold_3G00230000 Rroxscaffold_3G00230010 Rroxscaffold_3G00230020 Rroxscaffold_3G00230030
rosa_rugosa	Rorug02G0384500 Rorug07G0261400 Rorug07G0261500 Rorug07G0261600 Rorug07G0261700 Rorug07G0261900
rosa_samantha	Rh2AG169200 Rh2AG436600 Rh2BG444200 Rh2CG422900 Rh2DG177700 Rh2DG454500 Rh5BG005200 Rh7AG321600 Rh7AG410000 Rh7AG410100 Rh7AG412600 Rh7AG412700 Rh7AG412800 Rh7AG413700 Rh7AG413800 Rh7CG338100 Rh7CG430500 Rh7CG430600 Rh7CG430800 Rh7CG432500 Rh7CG432600 Rh7DG319700 Rh7DG408100 Rh7DG408200 Rh7DG408300 Rh7DG408400 Rh7DG408500 Rh7DG409300
rosa_wichuraiana	Rw7G034330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	509
Acc36I	ACCTGC	1 cut(s)	509
AccB7I	CCANNNNNTGG	1 cut(s)	534
AclWI	GGATC	2 cut(s)	86, 629
AcsI	RAATTY	1 cut(s)	233
AfaI	GTAC	1 cut(s)	612
AfiI	CCNNNNNNNGG	2 cut(s)	518, 534
AflII	CTTAAG	1 cut(s)	133
AgsI	TTSAA	3 cut(s)	287, 347, 361
AluBI	AGCT	6 cut(s)	172, 292, 320, 338, 496, 655
AluI	AGCT	6 cut(s)	172, 292, 320, 338, 496, 655
AlwI	GGATC	2 cut(s)	86, 629
AlwNI	CAGNNNCTG	1 cut(s)	415
ApeKI	GCWGC	1 cut(s)	335
ApoI	RAATTY	1 cut(s)	233
Asp700I	GAANNNNTTC	1 cut(s)	507
AspLEI	GCGC	1 cut(s)	120
AsuHPI	GGTGA	2 cut(s)	73, 441
BbsI	GAAGAC	1 cut(s)	162
BbvCI	CCTCAGC	1 cut(s)	168
BbvI	GCAGC	1 cut(s)	347
BccI	CCATC	2 cut(s)	208, 333
BclI	TGATCA	1 cut(s)	406
BfrI	CTTAAG	1 cut(s)	133
BfuAI	ACCTGC	1 cut(s)	509
BisI	GCNGC	1 cut(s)	336
BlpI	GCTNAGC	1 cut(s)	462
BlsI	GCNGC	1 cut(s)	337
BmiI	GGNNCC	1 cut(s)	526
BmsI	GCATC	4 cut(s)	136, 211, 309, 574
BpiI	GAAGAC	1 cut(s)	162
Bpu10I	CCTNAGC	2 cut(s)	38, 168
Bpu1102I	GCTNAGC	1 cut(s)	462
Bsc4I	CCNNNNNNNGG	2 cut(s)	518, 534
Bse1I	ACTGG	1 cut(s)	528
Bse3DI	GCAATG	1 cut(s)	425
BseGI	GGATG	1 cut(s)	589
BseLI	CCNNNNNNNGG	2 cut(s)	518, 534
BseMI	GCAATG	1 cut(s)	425
BseMII	CTCAG	3 cut(s)	52, 182, 453
BseNI	ACTGG	1 cut(s)	528
BseXI	GCAGC	1 cut(s)	347
BslFI	GGGAC	1 cut(s)	396
BslI	CCNNNNNNNGG	2 cut(s)	518, 534
BsmFI	GGGAC	1 cut(s)	396
BsmI	GAATGC	1 cut(s)	128
