Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000780

Physical Location & Seq

Genomic Coordinates Reverse (-)

23479415 .. 23479946

Gene Structure 532 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00101570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGAGGATGGCAAAGATCTTATCAGCAAGTGCTCGAAGATTCGGCAATGGAACATCTACAAGAAGTACGAGTACGCCAACAAACTTGTCGAGTGGGATCAGTCGCTTCGGAGACAGTTGGATGTACTGAAGGTGCAAGAGGCGAGGGACGTGAAGGAGAACACGGTTTTGTTGAGGACTATAGAGGCGGCGGTCAAACGAATCGAAGAGAATGCTGCGGCGGTAAGAAATTATAGCTCTACAGTTGAAGCTCGTGATCTGGAGAGACGTGTTGTTGAGGATCCATCTAATAAGAGTTTTGGTTCCGAAGAAGACGACGGAGAGGGTTGTTCTGGAAAGACAGAAAGGGATGAGTTGAATTTGAGTGCTGGAGATGAGGTTGAAATTGAGTATGAAGTCGACGACTGGTTTTATGTGAAGAAGAAACGCCCCGGGAAGGATGGGAAAATGGCTGGTCTAGTCCCAGTCCTCTATGTGAGATATTTGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

NB-ARC RPW8

Protein Analysis

163

Amino Acids

18.84

Weight (kDa)

5.08

Isoelectric Point (pI)

