Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000780

Physical Location & Seq

Genomic Coordinates Forward (+)

24624509 .. 24624991

Gene Structure 483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0261400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGTCGTCTGATGAAGAAGAGCCATGGGAAGTAGAGGAAGTGAATAATGATGAAGATCCAGAAGAAGTGAGTTCATTGACGGGTCCAGAAACTGGATCTACAGCTAGTGGTCCCTCGGTTAATTTTCAGGCACCTTCAGATTGGCCACCTTGGGGACAAGTGCAGCCTCCAGCAGAGCCTTTTGCAGCCGACTTACTGCAGGAGGACTGGACTGTGGGTCAGTATACCTGTTTATTCACTCGCGGCCTTCAGGAGAAGAGGAAGGCTGGTCGTACGAGATCAAGACAAGCGGTCACAAGGAGTTACATTCTTGGTTTCAACTCCAAGATTCGGGAACATATGCTTCACTATTATAATGATGATCGTCAGTATACTTCACTATCAGATATAGCTGAAGCGGTCGAAAGGGTGATAGGTATCGTTGACACAATTGAACATTACAAAGCTCATCGCCTACTGATTCCCGACGCGTTTAAGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

160

Amino Acids

18.2

Weight (kDa)

4.62

Isoelectric Point (pI)

53.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000780)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g32810 FvH4_5g32810 FvH4_5g32820 FvH4_5g32830
malus_domestica	MD02G1165800.v1.1 MD15G1022900.v1.1 MD15G1277300.v1.1
prunus_persica	Prupe.5G127600_v2.0.a1
pyrus_communis	pycom02g13140 pycom15g24060 pycom15g24100 pycom15g24130
rosa_chinensis	RchiOBHm_Chr2g0143661 RchiOBHm_Chr7g0230541 RchiOBHm_Chr7g0230551 RchiOBHm_Chr7g0230651 RchiOBHm_Chr7g0230701
rosa_laevigata	RLG00000001482 RLG00000001487 RLG00000002333 RLG00000020057
rosa_multiflora	Rmu_sc0002222.1_g000006 Rmu_sc0002799.1_g000008 Rmu_sc0002799.1_g000010 Rmu_sc0002799.1_g000011 Rmu_sc0002799.1_g000013 Rmu_sc0007883.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101570 Rroxscaffold_3G00229820 Rroxscaffold_3G00229840 Rroxscaffold_3G00229950 Rroxscaffold_3G00230000 Rroxscaffold_3G00230010 Rroxscaffold_3G00230020 Rroxscaffold_3G00230030
rosa_rugosa	Rorug02G0384500 Rorug07G0261400 Rorug07G0261500 Rorug07G0261600 Rorug07G0261700 Rorug07G0261900
rosa_samantha	Rh2AG169200 Rh2AG436600 Rh2BG444200 Rh2CG422900 Rh2DG177700 Rh2DG454500 Rh5BG005200 Rh7AG321600 Rh7AG410000 Rh7AG410100 Rh7AG412600 Rh7AG412700 Rh7AG412800 Rh7AG413700 Rh7AG413800 Rh7CG338100 Rh7CG430500 Rh7CG430600 Rh7CG430800 Rh7CG432500 Rh7CG432600 Rh7DG319700 Rh7DG408100 Rh7DG408200 Rh7DG408300 Rh7DG408400 Rh7DG408500 Rh7DG409300
