Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000780

Physical Location & Seq

Genomic Coordinates Reverse (-)

14540731 .. 14541433

Gene Structure 703 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00230000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGACTCGCTCGTTGCTGCCCCAGCACATACGTACTGTTGTTCTAGACATGCTAATTGATGGAATTGTAGAATTGATGGAGGAGATGATCATGTTCAAGGTCCATGTGAGAGATGTGAAATCCACGCTCGACTGTTTGAAACCAGTGATCCAGGAGATAACGGAATACAACAAGGTGTTGAAGAATCAACCAATGGAGGAGGAACAAGCACTGCAGCACTTGAAATCGCAAATAGAAGAAGGCGCAATTCTGGTTCAAAAGTGTTCCAAGGTTGGTGCCTGGAGTTTCCGCAAGAAGTACAAGTACAGCAACCAACTCTTTCAACTTGATCAATCGCTTCACACACTCTTGCAGTTGCTCGAACAGCAGAAAGCAAGAGATGTCTGGGAGACCTTGGTTACGGTCAGGAAGATAGAGACCGTCGTCCAGCGAATTGAAGGAAACGTTTGTGCTATGCAAATTAGTCAATCTGCAACTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

160

Amino Acids

18.65

Weight (kDa)

6.9

Isoelectric Point (pI)

