Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000780

Physical Location & Seq

Genomic Coordinates Reverse (-)

16265924 .. 16266550

Gene Structure 627 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001487

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGACTTTCCGAATGACTTTCTCCTCCACTTCTTTGAAGCCCCAGCACATACGTACTGTTGTTCTAGACATGCTAATTGATGGAATTACAGAATTGATGGAGAAGATGATCATGTTCAAGGTCCACGTGAGAGATGTGAAATCGACGCTCGACTGTTTGAAACCAGTGATCCAGGAGATAACGGAATACAACGAGGTGTTGAAGAATCAACCAATGGAGGAGGAACAAGCACTGCAGCACTTGAAATCGCAAATAAAAGAAGGCGCAATTCTGGTTCAAAAGTGTTCCAAGGTTGGTGCCTGGAGTTTCCGCAAGAAGTACAAGTACAGCAACCAACTCTTTCAACTTGATCAATCGCTTCACACACTCTTGCAATTGCTCGAAGTGCAGAAAGCAAGAGATGTCTGGGAGACCTTGGTTACGGTCAGGAAGATAGAGACCGTCGTCCAGCGAATTGAAGGAAACGTTTGTGCTATGCAAATTAGTCAGTCTGCAACTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

168

Amino Acids

19.43

Weight (kDa)

8.73

Isoelectric Point (pI)

