Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0000780

Physical Location & Seq

Genomic Coordinates Forward (+)

57300380 .. 57301045

Gene Structure 666 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG408300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGCGGTGATGGAGAAGATGATCATGTTCAAGGACCACGTCAGAGATGTGAAACTGACGCTCGAGTGCTTGAAACCAGTGATCCACGAGATAGCGGAATACAACAAGGTGTTGAATCAACCGATGGAGGAATTACAGGATTTAAAGGCAAAACTGGAGGAGGGCGAAGATTTGGTCCGAAAGTGCTCCAAGGTTGGTCCCTGGAGTTTCTGCAAAAGGTACAGATACACCAGCCAGCTTGATCAACTGGACATATCGCTTCACTCACTCTTGCATGTACTGGAACTGCAGAAGACTAGGGATCTCAGGGAGACCTTGGTTACAGTCAGGAACATAGAGAACGTCGTCCGGCGAATTGAAGGAAATATTTCTGCCATGCAAATTAGTCAATCTGTAACTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

134

Amino Acids

15.68

Weight (kDa)

6.43

Isoelectric Point (pI)

52.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	4 - 112	3.5e-22	Arabidopsis broad-spectrum mildew resistance protein RPW8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0000780)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g32810 FvH4_5g32810 FvH4_5g32820 FvH4_5g32830
malus_domestica	MD02G1165800.v1.1 MD15G1022900.v1.1 MD15G1277300.v1.1
prunus_persica	Prupe.5G127600_v2.0.a1
pyrus_communis	pycom02g13140 pycom15g24060 pycom15g24100 pycom15g24130
rosa_chinensis	RchiOBHm_Chr2g0143661 RchiOBHm_Chr7g0230541 RchiOBHm_Chr7g0230551 RchiOBHm_Chr7g0230651 RchiOBHm_Chr7g0230701
rosa_laevigata	RLG00000001482 RLG00000001487 RLG00000002333 RLG00000020057
rosa_multiflora	Rmu_sc0002222.1_g000006 Rmu_sc0002799.1_g000008 Rmu_sc0002799.1_g000010 Rmu_sc0002799.1_g000011 Rmu_sc0002799.1_g000013 Rmu_sc0007883.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101570 Rroxscaffold_3G00229820 Rroxscaffold_3G00229840 Rroxscaffold_3G00229950 Rroxscaffold_3G00230000 Rroxscaffold_3G00230010 Rroxscaffold_3G00230020 Rroxscaffold_3G00230030
rosa_rugosa	Rorug02G0384500 Rorug07G0261400 Rorug07G0261500 Rorug07G0261600 Rorug07G0261700 Rorug07G0261900
rosa_samantha	Rh2AG169200 Rh2AG436600 Rh2BG444200 Rh2CG422900 Rh2DG177700 Rh2DG454500 Rh5BG005200 Rh7AG321600 Rh7AG410000 Rh7AG410100 Rh7AG412600 Rh7AG412700 Rh7AG412800 Rh7AG413700 Rh7AG413800 Rh7CG338100 Rh7CG430500 Rh7CG430600 Rh7CG430800 Rh7CG432500 Rh7CG432600 Rh7DG319700 Rh7DG408100 Rh7DG408200 Rh7DG408300 Rh7DG408400 Rh7DG408500 Rh7DG409300
rosa_wichuraiana	Rw7G034330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	5, 95
AclWI	GGATC	2 cut(s)	76, 309
AfaI	GTAC	2 cut(s)	221, 279
AgsI	TTSAA	4 cut(s)	31, 73, 115, 359
AjiI	CACGTC	1 cut(s)	40
AjnI	CCWGG	1 cut(s)	200
AluBI	AGCT	1 cut(s)	238
AluI	AGCT	1 cut(s)	238
Alw21I	GWGCWC	1 cut(s)	188
Alw26I	GTCTC	1 cut(s)	305
AlwI	GGATC	2 cut(s)	76, 309