rosa_wichuraiana	Rw7G034330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	354
AccB1I	GGYRCC	1 cut(s)	130
AccB7I	CCANNNNNTGG	1 cut(s)	92
AccI	GTMKAC	2 cut(s)	224, 371
AccII	CGCG	2 cut(s)	243, 470
AciI	CCGC	3 cut(s)	243, 290, 398
AclWI	GGATC	2 cut(s)	50, 103
AcoI	YGGCCR	1 cut(s)	143
AcuI	CTGAAG	3 cut(s)	120, 233, 414
AfaI	GTAC	1 cut(s)	274
AfiI	CCNNNNNNNGG	3 cut(s)	92, 152, 330
AflIII	ACRYGT	1 cut(s)	468
AgsI	TTSAA	2 cut(s)	319, 434
AhdI	GACNNNNNGTC	2 cut(s)	216, 290
AluBI	AGCT	3 cut(s)	104, 392, 446
AluI	AGCT	3 cut(s)	104, 392, 446
AlwI	GGATC	2 cut(s)	50, 103
AlwNI	CAGNNNCTG	1 cut(s)	92
AoxI	GGCC	2 cut(s)	143, 244
ApeKI	GCWGC	2 cut(s)	163, 185
AspS9I	GGNCC	2 cut(s)	83, 110
AsuHPI	GGTGA	1 cut(s)	421
AvaII	GGWCC	2 cut(s)	83, 110
BalI	TGGCCA	1 cut(s)	145
BanI	GGYRCC	1 cut(s)	130
BbvI	GCAGC	2 cut(s)	175, 197
BfaI	CTAG	1 cut(s)	105
BfmI	CTRYAG	2 cut(s)	99, 197
BisI	GCNGC	3 cut(s)	164, 186, 244
BlsI	GCNGC	3 cut(s)	165, 187, 245
Bme18I	GGWCC	2 cut(s)	83, 110
BmeRI	GACNNNNNGTC	2 cut(s)	216, 290
BmgT120I	GGNCC	2 cut(s)	83, 110
BmiI	GGNNCC	3 cut(s)	84, 112, 132
BpmI	CTGGAG	1 cut(s)	153
BsaBI	GATNNNNATC	2 cut(s)	54, 416
BsaJI	CCNNGG	3 cut(s)	23, 114, 149
Bsc4I	CCNNNNNNNGG	3 cut(s)	92, 152, 330
Bse1I	ACTGG	2 cut(s)	97, 212
Bse8I	GATNNNNATC	2 cut(s)	54, 416
BseDI	CCNNGG	3 cut(s)	23, 114, 149
BseJI	GATNNNNATC	2 cut(s)	54, 416
BseLI	CCNNNNNNNGG	3 cut(s)	92, 152, 330
BseNI	ACTGG	2 cut(s)	97, 212
BseXI	GCAGC	2 cut(s)	175, 197
BsgI	GTGCAG	1 cut(s)	182
Bsh1236I	CGCG	2 cut(s)	243, 470
Bsh1285I	CGRYCG	1 cut(s)	402
BshFI	GGCC	2 cut(s)	145, 246
BshNI	GGYRCC	1 cut(s)	130
BsiEI	CGRYCG	1 cut(s)	402
BsiWI	CGTACG	1 cut(s)	272
BslFI	GGGAC	2 cut(s)	96, 168
BslI	CCNNNNNNNGG	3 cut(s)	92, 152, 330
BsmFI	GGGAC	2 cut(s)	96, 168
BsnI	GGCC	2 cut(s)	145, 246
Bsp143I	GATC	4 cut(s)	55, 95, 278, 361
Bsp19I	CCATGG	1 cut(s)	23
BspACI	CCGC	3 cut(s)	243, 290, 398
BspANI	GGCC	2 cut(s)	145, 246
BspFNI	CGCG	2 cut(s)	243, 470
BspLI	GGNNCC	3 cut(s)	84, 112, 132
