Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000857

Physical Location & Seq

Genomic Coordinates Forward (+)

12370598 .. 12374090

Gene Structure 3493 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g18790.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGAGAGTTGAGAGCCTCAGTTCTGGTTTGGGTTCAGAGTTCAGTAGAGTTTTTCAGAGCAGCTTTGCAGTTTTTGGGACTAAGAAGCTTGATGGGTCTAGGCCATCTGCAACGTTCAGGTTTAGGCGAGTACCCATAAGCTGTGCTGTTCGTTTTCGACCATGCATTGATATACACAAGGGGAAAGTGAAGCAGATTGTTGGGTCGACGCTTTCGGATTTGAAGGAAGAAGGGCAAGCTCTTGTGACCAATTTCGAGTCGGATAAGTCGGCTGGGGAGTATGCAAGGATGTATAAGGAAGATGGGCTTACAGGTGGCCATGTGATAATGCTGGGAGCTGACCCTTTGAGTAGAGCTGCAGCTATTGAAGCTCTGCGTGTATATCCTGGTGGTTTGCAAGTAGGAGGTGGGATCACTTCAGATAATTCTTTGCAGTACATAGAAGAAGGGGCTAGCCACGTCATTGTCACCTCTTATGTATTTAATAATGGGAAAATGGACCTTGAAAGGCTAAAAGATCTTGTTCATATTGTTGGAAAAGAAAGGCTTGTTTTAGACCTTAGCTGCAGAAAGAGGGAAGGTAAATATGCAATTGTAACAGATAGATGGCAGAAGTTCAGTGACGTTTATCTTGACAAGGAAATATTAGACTTCCTTGCCAACTATGCAGATGAGTTTCTGGTACATGGTGTCGATGTTGAAGGGAAAAAACTGGGGATTGATGAAGAGCTTGTGGAGTTGCTTGGCAAGAATTCTCCGATCCCTGTAACTTATGCTGGTGGAGTCACAGTAATGGCTGATTTAGAGAGGATAAAAGTGGCAGGGCTGGGACATGTGGATGTTACTGTTGGCAGTGCTTTGGATGTTTTCGGCGGCAACTTGCCGTACAAAGAAGTTGTTGCTTGGCATGCTCAGCAGAAAGCATCGACTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0000162 GO:0003674 GO:0003824 GO:0003949 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

His_biosynth

Protein Analysis

312

Amino Acids

33.98

Weight (kDa)

6.2

Isoelectric Point (pI)

