pycom02g13140

sensory perception of sound

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
Physical Location & Seq
Forward (+)
9704304 .. 9704924
621 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g13140.1

Sequence Viewer

Length: 621 bp
ATGCAAGTAGAAAAAATTGAGAAAAAAATGGAGGATGGGAAAGTGTTAGTTCTCGAGTGCTCCAAGCCTAGCCGGTGGAAAGGCTTCAAAAAGTATAAATACGCCAAGAAACTTCTCAATTTGGACAATTGTCTAAACAGGTTGTTGACGGTACTGATTGTGGAGGGAATAAGGAATGGGTTGGAGACCTTGGCTGTTTCGAGGGAGAACTTGGCTCTTTTAAGGGAGATAGCTGGTGTTGTGAGGGAGAAATTGGCTGTTTCAAGGGAGACATTTGGTGTTGCGAGGGAGAACTTGGCTGTTTCAAGGGAGACATTTGGTGTTGCGACGGAGAACTTGGCTGTTTCAGGGGAGACGTTTGGTGCTGCGATGGAGAACTTGACTGTTTCAAGGGAGACATTTGGTGTTGCAACGGAGAACTTGGCTGTTTCAGGGGAGACATTTGGTGTTGCGACGGAGAACTTGGCTGTTTCAAGGGAGACATCTGGTGTTTCGACGGAGAACTTGGCTGTTTCAAGGGAGACATCTAGTGTTTCGATCAAGACCTTGGCTGTGTCGGAGGATCGATCTTGGCTGCTGTCCACCCAATTGGTTCGGTTGGAAGCAAAGAGAATGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

207

Amino Acids

22.63

Weight (kDa)

8.53

Isoelectric Point (pI)