59.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	1 - 62	3.5e-12	Arabidopsis broad-spectrum mildew resistance protein RPW8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000780)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g32810 FvH4_5g32810 FvH4_5g32820 FvH4_5g32830
malus_domestica	MD02G1165800.v1.1 MD15G1022900.v1.1 MD15G1277300.v1.1
prunus_persica	Prupe.5G127600_v2.0.a1
pyrus_communis	pycom02g13140 pycom15g24060 pycom15g24100 pycom15g24130
rosa_chinensis	RchiOBHm_Chr2g0143661 RchiOBHm_Chr7g0230541 RchiOBHm_Chr7g0230551 RchiOBHm_Chr7g0230651 RchiOBHm_Chr7g0230701
rosa_laevigata	RLG00000001482 RLG00000001487 RLG00000002333 RLG00000020057
rosa_multiflora	Rmu_sc0002222.1_g000006 Rmu_sc0002799.1_g000008 Rmu_sc0002799.1_g000010 Rmu_sc0002799.1_g000011 Rmu_sc0002799.1_g000013 Rmu_sc0007883.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101570 Rroxscaffold_3G00229820 Rroxscaffold_3G00229840 Rroxscaffold_3G00229950 Rroxscaffold_3G00230000 Rroxscaffold_3G00230010 Rroxscaffold_3G00230020 Rroxscaffold_3G00230030
rosa_rugosa	Rorug02G0384500 Rorug07G0261400 Rorug07G0261500 Rorug07G0261600 Rorug07G0261700 Rorug07G0261900
rosa_samantha	Rh2AG169200 Rh2AG436600 Rh2BG444200 Rh2CG422900 Rh2DG177700 Rh2DG454500 Rh5BG005200 Rh7AG321600 Rh7AG410000 Rh7AG410100 Rh7AG412600 Rh7AG412700 Rh7AG412800 Rh7AG413700 Rh7AG413800 Rh7CG338100 Rh7CG430500 Rh7CG430600 Rh7CG430800 Rh7CG432500 Rh7CG432600 Rh7DG319700 Rh7DG408100 Rh7DG408200 Rh7DG408300 Rh7DG408400 Rh7DG408500 Rh7DG409300
rosa_wichuraiana	Rw7G034330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	399
AciI	CCGC	4 cut(s)	188, 191, 218, 221
AclWI	GGATC	3 cut(s)	105, 275, 288
AcsI	RAATTY	1 cut(s)	358
AcuI	CTGAAG	1 cut(s)	149
AfaI	GTAC	3 cut(s)	68, 74, 126
AfiI	CCNNNNNNNGG	1 cut(s)	436
AflIII	ACRYGT	1 cut(s)	268
AgsI	TTSAA	3 cut(s)	248, 358, 383
AjiI	CACGTC	2 cut(s)	151, 269
AluBI	AGCT	2 cut(s)	237, 251
AluI	AGCT	2 cut(s)	237, 251
Alw21I	GWGCWC	1 cut(s)	35
Alw26I	GTCTC	2 cut(s)	106, 259
AlwI	GGATC	3 cut(s)	105, 275, 288
Ama87I	CYCGRG	1 cut(s)	431
ApeKI	GCWGC	1 cut(s)	215
ApoI	RAATTY	1 cut(s)	358
AsuC2I	CCSGG	2 cut(s)	432, 433
AvaI	CYCGRG	1 cut(s)	431
BamHI	GGATCC	1 cut(s)	280
BarI	GAAGNNNNNNTAC	2 cut(s)	56, 88
BauI	CACGAG	1 cut(s)	252
BbsI	GAAGAC	1 cut(s)	318
Bbv12I	GWGCWC	1 cut(s)	35
BbvI	GCAGC	1 cut(s)	202
BccI	CCATC	3 cut(s)	2, 292, 434
BcgI	CGANNNNNNTGC	2 cut(s)	194, 228
BcnI	CCSGG	2 cut(s)	432, 433
BcoDI	GTCTC	2 cut(s)	106, 259
BfaI	CTAG	1 cut(s)	458
BfmI	CTRYAG	2 cut(s)	180, 240
BglII	AGATCT	1 cut(s)	16
BisI	GCNGC	3 cut(s)	189, 216, 219
BlsI	GCNGC	3 cut(s)	190, 217, 220
Bme1390I	CCNGG	2 cut(s)	432, 433
BmeT110I	CYCGRG	1 cut(s)	431
BmgBI	CACGTC	2 cut(s)	151, 269
BmiI	GGNNCC	2 cut(s)	282, 304
BmrFI	CCNGG	2 cut(s)	432, 433
BmrI	ACTGGG	1 cut(s)	458
BmuI	ACTGGG	1 cut(s)	458
BpiI	GAAGAC	1 cut(s)	318
BpmI	CTGGAG	2 cut(s)	281, 390
BpuMI	CCSGG	2 cut(s)	432, 433
BsaJI	CCNNGG	2 cut(s)	430, 431
BsaXI	ACNNNNNCTCC	2 cut(s)	363, 393
Bsc4I	CCNNNNNNNGG	1 cut(s)	436
Bse1I	ACTGG	2 cut(s)	410, 464
Bse3DI	GCAATG	1 cut(s)	53
BseDI	CCNNGG	2 cut(s)	430, 431
BseGI	GGATG	4 cut(s)	13, 127, 355, 445
BseLI	CCNNNNNNNGG	1 cut(s)	436
BseMI	GCAATG	1 cut(s)	53
BseNI	ACTGG	2 cut(s)	410, 464
BseXI	GCAGC	1 cut(s)	202
BsiHKAI	GWGCWC	1 cut(s)	35
BsiHKCI	CYCGRG	1 cut(s)	431
BsiSI	CCGG	1 cut(s)	432
BslFI	GGGAC	2 cut(s)	161, 446
BslI	CCNNNNNNNGG	1 cut(s)	436
BsmAI	GTCTC	2 cut(s)	106, 259
BsmBI	CGTCTC	1 cut(s)	259
BsmFI	GGGAC	2 cut(s)	161, 446
BsmI	GAATGC	1 cut(s)	217
BsoBI	CYCGRG	1 cut(s)	431
Bsp1286I	GDGCHC	1 cut(s)	35
Bsp143I	GATC	4 cut(s)	16, 97, 256, 280