35.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000857)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36230
fragaria_vesca	FvH4_6g18790 FvH4_6g18790 FvH4_6g18790 FvH4_6g18790 FvH4_6g18790 FvH4_6g18790
malus_domestica	MD12G1036500.v1.1 MD14G1023300.v1.1
prunus_persica	Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1
pyrus_communis	pycom12g02400 pycom14g02220 pycom14g02230
rosa_chinensis	RchiOBHm_Chr1g0324901 RchiOBHm_Chr1g0350151 RchiOBHm_Chr3g0473801 RchiOBHm_Chr4g0393091 RchiOBHm_Chr4g0409701 RchiOBHm_Chr5g0027171
rosa_laevigata	RLG00000014193 RLG00000023983 RLG00000035737
rosa_multiflora	Rmu_sc0001207.1_g000028 Rmu_sc0002986.1_g000013 Rmu_sc0007035.1_g000005 Rmu_sc0016122.1_g000001 Rmu_sc0037919.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029230 Rroxscaffold_1G00029310 Rroxscaffold_2G00114250 Rroxscaffold_3G00260930 Rroxscaffold_3G00260940 Rroxscaffold_4G00311820 Rroxscaffold_4G00332560 Rroxscaffold_5G00338520 Rroxscaffold_5G00355640 Rroxscaffold_6G00407790
rosa_rugosa	Rorug01G0107500 Rorug02G0045900 Rorug03G0135600 Rorug06G0225600 Rorug07G0319400 Rorug07G0330900
rosa_samantha	Rh1AG080400 Rh1AG119900 Rh1AG120000 Rh1AG233100 Rh1CG115000 Rh1CG217700 Rh2BG241500 Rh2BG353000 Rh2DG556200 Rh3AG186100 Rh3AG202300 Rh3BG214400 Rh3CG211200 Rh3DG210400 Rh3DG227900 Rh5AG343700 Rh5DG191000
rosa_wichuraiana	Rw1G018100 Rw3G017000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	206
AciI	CCGC	1 cut(s)	873
AclI	AACGTT	1 cut(s)	113
AclWI	GGATC	2 cut(s)	419, 754
AcoI	YGGCCR	1 cut(s)	316
AcsI	RAATTY	1 cut(s)	751
AcuI	CTGAAG	1 cut(s)	402
AfaI	GTAC	4 cut(s)	132, 437, 684, 887
AflIII	ACRYGT	1 cut(s)	832
AgsI	TTSAA	4 cut(s)	223, 368, 506, 701
AjiI	CACGTC	1 cut(s)	460
AjnI	CCWGG	1 cut(s)	385
AlwI	GGATC	2 cut(s)	419, 754
AoxI	GGCC	2 cut(s)	101, 316
ApeKI	GCWGC	4 cut(s)	60, 356, 359, 564
ApoI	RAATTY	1 cut(s)	751
AspS9I	GGNCC	1 cut(s)	499
AsuHPI	GGTGA	1 cut(s)	460
AsuNHI	GCTAGC	1 cut(s)	452
AvaII	GGWCC	1 cut(s)	499
BalI	TGGCCA	1 cut(s)	318
BbvI	GCAGC	4 cut(s)	72, 343, 371, 551
BccI	CCATC	4 cut(s)	86, 112, 296, 600
BceAI	ACGGC	1 cut(s)	868
BciT130I	CCWGG	1 cut(s)	387
BfaI	CTAG	2 cut(s)	99, 453
BfmI	CTRYAG	2 cut(s)	357, 565
BglII	AGATCT	1 cut(s)	517
BisI	GCNGC	5 cut(s)	61, 357, 360, 565, 874
BlpI	GCTNAGC	1 cut(s)	912
BlsI	GCNGC	5 cut(s)	62, 358, 361, 566, 875
Bme1390I	CCNGG	1 cut(s)	387
Bme18I	GGWCC	1 cut(s)	499
BmgBI	CACGTC	1 cut(s)	460
BmgT120I	GGNCC	1 cut(s)	499
BmrFI	CCNGG	1 cut(s)	387
BmrI	ACTGGG	1 cut(s)	722
BmsI	GCATC	1 cut(s)	932
BmtI	GCTAGC	1 cut(s)	456
BmuI	ACTGGG	1 cut(s)	722
Bpu10I	CCTNAGC	1 cut(s)	560
Bpu1102I	GCTNAGC	1 cut(s)	912
BsaXI	ACNNNNNCTCC	2 cut(s)	774, 804
Bse1I	ACTGG	1 cut(s)	717
BseBI	CCWGG	1 cut(s)	387
BseGI	GGATG	3 cut(s)	294, 844, 868
BseMII	CTCAG	2 cut(s)	31, 926
BseNI	ACTGG	1 cut(s)	717