48.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	14 - 142	6.4e-19	Arabidopsis broad-spectrum mildew resistance protein RPW8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000780)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g32810 FvH4_5g32810 FvH4_5g32820 FvH4_5g32830
malus_domestica	MD02G1165800.v1.1 MD15G1022900.v1.1 MD15G1277300.v1.1
prunus_persica	Prupe.5G127600_v2.0.a1
pyrus_communis	pycom02g13140 pycom15g24060 pycom15g24100 pycom15g24130
rosa_chinensis	RchiOBHm_Chr2g0143661 RchiOBHm_Chr7g0230541 RchiOBHm_Chr7g0230551 RchiOBHm_Chr7g0230651 RchiOBHm_Chr7g0230701
rosa_laevigata	RLG00000001482 RLG00000001487 RLG00000002333 RLG00000020057
rosa_multiflora	Rmu_sc0002222.1_g000006 Rmu_sc0002799.1_g000008 Rmu_sc0002799.1_g000010 Rmu_sc0002799.1_g000011 Rmu_sc0002799.1_g000013 Rmu_sc0007883.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101570 Rroxscaffold_3G00229820 Rroxscaffold_3G00229840 Rroxscaffold_3G00229950 Rroxscaffold_3G00230000 Rroxscaffold_3G00230010 Rroxscaffold_3G00230020 Rroxscaffold_3G00230030
rosa_rugosa	Rorug02G0384500 Rorug07G0261400 Rorug07G0261500 Rorug07G0261600 Rorug07G0261700 Rorug07G0261900
rosa_samantha	Rh2AG169200 Rh2AG436600 Rh2BG444200 Rh2CG422900 Rh2DG177700 Rh2DG454500 Rh5BG005200 Rh7AG321600 Rh7AG410000 Rh7AG410100 Rh7AG412600 Rh7AG412700 Rh7AG412800 Rh7AG413700 Rh7AG413800 Rh7CG338100 Rh7CG430500 Rh7CG430600 Rh7CG430800 Rh7CG432500 Rh7CG432600 Rh7DG319700 Rh7DG408100 Rh7DG408200 Rh7DG408300 Rh7DG408400 Rh7DG408500 Rh7DG409300
rosa_wichuraiana	Rw7G034330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	275
AciI	CCGC	1 cut(s)	289
AclI	AACGTT	1 cut(s)	444
AclWI	GGATC	1 cut(s)	142
AfaI	GTAC	3 cut(s)	34, 299, 305
AgsI	TTSAA	7 cut(s)	97, 139, 181, 223, 257, 323, 437
AjnI	CCWGG	2 cut(s)	150, 278
Alw26I	GTCTC	2 cut(s)	383, 410
AlwI	GGATC	1 cut(s)	142
ApeKI	GCWGC	2 cut(s)	16, 214
AspLEI	GCGC	1 cut(s)	245
AspS9I	GGNCC	1 cut(s)	100
AvaII	GGWCC	1 cut(s)	100
BanI	GGYRCC	1 cut(s)	275
BarI	GAAGNNNNNNTAC	2 cut(s)	287, 319
BbvI	GCAGC	2 cut(s)	3, 226
BccI	CCATC	2 cut(s)	53, 70
BciT130I	CCWGG	2 cut(s)	152, 280
BclI	TGATCA	2 cut(s)	87, 328
BcoDI	GTCTC	2 cut(s)	383, 410
BfaI	CTAG	2 cut(s)	44, 481
BfmI	CTRYAG	1 cut(s)	212
BisI	GCNGC	2 cut(s)	17, 215
BlsI	GCNGC	2 cut(s)	18, 216
Bme1390I	CCNGG	2 cut(s)	152, 280
Bme18I	GGWCC	1 cut(s)	100
BmgT120I	GGNCC	1 cut(s)	100
BmiI	GGNNCC	1 cut(s)	277
BmrFI	CCNGG	2 cut(s)	152, 280
BoxI	GACNNNNGTC	1 cut(s)	422
BpmI	CTGGAG	1 cut(s)	301
BsaAI	YACGTR	1 cut(s)	32
BsaI	GGTCTC	2 cut(s)	383, 410
BsaJI	CCNNGG	2 cut(s)	267, 393
Bse1I	ACTGG	1 cut(s)	143
BseBI	CCWGG	2 cut(s)	152, 280
BseDI	CCNNGG	2 cut(s)	267, 393
BseNI	ACTGG	1 cut(s)	143
BseRI	GAGGAG	2 cut(s)	95, 212
BseXI	GCAGC	2 cut(s)	3, 226
BseYI	CCCAGC	1 cut(s)	21
BshNI	GGYRCC	1 cut(s)	275
BsmAI	GTCTC	2 cut(s)	383, 410
Bso31I	GGTCTC	2 cut(s)	383, 410
Bsp143I	GATC	3 cut(s)	87, 147, 328
BspACI	CCGC	1 cut(s)	289
BspLI	GGNNCC	1 cut(s)	277
BspMAI	CTGCAG	1 cut(s)	216
BspPI	GGATC	1 cut(s)	142
BspT107I	GGYRCC	1 cut(s)	275
BspTNI	GGTCTC	2 cut(s)	383, 410
BsrI	ACTGG	1 cut(s)	143
BssECI	CCNNGG	2 cut(s)	267, 393
BssMI	GATC	3 cut(s)	87, 147, 328
BssT1I	CCWWGG	2 cut(s)	267, 393
Bst2UI	CCWGG	2 cut(s)	152, 280
Bst4CI	ACNGT	4 cut(s)	37, 134, 403, 421
BstBAI	YACGTR	1 cut(s)	32
BstHHI	GCGC	1 cut(s)	245
BstKTI	GATC	3 cut(s)	90, 150, 331
BstMAI	GTCTC	2 cut(s)	383, 410