BspACI	CCGC	4 cut(s)	188, 191, 218, 221
BspLI	GGNNCC	2 cut(s)	282, 304
BspPI	GGATC	3 cut(s)	105, 275, 288
BsrDI	GCAATG	1 cut(s)	53
BsrI	ACTGG	2 cut(s)	410, 464
BssECI	CCNNGG	2 cut(s)	430, 431
BssMI	GATC	4 cut(s)	16, 97, 256, 280
BssSI	CACGAG	1 cut(s)	252
Bst2BI	CACGAG	1 cut(s)	252
Bst4CI	ACNGT	3 cut(s)	117, 166, 244
Bst6I	CTCTTC	1 cut(s)	201
BstF5I	GGATG	4 cut(s)	13, 127, 355, 445
BstKTI	GATC	4 cut(s)	19, 100, 259, 283
BstMAI	GTCTC	2 cut(s)	106, 259
BstMBI	GATC	4 cut(s)	16, 97, 256, 280
BstSCI	CCNGG	2 cut(s)	430, 431
BstSFI	CTRYAG	2 cut(s)	180, 240
BstV1I	GCAGC	1 cut(s)	202
BstV2I	GAAGAC	1 cut(s)	318
BstX2I	RGATCY	2 cut(s)	16, 280
BstYI	RGATCY	2 cut(s)	16, 280
BtrI	CACGTC	2 cut(s)	151, 269
BtsCI	GGATG	4 cut(s)	13, 127, 355, 445
Cfr9I	CCCGGG	1 cut(s)	431
Csp6I	GTAC	3 cut(s)	67, 73, 125
CviJI	RGCY	3 cut(s)	237, 251, 452
CviKI_1	RGCY	3 cut(s)	237, 251, 452
CviQI	GTAC	3 cut(s)	67, 73, 125
DpnI	GATC	4 cut(s)	18, 99, 258, 282
DpnII	GATC	4 cut(s)	16, 97, 256, 280
Eam1104I	CTCTTC	1 cut(s)	201
EarI	CTCTTC	1 cut(s)	201
Eco57I	CTGAAG	1 cut(s)	149
Eco88I	CYCGRG	1 cut(s)	431
Esp3I	CGTCTC	1 cut(s)	259
FaiI	YATR	5 cut(s)	182, 234, 393, 414, 474
FaqI	GGGAC	2 cut(s)	161, 446
FblI	GTMKAC	1 cut(s)	399
Fnu4HI	GCNGC	3 cut(s)	189, 216, 219
FokI	GGATG	4 cut(s)	20, 134, 362, 452
Fsp4HI	GCNGC	3 cut(s)	189, 216, 219
FspBI	CTAG	1 cut(s)	458
GluI	GCNGC	3 cut(s)	189, 216, 219
GsuI	CTGGAG	2 cut(s)	281, 390
HapII	CCGG	1 cut(s)	432
HincII	GTYRAC	1 cut(s)	400
HindII	GTYRAC	1 cut(s)	400
HinfI	GANTC	2 cut(s)	40, 201
HpaII	CCGG	1 cut(s)	432
Hpy166II	GTNNAC	1 cut(s)	400
Hpy188I	TCNGA	2 cut(s)	111, 307
Hpy188III	TCNNGA	4 cut(s)	254, 260, 333, 489
Hpy8I	GTNNAC	1 cut(s)	400
Hpy99I	CGWCG	2 cut(s)	320, 404
HpyAV	CCTTC	3 cut(s)	124, 148, 430
HpyCH4III	ACNGT	3 cut(s)	117, 166, 244
HpyCH4IV	ACGT	2 cut(s)	150, 268
HpyCH4V	TGCA	1 cut(s)	136
HpySE526I	ACGT	2 cut(s)	150, 268
Kzo9I	GATC	4 cut(s)	16, 97, 256, 280
LpnPI	CCDG	7 cut(s)	245, 318, 354, 391, 438, 445, 477
Lsp1109I	GCAGC	1 cut(s)	202
MaeI	CTAG	1 cut(s)	458
MaeII	ACGT	2 cut(s)	150, 268
MalI	GATC	4 cut(s)	18, 99, 258, 282
MboI	GATC	4 cut(s)	16, 97, 256, 280
MboII	GAAGA	6 cut(s)	49, 218, 320, 323, 430, 433
MflI	RGATCY	2 cut(s)	16, 280
MhlI	GDGCHC	1 cut(s)	35
MluCI	AATT	3 cut(s)	229, 358, 384
MmeI	TCCRAC	1 cut(s)	99
MnlI	CCTC	8 cut(s)	133, 138, 168, 178, 271, 316, 370, 479
MspI	CCGG	1 cut(s)	432
MspR9I	CCNGG	2 cut(s)	432, 433
Mva1269I	GAATGC	1 cut(s)	217
NciI	CCSGG	2 cut(s)	432, 433
NdeII	GATC	4 cut(s)	16, 97, 256, 280
NlaIV	GGNNCC	2 cut(s)	282, 304
PctI	GAATGC	1 cut(s)	217
PfeI	GAWTC	2 cut(s)	40, 201
PkrI	GCNGC	3 cut(s)	190, 217, 220
PspN4I	GGNNCC	2 cut(s)	282, 304
PsuI	RGATCY	2 cut(s)	16, 280
RsaI	GTAC	3 cut(s)	68, 74, 126
RsaNI	GTAC	3 cut(s)	67, 73, 125
SalI	GTCGAC	1 cut(s)	398
SatI	GCNGC	3 cut(s)	189, 216, 219
Sau3AI	GATC	4 cut(s)	16, 97, 256, 280
ScrFI	CCNGG	2 cut(s)	432, 433
SduI	GDGCHC	1 cut(s)	35
SetI	ASST	6 cut(s)	135, 153, 239, 253, 271, 381
SfcI	CTRYAG	2 cut(s)	180, 240
SmaI	CCCGGG	1 cut(s)	433
Sse9I	AATT	3 cut(s)	229, 358, 384
SsiI	CCGC	4 cut(s)	188, 191, 218, 221
SspMI	CTAG	1 cut(s)	458
StyD4I	CCNGG	2 cut(s)	430, 431
TaaI	ACNGT	3 cut(s)	117, 166, 244
TaiI	ACGT	2 cut(s)	153, 271
TaqI	TCGA	4 cut(s)	35, 90, 204, 399
TasI	AATT	3 cut(s)	229, 358, 384
TatI	WGTACW	1 cut(s)	124
TauI	GCSGC	2 cut(s)	191, 221
TfiI	GAWTC	2 cut(s)	40, 201
TseI	GCWGC	1 cut(s)	215
TspDTI	ATGAA	1 cut(s)	408
TspGWI	ACGGA	1 cut(s)	333
TspMI	CCCGGG	1 cut(s)	431
XapI	RAATTY	1 cut(s)	358
XmaI	CCCGGG	1 cut(s)	431
XmiI	GTMKAC	1 cut(s)	399
XspI	CTAG	1 cut(s)	458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.