37.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RPW8 PF05659 3 - 69 8.6e-09 Arabidopsis broad-spectrum mildew resistance protein RPW8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 570
AfaI GTAC 1 cut(s) 153
AgsI TTSAA 6 cut(s) 88, 264, 306, 390, 474, 516
AluBI AGCT 1 cut(s) 233
AluI AGCT 1 cut(s) 233
Alw21I GWGCWC 1 cut(s) 62
Alw26I GTCTC 8 cut(s) 179, 263, 305, 347, 389, 431, 473, 515
AlwI GGATC 1 cut(s) 570
Ama87I CYCGRG 1 cut(s) 53
ApeKI GCWGC 2 cut(s) 365, 574
Asp700I GAANNNNTTC 1 cut(s) 83
AvaI CYCGRG 1 cut(s) 53
Bbv12I GWGCWC 1 cut(s) 62
BbvI GCAGC 2 cut(s) 352, 561
BccI CCATC 2 cut(s) 29, 364
BcoDI GTCTC 8 cut(s) 179, 263, 305, 347, 389, 431, 473, 515
BfaI CTAG 2 cut(s) 69, 528
BisI GCNGC 2 cut(s) 366, 575
BlsI GCNGC 2 cut(s) 367, 576
BmeT110I CYCGRG 1 cut(s) 53
BoxI GACNNNNGTC 1 cut(s) 129
Bsa29I ATCGAT 1 cut(s) 565
BsaI GGTCTC 1 cut(s) 179
BsaJI CCNNGG 2 cut(s) 189, 546
Bse118I RCCGGY 1 cut(s) 72
BseCI ATCGAT 1 cut(s) 565
BseDI CCNNGG 2 cut(s) 189, 546
BseGI GGATG 1 cut(s) 40
BseXI GCAGC 2 cut(s) 352, 561
BshVI ATCGAT 1 cut(s) 565
BsiHKAI GWGCWC 1 cut(s) 62
BsiHKCI CYCGRG 1 cut(s) 53
BsiSI CCGG 1 cut(s) 73
BsmAI GTCTC 8 cut(s) 179, 263, 305, 347, 389, 431, 473, 515
BsmBI CGTCTC 1 cut(s) 347
Bso31I GGTCTC 1 cut(s) 179
BsoBI CYCGRG 1 cut(s) 53
Bsp1286I GDGCHC 1 cut(s) 62
Bsp143I GATC 3 cut(s) 537, 562, 566
BspDI ATCGAT 1 cut(s) 565
BspPI GGATC 1 cut(s) 570
BspTNI GGTCTC 1 cut(s) 179
BsrFI RCCGGY 1 cut(s) 72
BssAI RCCGGY 1 cut(s) 72
BssECI CCNNGG 2 cut(s) 189, 546
BssMI GATC 3 cut(s) 537, 562, 566
BssT1I CCWWGG 2 cut(s) 189, 546
Bst4CI ACNGT 2 cut(s) 151, 385
BstF5I GGATG 1 cut(s) 40
BstKTI GATC 3 cut(s) 540, 565, 569
BstMAI GTCTC 8 cut(s) 179, 263, 305, 347, 389, 431, 473, 515
BstMBI GATC 3 cut(s) 537, 562, 566
BstPAI GACNNNNGTC 1 cut(s) 129
BstV1I GCAGC 2 cut(s) 352, 561
BstXI CCANNNNNNTGG 1 cut(s) 589
Bsu15I ATCGAT 1 cut(s) 565
BsuTUI ATCGAT 1 cut(s) 565
BtgZI GCGATG 1 cut(s) 383
BtsCI GGATG 1 cut(s) 40
Cfr10I RCCGGY 1 cut(s) 72
ClaI ATCGAT 1 cut(s) 565
Csp6I GTAC 1 cut(s) 152
CviQI GTAC 1 cut(s) 152
DpnI GATC 3 cut(s) 539, 564, 568
DpnII GATC 3 cut(s) 537, 562, 566
Eco130I CCWWGG 2 cut(s) 189, 546
Eco31I GGTCTC 1 cut(s) 179
Eco88I CYCGRG 1 cut(s) 53
EcoT14I CCWWGG 2 cut(s) 189, 546
ErhI CCWWGG 2 cut(s) 189, 546
Esp3I CGTCTC 1 cut(s) 347
FaiI YATR 1 cut(s) 96
Fnu4HI GCNGC 2 cut(s) 366, 575
FokI GGATG 1 cut(s) 47
Fsp4HI GCNGC 2 cut(s) 366, 575
FspBI CTAG 2 cut(s) 69, 528
GluI GCNGC 2 cut(s) 366, 575
HapII CCGG 1 cut(s) 73
HincII GTYRAC 1 cut(s) 147
HindII GTYRAC 1 cut(s) 147
HpaII CCGG 1 cut(s) 73
Hpy166II GTNNAC 2 cut(s) 147, 582
Hpy188I TCNGA 1 cut(s) 559
Hpy188III TCNNGA 2 cut(s) 53, 541
Hpy8I GTNNAC 2 cut(s) 147, 582
Hpy99I CGWCG 3 cut(s) 331, 457, 499
HpyCH4III ACNGT 2 cut(s) 151, 385
HpyCH4IV ACGT 1 cut(s) 356
HpyCH4V TGCA 2 cut(s) 4, 410
HpySE526I ACGT 1 cut(s) 356
Kzo9I GATC 3 cut(s) 537, 562, 566
LmnI GCTCC 1 cut(s) 65
LpnPI CCDG 6 cut(s) 86, 124, 219, 333, 417, 471
Lsp1109I GCAGC 2 cut(s) 352, 561
MaeI CTAG 2 cut(s) 69, 528
MaeII ACGT 1 cut(s) 356
MalI GATC 3 cut(s) 539, 564, 568
MboI GATC 3 cut(s) 537, 562, 566
MfeI CAATTG 2 cut(s) 127, 587
MhlI GDGCHC 1 cut(s) 62
MluCI AATT 5 cut(s) 15, 118, 127, 251, 587
MmeI TCCRAC 3 cut(s) 162, 537, 579
MnlI CCTC 6 cut(s) 25, 157, 195, 237, 279, 553
MroXI GAANNNNTTC 1 cut(s) 83
MseI TTAA 1 cut(s) 221
MspI CCGG 1 cut(s) 73
MunI CAATTG 2 cut(s) 127, 587
NdeII GATC 3 cut(s) 537, 562, 566
PaeR7I CTCGAG 1 cut(s) 53
PdmI GAANNNNTTC 1 cut(s) 83
PkrI GCNGC 2 cut(s) 367, 576
PshAI GACNNNNGTC 1 cut(s) 129
RsaI GTAC 1 cut(s) 153
RsaNI GTAC 1 cut(s) 152
SaqAI TTAA 1 cut(s) 221
SatI GCNGC 2 cut(s) 366, 575
Sau3AI GATC 3 cut(s) 537, 562, 566
SduI GDGCHC 1 cut(s) 62
SetI ASST 5 cut(s) 143, 191, 235, 359, 548
Sfr274I CTCGAG 1 cut(s) 53
SlaI CTCGAG 1 cut(s) 53
SmlI CTYRAG 1 cut(s) 53
SmoI CTYRAG 1 cut(s) 53
Sse9I AATT 5 cut(s) 15, 118, 127, 251, 587
SspMI CTAG 2 cut(s) 69, 528
StyI CCWWGG 2 cut(s) 189, 546
TaaI ACNGT 2 cut(s) 151, 385
TaiI ACGT 1 cut(s) 359
TaqI TCGA 5 cut(s) 54, 200, 494, 536, 565
TasI AATT 5 cut(s) 15, 118, 127, 251, 587
Tru1I TTAA 1 cut(s) 221
Tru9I TTAA 1 cut(s) 221
TseI GCWGC 2 cut(s) 365, 574
TspGWI ACGGA 4 cut(s) 344, 428, 470, 512
XhoI CTCGAG 1 cut(s) 53
XmnI GAANNNNTTC 1 cut(s) 83
XspI CTAG 2 cut(s) 69, 528
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.