BstMBI	GATC	3 cut(s)	87, 147, 328
BstMWI	GCNNNNNNNGC	2 cut(s)	22, 364
BstNI	CCWGG	2 cut(s)	152, 280
BstNSI	RCATGY	1 cut(s)	52
BstPAI	GACNNNNGTC	1 cut(s)	422
BstSCI	CCNGG	2 cut(s)	150, 278
BstSFI	CTRYAG	1 cut(s)	212
BstSNI	TACGTA	1 cut(s)	32
BstV1I	GCAGC	2 cut(s)	3, 226
BtsI	GCAGTG	1 cut(s)	209
BtsIMutI	CAGTG	2 cut(s)	150, 209
CfoI	GCGC	1 cut(s)	245
Cfr13I	GGNCC	1 cut(s)	100
Csp6I	GTAC	3 cut(s)	33, 298, 304
CviAII	CATG	3 cut(s)	49, 91, 104
CviQI	GTAC	3 cut(s)	33, 298, 304
DpnI	GATC	3 cut(s)	89, 149, 330
DpnII	GATC	3 cut(s)	87, 147, 328
Eco105I	TACGTA	1 cut(s)	32
Eco130I	CCWWGG	2 cut(s)	267, 393
Eco31I	GGTCTC	2 cut(s)	383, 410
Eco47I	GGWCC	1 cut(s)	100
EcoRII	CCWGG	2 cut(s)	150, 278
EcoT14I	CCWWGG	2 cut(s)	267, 393
ErhI	CCWWGG	2 cut(s)	267, 393
FaeI	CATG	3 cut(s)	52, 94, 107
FaiI	YATR	5 cut(s)	29, 50, 92, 105, 455
FatI	CATG	3 cut(s)	48, 90, 103
FbaI	TGATCA	2 cut(s)	87, 328
Fnu4HI	GCNGC	2 cut(s)	17, 215
Fsp4HI	GCNGC	2 cut(s)	17, 215
FspBI	CTAG	2 cut(s)	44, 481
GlaI	GCGC	1 cut(s)	244
GluI	GCNGC	2 cut(s)	17, 215
GsaI	CCCAGC	1 cut(s)	25
GsuI	CTGGAG	1 cut(s)	301
HhaI	GCGC	1 cut(s)	245
Hin1II	CATG	3 cut(s)	52, 94, 107
Hin6I	GCGC	1 cut(s)	243
HinP1I	GCGC	1 cut(s)	243
HinfI	GANTC	2 cut(s)	4, 184
Hpy188III	TCNNGA	2 cut(s)	44, 406
Hpy99I	CGWCG	1 cut(s)	425
HpyAV	CCTTC	2 cut(s)	233, 431
HpyCH4III	ACNGT	4 cut(s)	37, 134, 403, 421
HpyCH4IV	ACGT	2 cut(s)	31, 444
HpyCH4V	TGCA	4 cut(s)	214, 352, 457, 473
HpyF10VI	GCNNNNNNNGC	2 cut(s)	22, 364
HpySE526I	ACGT	2 cut(s)	31, 444
Hsp92II	CATG	3 cut(s)	52, 94, 107
HspAI	GCGC	1 cut(s)	243
Ksp22I	TGATCA	2 cut(s)	87, 328
Kzo9I	GATC	3 cut(s)	87, 147, 328
Lsp1109I	GCAGC	2 cut(s)	3, 226
MaeI	CTAG	2 cut(s)	44, 481
MaeII	ACGT	2 cut(s)	31, 444
MaeIII	GTNAC	1 cut(s)	397
MalI	GATC	3 cut(s)	89, 149, 330
MboI	GATC	3 cut(s)	87, 147, 328
MboII	GAAGA	3 cut(s)	193, 248, 421
MluCI	AATT	6 cut(s)	54, 63, 71, 246, 432, 459
MnlI	CCTC	3 cut(s)	73, 190, 193
MspR9I	CCNGG	2 cut(s)	152, 280
MvaI	CCWGG	2 cut(s)	152, 280
MwoI	GCNNNNNNNGC	2 cut(s)	22, 364
NdeII	GATC	3 cut(s)	87, 147, 328
NlaIII	CATG	3 cut(s)	52, 94, 107
NlaIV	GGNNCC	1 cut(s)	277
NspI	RCATGY	1 cut(s)	52
PfeI	GAWTC	1 cut(s)	184
PfoI	TCCNGGA	1 cut(s)	150
PkrI	GCNGC	2 cut(s)	18, 216
Ppu21I	YACGTR	1 cut(s)	32
PshAI	GACNNNNGTC	1 cut(s)	422
Psp1406I	AACGTT	1 cut(s)	444
Psp6I	CCWGG	2 cut(s)	150, 278
PspFI	CCCAGC	1 cut(s)	21
PspGI	CCWGG	2 cut(s)	150, 278
PspN4I	GGNNCC	1 cut(s)	277
PspPI	GGNCC	1 cut(s)	100
PstI	CTGCAG	1 cut(s)	216
RsaI	GTAC	3 cut(s)	34, 299, 305
RsaNI	GTAC	3 cut(s)	33, 298, 304
SatI	GCNGC	2 cut(s)	17, 215
Sau3AI	GATC	3 cut(s)	87, 147, 328
Sau96I	GGNCC	1 cut(s)	100
ScrFI	CCNGG	2 cut(s)	152, 280
SetI	ASST	6 cut(s)	34, 102, 177, 273, 395, 447
SfcI	CTRYAG	1 cut(s)	212
SinI	GGWCC	1 cut(s)	100
SnaBI	TACGTA	1 cut(s)	32
Sse9I	AATT	6 cut(s)	54, 63, 71, 246, 432, 459
SsiI	CCGC	1 cut(s)	289
SspMI	CTAG	2 cut(s)	44, 481
StyD4I	CCNGG	2 cut(s)	150, 278
StyI	CCWWGG	2 cut(s)	267, 393
TaaI	ACNGT	4 cut(s)	37, 134, 403, 421
TaiI	ACGT	2 cut(s)	34, 447
TaqI	TCGA	2 cut(s)	129, 360
TasI	AATT	6 cut(s)	54, 63, 71, 246, 432, 459
TatI	WGTACW	2 cut(s)	297, 303
TfiI	GAWTC	1 cut(s)	184
TscAI	CASTG	2 cut(s)	150, 216
TseI	GCWGC	2 cut(s)	16, 214
TspGWI	ACGGA	1 cut(s)	176
TspRI	CASTG	2 cut(s)	150, 216
VpaK11BI	GGWCC	1 cut(s)	100
XbaI	TCTAGA	1 cut(s)	43
XceI	RCATGY	1 cut(s)	52
XspI	CTAG	2 cut(s)	44, 481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.