BseXI	GCAGC	4 cut(s)	72, 343, 371, 551
BseYI	CCCAGC	3 cut(s)	272, 331, 826
BshFI	GGCC	2 cut(s)	103, 318
BslFI	GGGAC	2 cut(s)	91, 843
BsmFI	GGGAC	2 cut(s)	91, 843
BsnI	GGCC	2 cut(s)	103, 318
Bsp143I	GATC	3 cut(s)	411, 517, 759
Bsp1720I	GCTNAGC	1 cut(s)	912
BspACI	CCGC	1 cut(s)	873
BspANI	GGCC	2 cut(s)	103, 318
BspCNI	CTCAG	2 cut(s)	30, 925
BspMAI	CTGCAG	2 cut(s)	361, 569
BspOI	GCTAGC	1 cut(s)	456
BspPI	GGATC	2 cut(s)	419, 754
BspQI	GCTCTTC	1 cut(s)	720
BsrI	ACTGG	1 cut(s)	717
BssMI	GATC	3 cut(s)	411, 517, 759
Bst2UI	CCWGG	1 cut(s)	387
Bst4CI	ACNGT	3 cut(s)	790, 847, 931
Bst6I	CTCTTC	1 cut(s)	720
BstC8I	GCNNGC	3 cut(s)	237, 454, 909
BstDEI	CTNAG	4 cut(s)	17, 81, 560, 912
BstF5I	GGATG	3 cut(s)	294, 844, 868
BstKTI	GATC	3 cut(s)	414, 520, 762
BstMBI	GATC	3 cut(s)	411, 517, 759
BstMWI	GCNNNNNNNGC	4 cut(s)	368, 665, 908, 913
BstNI	CCWGG	1 cut(s)	387
BstNSI	RCATGY	2 cut(s)	836, 911
BstSCI	CCNGG	1 cut(s)	385
BstSFI	CTRYAG	2 cut(s)	357, 565
BstV1I	GCAGC	4 cut(s)	72, 343, 371, 551
BstX2I	RGATCY	1 cut(s)	517
BstYI	RGATCY	1 cut(s)	517
BsuRI	GGCC	2 cut(s)	103, 318
BtrI	CACGTC	1 cut(s)	460
BtsCI	GGATG	3 cut(s)	294, 844, 868
BtsI	GCAGTG	1 cut(s)	859
BtsIMutI	CAGTG	2 cut(s)	625, 859
Cac8I	GCNNGC	3 cut(s)	237, 454, 909
Cfr13I	GGNCC	1 cut(s)	499
CseI	GACGC	1 cut(s)	217
Csp6I	GTAC	4 cut(s)	131, 436, 683, 886
CviAII	CATG	5 cut(s)	162, 320, 686, 833, 908
CviQI	GTAC	4 cut(s)	131, 436, 683, 886
DdeI	CTNAG	4 cut(s)	17, 81, 560, 912
DpnI	GATC	3 cut(s)	413, 519, 761
DpnII	GATC	3 cut(s)	411, 517, 759
EaeI	YGGCCR	1 cut(s)	316
Eam1104I	CTCTTC	1 cut(s)	720
EarI	CTCTTC	1 cut(s)	720
Eco47I	GGWCC	1 cut(s)	499
Eco57I	CTGAAG	1 cut(s)	402
EcoRI	GAATTC	1 cut(s)	751
EcoRII	CCWGG	1 cut(s)	385
EcoT22I	ATGCAT	1 cut(s)	167
FaeI	CATG	5 cut(s)	165, 323, 689, 836, 911
FalI	AAGNNNNNCTT	4 cut(s)	291, 323, 531, 563
FaqI	GGGAC	2 cut(s)	91, 843
FatI	CATG	5 cut(s)	161, 319, 685, 832, 907
FblI	GTMKAC	1 cut(s)	206
Fnu4HI	GCNGC	5 cut(s)	61, 357, 360, 565, 874
FokI	GGATG	3 cut(s)	301, 851, 875
Fsp4HI	GCNGC	5 cut(s)	61, 357, 360, 565, 874
FspBI	CTAG	2 cut(s)	99, 453
GluI	GCNGC	5 cut(s)	61, 357, 360, 565, 874
GsaI	CCCAGC	3 cut(s)	276, 335, 830
HaeIII	GGCC	2 cut(s)	103, 318
HgaI	GACGC	1 cut(s)	217
Hin1II	CATG	5 cut(s)	165, 323, 689, 836, 911
HincII	GTYRAC	1 cut(s)	207
HindII	GTYRAC	1 cut(s)	207
HindIII	AAGCTT	1 cut(s)	86
HinfI	GANTC	2 cut(s)	257, 783
HphI	GGTGA	1 cut(s)	460
Hpy166II	GTNNAC	1 cut(s)	207
Hpy188I	TCNGA	6 cut(s)	37, 57, 217, 262, 421, 759
Hpy188III	TCNNGA	1 cut(s)	632
Hpy8I	GTNNAC	1 cut(s)	207
Hpy99I	CGWCG	1 cut(s)	211
HpyAV	CCTTC	5 cut(s)	217, 224, 440, 572, 695
HpyCH4III	ACNGT	3 cut(s)	790, 847, 931
HpyCH4IV	ACGT	3 cut(s)	113, 459, 624
HpyF10VI	GCNNNNNNNGC	4 cut(s)	368, 665, 908, 913
HpyF3I	CTNAG	4 cut(s)	17, 81, 560, 912
HpySE526I	ACGT	3 cut(s)	113, 459, 624
Hsp92II	CATG	5 cut(s)	165, 323, 689, 836, 911