Ama87I	CYCGRG	1 cut(s)	62
ArsI	GACNNNNNNTTYG	2 cut(s)	159, 191
Asp700I	GAANNNNTTC	1 cut(s)	367
AspS9I	GGNCC	3 cut(s)	34, 175, 197
AsuHPI	GGTGA	1 cut(s)	19
AvaI	CYCGRG	1 cut(s)	62
AvaII	GGWCC	3 cut(s)	34, 175, 197
BauI	CACGAG	1 cut(s)	86
BbsI	GAAGAC	1 cut(s)	299
Bbv12I	GWGCWC	1 cut(s)	188
BccI	CCATC	2 cut(s)	4, 118
BciT130I	CCWGG	1 cut(s)	202
BclI	TGATCA	2 cut(s)	21, 241
BcoDI	GTCTC	1 cut(s)	305
BfaI	CTAG	1 cut(s)	297
BfmI	CTRYAG	1 cut(s)	287
Bme1390I	CCNGG	1 cut(s)	202
Bme18I	GGWCC	3 cut(s)	34, 175, 197
BmeT110I	CYCGRG	1 cut(s)	62
BmgBI	CACGTC	1 cut(s)	40
BmgT120I	GGNCC	3 cut(s)	34, 175, 197
BmiI	GGNNCC	1 cut(s)	199
BmrFI	CCNGG	1 cut(s)	202
BpiI	GAAGAC	1 cut(s)	299
BpmI	CTGGAG	2 cut(s)	176, 223
BsaI	GGTCTC	1 cut(s)	305
BsaJI	CCNNGG	3 cut(s)	189, 200, 315
Bse1I	ACTGG	4 cut(s)	77, 159, 252, 285
BseBI	CCWGG	1 cut(s)	202
BseDI	CCNNGG	3 cut(s)	189, 200, 315
BseMII	CTCAG	1 cut(s)	319
BseNI	ACTGG	4 cut(s)	77, 159, 252, 285
BseRI	GAGGAG	1 cut(s)	173
BsiHKAI	GWGCWC	1 cut(s)	188
BsiHKCI	CYCGRG	1 cut(s)	62
BsiSI	CCGG	1 cut(s)	349
BslFI	GGGAC	1 cut(s)	183
BsmAI	GTCTC	1 cut(s)	305
BsmFI	GGGAC	1 cut(s)	183
Bso31I	GGTCTC	1 cut(s)	305
BsoBI	CYCGRG	1 cut(s)	62
Bsp1286I	GDGCHC	1 cut(s)	188
Bsp143I	GATC	4 cut(s)	21, 81, 241, 301
BspACI	CCGC	2 cut(s)	5, 95
BspCNI	CTCAG	1 cut(s)	318
BspLI	GGNNCC	1 cut(s)	199
BspMAI	CTGCAG	1 cut(s)	291
BspPI	GGATC	2 cut(s)	76, 309
BspTNI	GGTCTC	1 cut(s)	305
BsrI	ACTGG	4 cut(s)	77, 159, 252, 285
BssECI	CCNNGG	3 cut(s)	189, 200, 315
BssMI	GATC	4 cut(s)	21, 81, 241, 301
BssSI	CACGAG	1 cut(s)	86
BssT1I	CCWWGG	2 cut(s)	189, 315
Bst2BI	CACGAG	1 cut(s)	86
Bst2UI	CCWGG	1 cut(s)	202
Bst4CI	ACNGT	1 cut(s)	325
BstC8I	GCNNGC	1 cut(s)	236
BstDEI	CTNAG	1 cut(s)	305
BstKTI	GATC	4 cut(s)	24, 84, 244, 304
BstMAI	GTCTC	1 cut(s)	305
BstMBI	GATC	4 cut(s)	21, 81, 241, 301
BstNI	CCWGG	1 cut(s)	202
BstNSI	RCATGY	1 cut(s)	278
BstSCI	CCNGG	1 cut(s)	200
BstSFI	CTRYAG	1 cut(s)	287
BstV2I	GAAGAC	1 cut(s)	299
BstX2I	RGATCY	1 cut(s)	301
BstYI	RGATCY	1 cut(s)	301
BtrI	CACGTC	1 cut(s)	40
BtsIMutI	CAGTG	1 cut(s)	84
Cac8I	GCNNGC	1 cut(s)	236
Cfr13I	GGNCC	3 cut(s)	34, 175, 197
CseI	GACGC	1 cut(s)	67
Csp6I	GTAC	2 cut(s)	220, 278
CviAII	CATG	3 cut(s)	25, 275, 376
CviJI	RGCY	2 cut(s)	234, 238
CviKI_1	RGCY	2 cut(s)	234, 238
CviQI	GTAC	2 cut(s)	220, 278
DdeI	CTNAG	1 cut(s)	305
DpnI	GATC	4 cut(s)	23, 83, 243, 303
DpnII	GATC	4 cut(s)	21, 81, 241, 301
DraI	TTTAAA	1 cut(s)	144
Eco130I	CCWWGG	2 cut(s)	189, 315
Eco31I	GGTCTC	1 cut(s)	305
Eco47I	GGWCC	3 cut(s)	34, 175, 197
Eco88I	CYCGRG	1 cut(s)	62
EcoRII	CCWGG	1 cut(s)	200
EcoT14I	CCWWGG	2 cut(s)	189, 315
ErhI	CCWWGG	2 cut(s)	189, 315
FaeI	CATG	3 cut(s)	28, 278, 379