37.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	21 - 149	9.7e-20	Arabidopsis broad-spectrum mildew resistance protein RPW8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000780)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g32810 FvH4_5g32810 FvH4_5g32820 FvH4_5g32830
malus_domestica	MD02G1165800.v1.1 MD15G1022900.v1.1 MD15G1277300.v1.1
prunus_persica	Prupe.5G127600_v2.0.a1
pyrus_communis	pycom02g13140 pycom15g24060 pycom15g24100 pycom15g24130
rosa_chinensis	RchiOBHm_Chr2g0143661 RchiOBHm_Chr7g0230541 RchiOBHm_Chr7g0230551 RchiOBHm_Chr7g0230651 RchiOBHm_Chr7g0230701
rosa_laevigata	RLG00000001482 RLG00000001487 RLG00000002333 RLG00000020057
rosa_multiflora	Rmu_sc0002222.1_g000006 Rmu_sc0002799.1_g000008 Rmu_sc0002799.1_g000010 Rmu_sc0002799.1_g000011 Rmu_sc0002799.1_g000013 Rmu_sc0007883.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101570 Rroxscaffold_3G00229820 Rroxscaffold_3G00229840 Rroxscaffold_3G00229950 Rroxscaffold_3G00230000 Rroxscaffold_3G00230010 Rroxscaffold_3G00230020 Rroxscaffold_3G00230030
rosa_rugosa	Rorug02G0384500 Rorug07G0261400 Rorug07G0261500 Rorug07G0261600 Rorug07G0261700 Rorug07G0261900
rosa_samantha	Rh2AG169200 Rh2AG436600 Rh2BG444200 Rh2CG422900 Rh2DG177700 Rh2DG454500 Rh5BG005200 Rh7AG321600 Rh7AG410000 Rh7AG410100 Rh7AG412600 Rh7AG412700 Rh7AG412800 Rh7AG413700 Rh7AG413800 Rh7CG338100 Rh7CG430500 Rh7CG430600 Rh7CG430800 Rh7CG432500 Rh7CG432600 Rh7DG319700 Rh7DG408100 Rh7DG408200 Rh7DG408300 Rh7DG408400 Rh7DG408500 Rh7DG409300
rosa_wichuraiana	Rw7G034330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	296
AciI	CCGC	1 cut(s)	310
AclI	AACGTT	1 cut(s)	465
AclWI	GGATC	1 cut(s)	163
AcvI	CACGTG	1 cut(s)	127
AfaI	GTAC	3 cut(s)	55, 320, 326
AgsI	TTSAA	8 cut(s)	37, 118, 160, 202, 244, 278, 344, 458
AjnI	CCWGG	2 cut(s)	171, 299
Alw26I	GTCTC	2 cut(s)	404, 431
AlwI	GGATC	1 cut(s)	163
ApeKI	GCWGC	1 cut(s)	235
AspLEI	GCGC	1 cut(s)	266
AspS9I	GGNCC	1 cut(s)	121
AvaII	GGWCC	1 cut(s)	121
BanI	GGYRCC	1 cut(s)	296
BarI	GAAGNNNNNNTAC	2 cut(s)	308, 340
BbrPI	CACGTG	1 cut(s)	127
BbvI	GCAGC	1 cut(s)	247
BccI	CCATC	2 cut(s)	74, 91
BciT130I	CCWGG	2 cut(s)	173, 301
BclI	TGATCA	2 cut(s)	108, 349
BcoDI	GTCTC	2 cut(s)	404, 431
BfaI	CTAG	2 cut(s)	65, 502
BfmI	CTRYAG	1 cut(s)	233
BisI	GCNGC	1 cut(s)	236
BlsI	GCNGC	1 cut(s)	237
Bme1390I	CCNGG	2 cut(s)	173, 301
Bme18I	GGWCC	1 cut(s)	121
BmgT120I	GGNCC	1 cut(s)	121
BmiI	GGNNCC	1 cut(s)	298
BmrFI	CCNGG	2 cut(s)	173, 301
BoxI	GACNNNNGTC	1 cut(s)	443
BpmI	CTGGAG	1 cut(s)	322
BsaAI	YACGTR	2 cut(s)	53, 127
BsaI	GGTCTC	2 cut(s)	404, 431
BsaJI	CCNNGG	2 cut(s)	288, 414
Bse1I	ACTGG	1 cut(s)	164
BseBI	CCWGG	2 cut(s)	173, 301
BseDI	CCNNGG	2 cut(s)	288, 414
BseNI	ACTGG	1 cut(s)	164
BseRI	GAGGAG	2 cut(s)	13, 233
BseXI	GCAGC	1 cut(s)	247
BseYI	CCCAGC	1 cut(s)	42
BsgI	GTGCAG	1 cut(s)	407
BshNI	GGYRCC	1 cut(s)	296
BsmAI	GTCTC	2 cut(s)	404, 431
Bso31I	GGTCTC	2 cut(s)	404, 431
Bsp143I	GATC	3 cut(s)	108, 168, 349
BspACI	CCGC	1 cut(s)	310
BspLI	GGNNCC	1 cut(s)	298
BspMAI	CTGCAG	1 cut(s)	237
BspPI	GGATC	1 cut(s)	163
BspT107I	GGYRCC	1 cut(s)	296
BspTNI	GGTCTC	2 cut(s)	404, 431
BsrI	ACTGG	1 cut(s)	164
BssECI	CCNNGG	2 cut(s)	288, 414
BssMI	GATC	3 cut(s)	108, 168, 349
BssT1I	CCWWGG	2 cut(s)	288, 414
Bst2UI	CCWGG	2 cut(s)	173, 301
Bst4CI	ACNGT	4 cut(s)	58, 155, 424, 442
BstBAI	YACGTR	2 cut(s)	53, 127
BstHHI	GCGC	1 cut(s)	266
BstKTI	GATC	3 cut(s)	111, 171, 352
BstMAI	GTCTC	2 cut(s)	404, 431
BstMBI	GATC	3 cut(s)	108, 168, 349
BstMWI	GCNNNNNNNGC	1 cut(s)	385
BstNI	CCWGG	2 cut(s)	173, 301
BstNSI	RCATGY	1 cut(s)	73
BstPAI	GACNNNNGTC	1 cut(s)	443