BspMAI	CTGCAG	1 cut(s)	201
BspPI	GGATC	2 cut(s)	50, 103
BspQI	GCTCTTC	1 cut(s)	12
BspT107I	GGYRCC	1 cut(s)	130
BsrI	ACTGG	2 cut(s)	97, 212
BssECI	CCNNGG	3 cut(s)	23, 114, 149
BssMI	GATC	4 cut(s)	55, 95, 278, 361
BssNAI	GTATAC	2 cut(s)	225, 372
BssT1I	CCWWGG	2 cut(s)	23, 149
Bst1107I	GTATAC	2 cut(s)	225, 372
Bst4CI	ACNGT	1 cut(s)	214
Bst6I	CTCTTC	2 cut(s)	12, 251
BstDSI	CCRYGG	1 cut(s)	23
BstFNI	CGCG	2 cut(s)	243, 470
BstKTI	GATC	4 cut(s)	58, 98, 281, 364
BstMBI	GATC	4 cut(s)	55, 95, 278, 361
BstMCI	CGRYCG	1 cut(s)	402
BstSFI	CTRYAG	2 cut(s)	99, 197
BstUI	CGCG	2 cut(s)	243, 470
BstV1I	GCAGC	2 cut(s)	175, 197
BstX2I	RGATCY	2 cut(s)	55, 95
BstYI	RGATCY	2 cut(s)	55, 95
BstZ17I	GTATAC	2 cut(s)	225, 372
BsuRI	GGCC	2 cut(s)	145, 246
BtgI	CCRYGG	1 cut(s)	23
BtgZI	GCGATG	1 cut(s)	434
CaiI	CAGNNNCTG	1 cut(s)	92
Cfr13I	GGNCC	2 cut(s)	83, 110
CseI	GACGC	1 cut(s)	476
Csp6I	GTAC	1 cut(s)	273
CviAII	CATG	1 cut(s)	24
CviQI	GTAC	1 cut(s)	273
DpnI	GATC	4 cut(s)	57, 97, 280, 363
DpnII	GATC	4 cut(s)	55, 95, 278, 361
DriI	GACNNNNNGTC	2 cut(s)	216, 290
EaeI	YGGCCR	1 cut(s)	143
Eam1104I	CTCTTC	2 cut(s)	12, 251
Eam1105I	GACNNNNNGTC	2 cut(s)	216, 290
EarI	CTCTTC	2 cut(s)	12, 251
Eco130I	CCWWGG	2 cut(s)	23, 149
Eco47I	GGWCC	2 cut(s)	83, 110
Eco57I	CTGAAG	3 cut(s)	120, 233, 414
EcoT14I	CCWWGG	2 cut(s)	23, 149
ErhI	CCWWGG	2 cut(s)	23, 149
FaeI	CATG	1 cut(s)	27
FaiI	YATR	7 cut(s)	25, 225, 339, 341, 354, 372, 389
FaqI	GGGAC	2 cut(s)	96, 168
FatI	CATG	1 cut(s)	23
FauNDI	CATATG	1 cut(s)	339
FblI	GTMKAC	2 cut(s)	224, 371
Fnu4HI	GCNGC	3 cut(s)	164, 186, 244
Fsp4HI	GCNGC	3 cut(s)	164, 186, 244
FspBI	CTAG	1 cut(s)	105
GluI	GCNGC	3 cut(s)	164, 186, 244
GsuI	CTGGAG	1 cut(s)	153
HaeIII	GGCC	2 cut(s)	145, 246
HgaI	GACGC	1 cut(s)	476
Hin1II	CATG	1 cut(s)	27
HincII	GTYRAC	1 cut(s)	424
HindII	GTYRAC	1 cut(s)	424
HinfI	GANTC	2 cut(s)	328, 460
HphI	GGTGA	1 cut(s)	421
Hpy166II	GTNNAC	3 cut(s)	225, 372, 424
Hpy188I	TCNGA	3 cut(s)	10, 139, 385
Hpy188III	TCNNGA	6 cut(s)	59, 86, 251, 282, 332, 464
Hpy8I	GTNNAC	3 cut(s)	225, 372, 424
Hpy99I	CGWCG	1 cut(s)	470
HpyAV	CCTTC	3 cut(s)	144, 256, 257