FaiI	YATR	5 cut(s)	26, 254, 276, 335, 377
FaqI	GGGAC	1 cut(s)	183
FatI	CATG	3 cut(s)	24, 274, 375
FbaI	TGATCA	2 cut(s)	21, 241
FspBI	CTAG	1 cut(s)	297
GsuI	CTGGAG	2 cut(s)	176, 223
HapII	CCGG	1 cut(s)	349
HgaI	GACGC	1 cut(s)	67
Hin1II	CATG	3 cut(s)	28, 278, 379
HinfI	GANTC	1 cut(s)	115
HpaII	CCGG	1 cut(s)	349
HphI	GGTGA	1 cut(s)	19
Hpy188I	TCNGA	2 cut(s)	44, 179
Hpy188III	TCNNGA	1 cut(s)	328
Hpy99I	CGWCG	1 cut(s)	347
HpyAV	CCTTC	1 cut(s)	353
HpyCH4III	ACNGT	1 cut(s)	325
HpyCH4IV	ACGT	2 cut(s)	39, 342
HpyCH4V	TGCA	4 cut(s)	213, 274, 289, 379
HpyF3I	CTNAG	1 cut(s)	305
HpySE526I	ACGT	2 cut(s)	39, 342
Hsp92II	CATG	3 cut(s)	28, 278, 379
Ksp22I	TGATCA	2 cut(s)	21, 241
Kzo9I	GATC	4 cut(s)	21, 81, 241, 301
LmnI	GCTCC	1 cut(s)	191
MaeI	CTAG	1 cut(s)	297
MaeII	ACGT	2 cut(s)	39, 342
MaeIII	GTNAC	2 cut(s)	319, 394
MalI	GATC	4 cut(s)	23, 83, 243, 303
MboI	GATC	4 cut(s)	21, 81, 241, 301
MboII	GAAGA	3 cut(s)	28, 179, 304
MflI	RGATCY	1 cut(s)	301
MhlI	GDGCHC	1 cut(s)	188
MluCI	AATT	3 cut(s)	131, 354, 381
MnlI	CCTC	3 cut(s)	121, 151, 154
MroXI	GAANNNNTTC	1 cut(s)	367
MseI	TTAA	1 cut(s)	143
MspI	CCGG	1 cut(s)	349
MspR9I	CCNGG	1 cut(s)	202
MvaI	CCWGG	1 cut(s)	202
NdeII	GATC	4 cut(s)	21, 81, 241, 301
NlaIII	CATG	3 cut(s)	28, 278, 379
NlaIV	GGNNCC	1 cut(s)	199
NspI	RCATGY	1 cut(s)	278
PaeR7I	CTCGAG	1 cut(s)	62
PdmI	GAANNNNTTC	1 cut(s)	367
PfeI	GAWTC	1 cut(s)	115
PflFI	GACNNNGTC	1 cut(s)	38
Psp6I	CCWGG	1 cut(s)	200
PspGI	CCWGG	1 cut(s)	200
PspN4I	GGNNCC	1 cut(s)	199
PspPI	GGNCC	3 cut(s)	34, 175, 197
PspXI	VCTCGAGB	1 cut(s)	62
PstI	CTGCAG	1 cut(s)	291
PsuI	RGATCY	1 cut(s)	301
PsyI	GACNNNGTC	1 cut(s)	38
RsaI	GTAC	2 cut(s)	221, 279
RsaNI	GTAC	2 cut(s)	220, 278
SaqAI	TTAA	1 cut(s)	143
Sau3AI	GATC	4 cut(s)	21, 81, 241, 301
Sau96I	GGNCC	3 cut(s)	34, 175, 197
ScrFI	CCNGG	1 cut(s)	202
SduI	GDGCHC	1 cut(s)	188
SetI	ASST	7 cut(s)	42, 111, 195, 221, 240, 317, 345
SfcI	CTRYAG	1 cut(s)	287
Sfr274I	CTCGAG	1 cut(s)	62
SinI	GGWCC	3 cut(s)	34, 175, 197
SlaI	CTCGAG	1 cut(s)	62
SmlI	CTYRAG	1 cut(s)	62
SmoI	CTYRAG	1 cut(s)	62
Sse9I	AATT	3 cut(s)	131, 354, 381
SsiI	CCGC	2 cut(s)	5, 95
SspI	AATATT	1 cut(s)	367
SspMI	CTAG	1 cut(s)	297
StyD4I	CCNGG	1 cut(s)	200
StyI	CCWWGG	2 cut(s)	189, 315
TaaI	ACNGT	1 cut(s)	325
TaiI	ACGT	2 cut(s)	42, 345
TaqI	TCGA	1 cut(s)	63
TasI	AATT	3 cut(s)	131, 354, 381
TatI	WGTACW	1 cut(s)	277
TfiI	GAWTC	1 cut(s)	115
Tru1I	TTAA	1 cut(s)	143
Tru9I	TTAA	1 cut(s)	143
TscAI	CASTG	1 cut(s)	84
TspRI	CASTG	1 cut(s)	84
Tth111I	GACNNNGTC	1 cut(s)	38
VpaK11BI	GGWCC	3 cut(s)	34, 175, 197
XceI	RCATGY	1 cut(s)	278
XhoI	CTCGAG	1 cut(s)	62
XmnI	GAANNNNTTC	1 cut(s)	367
XspI	CTAG	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.