Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0000857

Physical Location & Seq

Genomic Coordinates Reverse (-)

46806870 .. 46816767

Gene Structure 9898 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG217700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGTGGCGAATTTCAACGACGTCGGAACCAAGCACGACCTCCCAATGGGCCTGACGGAGAACGACTCTGCCACGTTTCTCTCCACCGGCAACCCCTGCCTCGATCTCTTCTTCCACGTCATCCCAAACACTCCAGGCGACTACCTCACCTCACTAGCAGAAGAGGCCTCAAACATTGCTTCCTTATATAGTGATGTTCTACAGGTAGGAGGTGGGATCAATTCAGATAATTCTTTGCAATACATAGAAGAAGGGGCTACCCACGTCATTGTCACTTCTTATGTATTTAATAATGGGCAAAACCTTGAAAGGCTTAAAGATCTTGTTCGTGTTGTTGGAAAAGAAAGGCTTGTTTTAGACCTTAGCTGTAGAAAGAGGGAAGGTAAATATGCAATTGTCACAGATAGATGGCAAAAGTTCAGTGACGTGTATCTTGACAAGGAAATATTAGACTTCCTTGCCAAGTATGCAGACGAGTTTCTGGTACATGGTGTCGATGTGGAAGGGAAAAACACCAGCCTGGGCTTGGTGAAACGGTACTGGATCTTGGCTTGTCGAGGCAGACAAGCTCTGTGCGGTCGTGGTGGTTCGGCAAGGTTGGTCGATTCCAACCTTGGTGGCGGCAGCGTTTTGATTTATAGGGCTCGATTTGATCGGAGCACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0000162 GO:0003674 GO:0003824 GO:0003949 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

His_biosynth

Protein Analysis

221

Amino Acids

24.45

Weight (kDa)

5.6

Isoelectric Point (pI)