HpyCH4III	ACNGT	1 cut(s)	214
HpyCH4V	TGCA	3 cut(s)	163, 185, 199
Hsp92II	CATG	1 cut(s)	27
Kzo9I	GATC	4 cut(s)	55, 95, 278, 361
LguI	GCTCTTC	1 cut(s)	12
Lsp1109I	GCAGC	2 cut(s)	175, 197
MaeI	CTAG	1 cut(s)	105
MaeIII	GTNAC	2 cut(s)	292, 302
MalI	GATC	4 cut(s)	57, 97, 280, 363
MboI	GATC	4 cut(s)	55, 95, 278, 361
MboII	GAAGA	5 cut(s)	26, 29, 65, 74, 268
MfeI	CAATTG	1 cut(s)	429
MflI	RGATCY	2 cut(s)	55, 95
MlsI	TGGCCA	1 cut(s)	145
MluCI	AATT	2 cut(s)	121, 429
MluI	ACGCGT	1 cut(s)	468
MluNI	TGGCCA	1 cut(s)	145
MnlI	CCTC	5 cut(s)	28, 124, 177, 196, 252
Mox20I	TGGCCA	1 cut(s)	145
MscI	TGGCCA	1 cut(s)	145
MseI	TTAA	2 cut(s)	120, 474
Msp20I	TGGCCA	1 cut(s)	145
MunI	CAATTG	1 cut(s)	429
MvnI	CGCG	2 cut(s)	243, 470
NcoI	CCATGG	1 cut(s)	23
NdeI	CATATG	1 cut(s)	339
NdeII	GATC	4 cut(s)	55, 95, 278, 361
NlaIII	CATG	1 cut(s)	27
NlaIV	GGNNCC	3 cut(s)	84, 112, 132
NmuCI	GTSAC	1 cut(s)	292
PciSI	GCTCTTC	1 cut(s)	12
PfeI	GAWTC	2 cut(s)	328, 460
Pfl23II	CGTACG	1 cut(s)	272
PflMI	CCANNNNNTGG	1 cut(s)	92
PkrI	GCNGC	3 cut(s)	165, 187, 245
PsiI	TTATAA	1 cut(s)	354
PspLI	CGTACG	1 cut(s)	272
PspN4I	GGNNCC	3 cut(s)	84, 112, 132
PspPI	GGNCC	2 cut(s)	83, 110
PstI	CTGCAG	1 cut(s)	201
PstNI	CAGNNNCTG	1 cut(s)	92
PsuI	RGATCY	2 cut(s)	55, 95
RsaI	GTAC	1 cut(s)	274
RsaNI	GTAC	1 cut(s)	273
SapI	GCTCTTC	1 cut(s)	12
SaqAI	TTAA	2 cut(s)	120, 474
SatI	GCNGC	3 cut(s)	164, 186, 244
Sau3AI	GATC	4 cut(s)	55, 95, 278, 361
Sau96I	GGNCC	2 cut(s)	83, 110
SetI	ASST	7 cut(s)	106, 136, 151, 230, 394, 418, 448
SfcI	CTRYAG	2 cut(s)	99, 197
SinI	GGWCC	2 cut(s)	83, 110
Sse9I	AATT	2 cut(s)	121, 429
SsiI	CCGC	3 cut(s)	243, 290, 398
SspMI	CTAG	1 cut(s)	105
StyI	CCWWGG	2 cut(s)	23, 149
TaaI	ACNGT	1 cut(s)	214
TaqI	TCGA	1 cut(s)	402
TasI	AATT	2 cut(s)	121, 429
TauI	GCSGC	1 cut(s)	246
TfiI	GAWTC	2 cut(s)	328, 460
Tru1I	TTAA	2 cut(s)	120, 474
Tru9I	TTAA	2 cut(s)	120, 474
TseFI	GTSAC	1 cut(s)	292
TseI	GCWGC	2 cut(s)	163, 185
Tsp45I	GTSAC	1 cut(s)	292
TspDTI	ATGAA	3 cut(s)	27, 63, 66
Van91I	CCANNNNNTGG	1 cut(s)	92
VpaK11BI	GGWCC	2 cut(s)	83, 110
XmiI	GTMKAC	2 cut(s)	224, 371
XspI	CTAG	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.