BstSCI	CCNGG	2 cut(s)	171, 299
BstSFI	CTRYAG	1 cut(s)	233
BstSNI	TACGTA	1 cut(s)	53
BstV1I	GCAGC	1 cut(s)	247
BtsI	GCAGTG	1 cut(s)	230
BtsIMutI	CAGTG	2 cut(s)	171, 230
CfoI	GCGC	1 cut(s)	266
Cfr13I	GGNCC	1 cut(s)	121
CseI	GACGC	1 cut(s)	154
Csp6I	GTAC	3 cut(s)	54, 319, 325
CviAII	CATG	2 cut(s)	70, 112
CviJI	RGCY	1 cut(s)	40
CviKI_1	RGCY	1 cut(s)	40
CviQI	GTAC	3 cut(s)	54, 319, 325
DpnI	GATC	3 cut(s)	110, 170, 351
DpnII	GATC	3 cut(s)	108, 168, 349
Eco105I	TACGTA	1 cut(s)	53
Eco130I	CCWWGG	2 cut(s)	288, 414
Eco31I	GGTCTC	2 cut(s)	404, 431
Eco47I	GGWCC	1 cut(s)	121
Eco72I	CACGTG	1 cut(s)	127
EcoRII	CCWGG	2 cut(s)	171, 299
EcoT14I	CCWWGG	2 cut(s)	288, 414
ErhI	CCWWGG	2 cut(s)	288, 414
FaeI	CATG	2 cut(s)	73, 115
FaiI	YATR	4 cut(s)	50, 71, 113, 476
FatI	CATG	2 cut(s)	69, 111
FbaI	TGATCA	2 cut(s)	108, 349
Fnu4HI	GCNGC	1 cut(s)	236
Fsp4HI	GCNGC	1 cut(s)	236
FspBI	CTAG	2 cut(s)	65, 502
GlaI	GCGC	1 cut(s)	265
GluI	GCNGC	1 cut(s)	236
GsaI	CCCAGC	1 cut(s)	46
GsuI	CTGGAG	1 cut(s)	322
HgaI	GACGC	1 cut(s)	154
HhaI	GCGC	1 cut(s)	266
Hin1II	CATG	2 cut(s)	73, 115
Hin6I	GCGC	1 cut(s)	264
HinP1I	GCGC	1 cut(s)	264
HinfI	GANTC	1 cut(s)	205
Hpy166II	GTNNAC	1 cut(s)	124
Hpy188I	TCNGA	1 cut(s)	11
Hpy188III	TCNNGA	2 cut(s)	65, 427
Hpy8I	GTNNAC	1 cut(s)	124
Hpy99I	CGWCG	2 cut(s)	148, 446
HpyAV	CCTTC	2 cut(s)	254, 452
HpyCH4III	ACNGT	4 cut(s)	58, 155, 424, 442
HpyCH4IV	ACGT	3 cut(s)	52, 126, 465
HpyCH4V	TGCA	5 cut(s)	235, 373, 388, 478, 494
HpyF10VI	GCNNNNNNNGC	1 cut(s)	385
HpySE526I	ACGT	3 cut(s)	52, 126, 465
Hsp92II	CATG	2 cut(s)	73, 115
HspAI	GCGC	1 cut(s)	264
Ksp22I	TGATCA	2 cut(s)	108, 349
Kzo9I	GATC	3 cut(s)	108, 168, 349
Lsp1109I	GCAGC	1 cut(s)	247
MaeI	CTAG	2 cut(s)	65, 502
MaeII	ACGT	3 cut(s)	52, 126, 465
MaeIII	GTNAC	1 cut(s)	418
MalI	GATC	3 cut(s)	110, 170, 351
MboI	GATC	3 cut(s)	108, 168, 349
MboII	GAAGA	3 cut(s)	115, 214, 442
MfeI	CAATTG	1 cut(s)	374
MluCI	AATT	7 cut(s)	75, 84, 92, 267, 374, 453, 480
MnlI	CCTC	4 cut(s)	34, 187, 211, 214
MspR9I	CCNGG	2 cut(s)	173, 301
MunI	CAATTG	1 cut(s)	374
MvaI	CCWGG	2 cut(s)	173, 301
MwoI	GCNNNNNNNGC	1 cut(s)	385
NdeII	GATC	3 cut(s)	108, 168, 349
NlaIII	CATG	2 cut(s)	73, 115
NlaIV	GGNNCC	1 cut(s)	298
NspI	RCATGY	1 cut(s)	73
PfeI	GAWTC	1 cut(s)	205
PfoI	TCCNGGA	1 cut(s)	171
PkrI	GCNGC	1 cut(s)	237
PmaCI	CACGTG	1 cut(s)	127
PmlI	CACGTG	1 cut(s)	127
Ppu21I	YACGTR	2 cut(s)	53, 127
PshAI	GACNNNNGTC	1 cut(s)	443
Psp1406I	AACGTT	1 cut(s)	465
Psp6I	CCWGG	2 cut(s)	171, 299
PspCI	CACGTG	1 cut(s)	127
PspFI	CCCAGC	1 cut(s)	42
PspGI	CCWGG	2 cut(s)	171, 299
PspN4I	GGNNCC	1 cut(s)	298
PspPI	GGNCC	1 cut(s)	121
PstI	CTGCAG	1 cut(s)	237
RsaI	GTAC	3 cut(s)	55, 320, 326
RsaNI	GTAC	3 cut(s)	54, 319, 325
SatI	GCNGC	1 cut(s)	236
Sau3AI	GATC	3 cut(s)	108, 168, 349
Sau96I	GGNCC	1 cut(s)	121
ScrFI	CCNGG	2 cut(s)	173, 301
SetI	ASST	7 cut(s)	55, 123, 129, 198, 294, 416, 468
SfcI	CTRYAG	1 cut(s)	233
SinI	GGWCC	1 cut(s)	121
SnaBI	TACGTA	1 cut(s)	53
Sse9I	AATT	7 cut(s)	75, 84, 92, 267, 374, 453, 480
SsiI	CCGC	1 cut(s)	310
SspMI	CTAG	2 cut(s)	65, 502
StyD4I	CCNGG	2 cut(s)	171, 299
StyI	CCWWGG	2 cut(s)	288, 414
TaaI	ACNGT	4 cut(s)	58, 155, 424, 442
TaiI	ACGT	3 cut(s)	55, 129, 468
TaqI	TCGA	3 cut(s)	143, 150, 381
TasI	AATT	7 cut(s)	75, 84, 92, 267, 374, 453, 480
TatI	WGTACW	2 cut(s)	318, 324
TfiI	GAWTC	1 cut(s)	205
TscAI	CASTG	2 cut(s)	171, 237
TseI	GCWGC	1 cut(s)	235
TspGWI	ACGGA	1 cut(s)	197
TspRI	CASTG	2 cut(s)	171, 237
VpaK11BI	GGWCC	1 cut(s)	121
XbaI	TCTAGA	1 cut(s)	64
XceI	RCATGY	1 cut(s)	73
XspI	CTAG	2 cut(s)	65, 502

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.