Kzo9I	GATC	3 cut(s)	411, 517, 759
LguI	GCTCTTC	1 cut(s)	720
LmnI	GCTCC	1 cut(s)	335
Lsp1109I	GCAGC	4 cut(s)	72, 343, 371, 551
LweI	GCATC	1 cut(s)	932
MaeI	CTAG	2 cut(s)	99, 453
MaeII	ACGT	3 cut(s)	113, 459, 624
MaeIII	GTNAC	7 cut(s)	244, 466, 595, 620, 766, 784, 841
MalI	GATC	3 cut(s)	413, 519, 761
MboI	GATC	3 cut(s)	411, 517, 759
MboII	GAAGA	4 cut(s)	239, 311, 455, 737
MfeI	CAATTG	1 cut(s)	591
MflI	RGATCY	1 cut(s)	517
MlsI	TGGCCA	1 cut(s)	318
MluCI	AATT	4 cut(s)	250, 424, 591, 751
MluNI	TGGCCA	1 cut(s)	318
MlyI	GAGTC	2 cut(s)	266, 792
MmeI	TCCRAC	2 cut(s)	240, 514
MnlI	CCTC	5 cut(s)	26, 398, 481, 567, 801
Mox20I	TGGCCA	1 cut(s)	318
Mph1103I	ATGCAT	1 cut(s)	167
MscI	TGGCCA	1 cut(s)	318
MseI	TTAA	1 cut(s)	483
MslI	CAYNNNNRTG	2 cut(s)	791, 837
Msp20I	TGGCCA	1 cut(s)	318
MspR9I	CCNGG	1 cut(s)	387
MunI	CAATTG	1 cut(s)	591
MvaI	CCWGG	1 cut(s)	387
MwoI	GCNNNNNNNGC	4 cut(s)	368, 665, 908, 913
NdeII	GATC	3 cut(s)	411, 517, 759
NheI	GCTAGC	1 cut(s)	452
NlaIII	CATG	5 cut(s)	165, 323, 689, 836, 911
NmuCI	GTSAC	4 cut(s)	244, 466, 620, 784
NsiI	ATGCAT	1 cut(s)	167
NspI	RCATGY	2 cut(s)	836, 911
PaeI	GCATGC	1 cut(s)	911
PciI	ACATGT	1 cut(s)	832
PciSI	GCTCTTC	1 cut(s)	720
PkrI	GCNGC	5 cut(s)	62, 358, 361, 566, 875
PleI	GAGTC	2 cut(s)	265, 791
PpsI	GAGTC	2 cut(s)	265, 791
PscI	ACATGT	1 cut(s)	832
Psp1406I	AACGTT	1 cut(s)	113
Psp6I	CCWGG	1 cut(s)	385
PspFI	CCCAGC	3 cut(s)	272, 331, 826
PspGI	CCWGG	1 cut(s)	385
PspPI	GGNCC	1 cut(s)	499
PstI	CTGCAG	2 cut(s)	361, 569
PsuI	RGATCY	1 cut(s)	517
RsaI	GTAC	4 cut(s)	132, 437, 684, 887
RsaNI	GTAC	4 cut(s)	131, 436, 683, 886
RseI	CAYNNNNRTG	2 cut(s)	791, 837
SalI	GTCGAC	1 cut(s)	205
SapI	GCTCTTC	1 cut(s)	720
SaqAI	TTAA	1 cut(s)	483
SatI	GCNGC	5 cut(s)	61, 357, 360, 565, 874
Sau3AI	GATC	3 cut(s)	411, 517, 759
Sau96I	GGNCC	1 cut(s)	499
SchI	GAGTC	2 cut(s)	266, 792
ScrFI	CCNGG	1 cut(s)	387
SfaNI	GCATC	1 cut(s)	932
SfcI	CTRYAG	2 cut(s)	357, 565
SinI	GGWCC	1 cut(s)	499
SmiMI	CAYNNNNRTG	2 cut(s)	791, 837
SphI	GCATGC	1 cut(s)	911
Sse9I	AATT	4 cut(s)	250, 424, 591, 751
SsiI	CCGC	1 cut(s)	873
SspI	AATATT	1 cut(s)	645
SspMI	CTAG	2 cut(s)	99, 453
StyD4I	CCNGG	1 cut(s)	385
TaaI	ACNGT	3 cut(s)	790, 847, 931
TaiI	ACGT	3 cut(s)	116, 462, 627
TaqI	TCGA	5 cut(s)	157, 206, 255, 693, 926
TasI	AATT	4 cut(s)	250, 424, 591, 751
TatI	WGTACW	1 cut(s)	435
TauI	GCSGC	1 cut(s)	876
Tru1I	TTAA	1 cut(s)	483
Tru9I	TTAA	1 cut(s)	483
TscAI	CASTG	2 cut(s)	625, 859
TseFI	GTSAC	4 cut(s)	244, 466, 620, 784
TseI	GCWGC	4 cut(s)	60, 356, 359, 564
Tsp45I	GTSAC	4 cut(s)	244, 466, 620, 784
TspDTI	ATGAA	2 cut(s)	515, 738
TspRI	CASTG	2 cut(s)	625, 859
VpaK11BI	GGWCC	1 cut(s)	499
XapI	RAATTY	1 cut(s)	751
XceI	RCATGY	2 cut(s)	836, 911
XmiI	GTMKAC	1 cut(s)	206
XspI	CTAG	2 cut(s)	99, 453
Zsp2I	ATGCAT	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.