Bsp143I	GATC	3 cut(s)	78, 406, 621
Bsp1720I	GCTNAGC	1 cut(s)	462
BspCNI	CTCAG	3 cut(s)	51, 181, 454
BspHI	TCATGA	1 cut(s)	306
BspLI	GGNNCC	1 cut(s)	526
BspMI	ACCTGC	1 cut(s)	509
BspPI	GGATC	2 cut(s)	86, 629
BspTI	CTTAAG	1 cut(s)	133
BsrDI	GCAATG	1 cut(s)	425
BsrI	ACTGG	1 cut(s)	528
BssMI	GATC	3 cut(s)	78, 406, 621
Bst4CI	ACNGT	2 cut(s)	357, 628
Bst6I	CTCTTC	1 cut(s)	450
BstAFI	CTTAAG	1 cut(s)	133
BstC8I	GCNNGC	2 cut(s)	35, 322
BstDEI	CTNAG	4 cut(s)	25, 38, 168, 462
BstF5I	GGATG	1 cut(s)	589
BstHHI	GCGC	1 cut(s)	120
BstKTI	GATC	3 cut(s)	81, 409, 624
BstMBI	GATC	3 cut(s)	78, 406, 621
BstNSI	RCATGY	1 cut(s)	617
BstV1I	GCAGC	1 cut(s)	347
BstV2I	GAAGAC	1 cut(s)	162
BtsCI	GGATG	1 cut(s)	589
BtsIMutI	CAGTG	1 cut(s)	624
BveI	ACCTGC	1 cut(s)	509
Cac8I	GCNNGC	2 cut(s)	35, 322
CaiI	CAGNNNCTG	1 cut(s)	415
CciI	TCATGA	1 cut(s)	306
CfoI	GCGC	1 cut(s)	120
Csp6I	GTAC	1 cut(s)	611
CviAII	CATG	5 cut(s)	100, 254, 275, 307, 614
CviQI	GTAC	1 cut(s)	611
DdeI	CTNAG	4 cut(s)	25, 38, 168, 462
DpnI	GATC	3 cut(s)	80, 408, 623
DpnII	GATC	3 cut(s)	78, 406, 621
Eam1104I	CTCTTC	1 cut(s)	450
EarI	CTCTTC	1 cut(s)	450
FaeI	CATG	5 cut(s)	103, 257, 278, 310, 617
FalI	AAGNNNNNCTT	2 cut(s)	210, 242
FaqI	GGGAC	1 cut(s)	396
FatI	CATG	5 cut(s)	99, 253, 274, 306, 613
FbaI	TGATCA	1 cut(s)	406
Fnu4HI	GCNGC	1 cut(s)	336
FokI	GGATG	1 cut(s)	596
Fsp4HI	GCNGC	1 cut(s)	336
GlaI	GCGC	1 cut(s)	119
GluI	GCNGC	1 cut(s)	336
HhaI	GCGC	1 cut(s)	120
Hin1II	CATG	5 cut(s)	103, 257, 278, 310, 617
Hin6I	GCGC	1 cut(s)	118
HinP1I	GCGC	1 cut(s)	118
HindIII	AAGCTT	2 cut(s)	290, 318
HinfI	GANTC	2 cut(s)	270, 598
HphI	GGTGA	2 cut(s)	73, 441
Hpy166II	GTNNAC	1 cut(s)	269
Hpy188I	TCNGA	2 cut(s)	213, 513
Hpy188III	TCNNGA	3 cut(s)	40, 238, 307
Hpy8I	GTNNAC	1 cut(s)	269
HpyAV	CCTTC	2 cut(s)	31, 293
HpyCH4III	ACNGT	2 cut(s)	357, 628
HpyCH4IV	ACGT	1 cut(s)	44
HpyCH4V	TGCA	4 cut(s)	149, 300, 335, 418
HpyF3I	CTNAG	4 cut(s)	25, 38, 168, 462
HpySE526I	ACGT	1 cut(s)	44
Hsp92II	CATG	5 cut(s)	103, 257, 278, 310, 617
HspAI	GCGC	1 cut(s)	118
Ksp22I	TGATCA	1 cut(s)	406
Kzo9I	GATC	3 cut(s)	78, 406, 621
Lsp1109I	GCAGC	1 cut(s)	347
LweI	GCATC	4 cut(s)	136, 211, 309, 574
MaeII	ACGT	1 cut(s)	44
MaeIII	GTNAC	1 cut(s)	45
MalI	GATC	3 cut(s)	80, 408, 623
MboI	GATC	3 cut(s)	78, 406, 621
MboII	GAAGA	3 cut(s)	167, 230, 467
MluCI	AATT	6 cut(s)	110, 233, 247, 330, 474, 635
MlyI	GAGTC	1 cut(s)	264
MmeI	TCCRAC	2 cut(s)	515, 536
MnlI	CCTC	6 cut(s)	52, 88, 100, 177, 451, 537
MroXI	GAANNNNTTC	1 cut(s)	507
MseI	TTAA	4 cut(s)	134, 186, 594, 606
MslI	CAYNNNNRTG	1 cut(s)	305
MspA1I	CMGCKG	1 cut(s)	338
MspCI	CTTAAG	1 cut(s)	133
Mva1269I	GAATGC	1 cut(s)	128
NdeII	GATC	3 cut(s)	78, 406, 621
NlaIII	CATG	5 cut(s)	103, 257, 278, 310, 617
NlaIV	GGNNCC	1 cut(s)	526
NspI	RCATGY	1 cut(s)	617
PagI	TCATGA	1 cut(s)	306
PaqCI	CACCTGC	1 cut(s)	509
PctI	GAATGC	1 cut(s)	128
PdmI	GAANNNNTTC	1 cut(s)	507
PfeI	GAWTC	1 cut(s)	598
PflMI	CCANNNNNTGG	1 cut(s)	534
PkrI	GCNGC	1 cut(s)	337
PleI	GAGTC	1 cut(s)	264
PpsI	GAGTC	1 cut(s)	264
PspN4I	GGNNCC	1 cut(s)	526
PstNI	CAGNNNCTG	1 cut(s)	415
PvuII	CAGCTG	1 cut(s)	338
RsaI	GTAC	1 cut(s)	612
RsaNI	GTAC	1 cut(s)	611
RseI	CAYNNNNRTG	1 cut(s)	305
SaqAI	TTAA	4 cut(s)	134, 186, 594, 606
SatI	GCNGC	1 cut(s)	336
Sau3AI	GATC	3 cut(s)	78, 406, 621
SchI	GAGTC	1 cut(s)	264
SfaNI	GCATC	4 cut(s)	136, 211, 309, 574
SmiMI	CAYNNNNRTG	1 cut(s)	305
SmlI	CTYRAG	1 cut(s)	133
SmoI	CTYRAG	1 cut(s)	133
Sse9I	AATT	6 cut(s)	110, 233, 247, 330, 474, 635
TaaI	ACNGT	2 cut(s)	357, 628
TaiI	ACGT	1 cut(s)	47
TasI	AATT	6 cut(s)	110, 233, 247, 330, 474, 635
TfiI	GAWTC	1 cut(s)	598
Tru1I	TTAA	4 cut(s)	134, 186, 594, 606
Tru9I	TTAA	4 cut(s)	134, 186, 594, 606
TscAI	CASTG	1 cut(s)	631
TseI	GCWGC	1 cut(s)	335
TspDTI	ATGAA	1 cut(s)	323
TspRI	CASTG	1 cut(s)	631
Van91I	CCANNNNNTGG	1 cut(s)	534
Vha464I	CTTAAG	1 cut(s)	133
XapI	RAATTY	1 cut(s)	233
XceI	RCATGY	1 cut(s)	617
XmnI	GAANNNNTTC	1 cut(s)	507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.