28.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF2828	PF11443	19 - 56	1.9e-06	Domain of unknown function (DUF2828)
His_biosynth	PF00977	58 - 171	5.1e-11	Histidine biosynthesis protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000857)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36230
fragaria_vesca	FvH4_6g18790 FvH4_6g18790 FvH4_6g18790 FvH4_6g18790 FvH4_6g18790 FvH4_6g18790
malus_domestica	MD12G1036500.v1.1 MD14G1023300.v1.1
prunus_persica	Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1
pyrus_communis	pycom12g02400 pycom14g02220 pycom14g02230
rosa_chinensis	RchiOBHm_Chr1g0324901 RchiOBHm_Chr1g0350151 RchiOBHm_Chr3g0473801 RchiOBHm_Chr4g0393091 RchiOBHm_Chr4g0409701 RchiOBHm_Chr5g0027171
rosa_laevigata	RLG00000014193 RLG00000023983 RLG00000035737
rosa_multiflora	Rmu_sc0001207.1_g000028 Rmu_sc0002986.1_g000013 Rmu_sc0007035.1_g000005 Rmu_sc0016122.1_g000001 Rmu_sc0037919.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029230 Rroxscaffold_1G00029310 Rroxscaffold_2G00114250 Rroxscaffold_3G00260930 Rroxscaffold_3G00260940 Rroxscaffold_4G00311820 Rroxscaffold_4G00332560 Rroxscaffold_5G00338520 Rroxscaffold_5G00355640 Rroxscaffold_6G00407790
rosa_rugosa	Rorug01G0107500 Rorug02G0045900 Rorug03G0135600 Rorug06G0225600 Rorug07G0319400 Rorug07G0330900
rosa_samantha	Rh1AG080400 Rh1AG119900 Rh1AG120000 Rh1AG233100 Rh1CG115000 Rh1CG217700 Rh2BG241500 Rh2BG353000 Rh2DG556200 Rh3AG186100 Rh3AG202300 Rh3BG214400 Rh3CG211200 Rh3DG210400 Rh3DG227900 Rh5AG343700 Rh5DG191000
rosa_wichuraiana	Rw1G018100 Rw3G017000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	24
AciI	CCGC	2 cut(s)	576, 621
AclWI	GGATC	2 cut(s)	224, 551
AcsI	RAATTY	1 cut(s)	10
AcvI	CACGTG	1 cut(s)	663
AcyI	GRCGYC	1 cut(s)	21
AfaI	GTAC	2 cut(s)	486, 539
AfiI	CCNNNNNNNGG	2 cut(s)	46, 526
AflIII	ACRYGT	1 cut(s)	426
AgsI	TTSAA	2 cut(s)	16, 308
AjiI	CACGTC	3 cut(s)	118, 265, 427
AjnI	CCWGG	2 cut(s)	133, 519
AluBI	AGCT	2 cut(s)	366, 569
AluI	AGCT	2 cut(s)	366, 569
Alw21I	GWGCWC	1 cut(s)	662
AlwI	GGATC	2 cut(s)	224, 551
AoxI	GGCC	2 cut(s)	49, 165
ApeKI	GCWGC	1 cut(s)	624
ApoI	RAATTY	1 cut(s)	10
AspS9I	GGNCC	1 cut(s)	49
AsuHPI	GGTGA	2 cut(s)	139, 541
BanII	GRGCYC	1 cut(s)	646
BbrPI	CACGTG	1 cut(s)	663
Bbv12I	GWGCWC	1 cut(s)	662
BbvI	GCAGC	1 cut(s)	636
BccI	CCATC	1 cut(s)	402
BciT130I	CCWGG	2 cut(s)	135, 521
BfaI	CTAG	1 cut(s)	155
BfmI	CTRYAG	2 cut(s)	200, 367
BglII	AGATCT	1 cut(s)	319
BisI	GCNGC	2 cut(s)	622, 625
BlsI	GCNGC	2 cut(s)	623, 626
Bme1390I	CCNGG	2 cut(s)	135, 521
BmgBI	CACGTC	3 cut(s)	118, 265, 427
BmgT120I	GGNCC	1 cut(s)	49
BmiI	GGNNCC	1 cut(s)	28
BmrFI	CCNGG	2 cut(s)	135, 521
BplI	GAGNNNNNCTC	2 cut(s)	50, 82
BpmI	CTGGAG	1 cut(s)	117
Bpu10I	CCTNAGC	1 cut(s)	362
BsaAI	YACGTR	1 cut(s)	663
BsaHI	GRCGYC	1 cut(s)	21
BsaJI	CCNNGG	2 cut(s)	520, 613
Bsc4I	CCNNNNNNNGG	2 cut(s)	46, 526
Bse118I	RCCGGY	1 cut(s)	86
Bse1I	ACTGG	1 cut(s)	545
Bse3DI	GCAATG	1 cut(s)	174
BseBI	CCWGG	2 cut(s)	135, 521
BseDI	CCNNGG	2 cut(s)	520, 613
BseGI	GGATG	1 cut(s)	120
BseLI	CCNNNNNNNGG	2 cut(s)	46, 526
BseMI	GCAATG	1 cut(s)	174
BseNI	ACTGG	1 cut(s)	545
BseXI	GCAGC	1 cut(s)	636
Bsh1285I	CGRYCG	1 cut(s)	580
BshFI	GGCC	2 cut(s)	51, 167
BsiEI	CGRYCG	1 cut(s)	580
BsiHKAI	GWGCWC	1 cut(s)	662
BsiSI	CCGG	1 cut(s)	87
BslI	CCNNNNNNNGG	2 cut(s)	46, 526
BsnI	GGCC	2 cut(s)	51, 167
Bsp1286I	GDGCHC	2 cut(s)	646, 662
Bsp143I	GATC	5 cut(s)	103, 216, 319, 543, 652
BspACI	CCGC	2 cut(s)	576, 621
BspANI	GGCC	2 cut(s)	51, 167
BspLI	GGNNCC	1 cut(s)	28
BspPI	GGATC	2 cut(s)	224, 551
BsrDI	GCAATG	1 cut(s)	174
BsrFI	RCCGGY	1 cut(s)	86
BsrI	ACTGG	1 cut(s)	545
BssAI	RCCGGY	1 cut(s)	86
BssECI	CCNNGG	2 cut(s)	520, 613
BssMI	GATC	5 cut(s)	103, 216, 319, 543, 652
BssNI	GRCGYC	1 cut(s)	21
BssT1I	CCWWGG	1 cut(s)	613
Bst2UI	CCWGG	2 cut(s)	135, 521
Bst4CI	ACNGT	1 cut(s)	537
Bst6I	CTCTTC	2 cut(s)	113, 156
BstACI	GRCGYC	1 cut(s)	21
BstAPI	GCANNNNNTGC	1 cut(s)	96
BstBAI	YACGTR	1 cut(s)	663
BstDEI	CTNAG	1 cut(s)	362
BstF5I	GGATG	1 cut(s)	120
BstKTI	GATC	5 cut(s)	106, 219, 322, 546, 655
BstMBI	GATC	5 cut(s)	103, 216, 319, 543, 652
BstMCI	CGRYCG	1 cut(s)	580
BstMWI	GCNNNNNNNGC	3 cut(s)	96, 164, 467
BstNI	CCWGG	2 cut(s)	135, 521
BstSCI	CCNGG	2 cut(s)	133, 519
BstSFI	CTRYAG	2 cut(s)	200, 367
BstV1I	GCAGC	1 cut(s)	636
BstX2I	RGATCY	2 cut(s)	319, 543
BstYI	RGATCY	2 cut(s)	319, 543
BsuRI	GGCC	2 cut(s)	51, 167
BtrI	CACGTC	3 cut(s)	118, 265, 427
BtsCI	GGATG	1 cut(s)	120
BtsIMutI	CAGTG	1 cut(s)	427
Cfr10I	RCCGGY	1 cut(s)	86
Cfr13I	GGNCC	1 cut(s)	49
Csp6I	GTAC	2 cut(s)	485, 538
CspCI	CAANNNNNGTGG	2 cut(s)	598, 633
CviAII	CATG	1 cut(s)	488
CviQI	GTAC	2 cut(s)	485, 538
DdeI	CTNAG	1 cut(s)	362
DpnI	GATC	5 cut(s)	105, 218, 321, 545, 654
DpnII	GATC	5 cut(s)	103, 216, 319, 543, 652
Eam1104I	CTCTTC	2 cut(s)	113, 156
EarI	CTCTTC	2 cut(s)	113, 156
Eco130I	CCWWGG	1 cut(s)	613
Eco147I	AGGCCT	1 cut(s)	167
Eco24I	GRGCYC	1 cut(s)	646
Eco72I	CACGTG	1 cut(s)	663
EcoRII	CCWGG	2 cut(s)	133, 519
EcoT14I	CCWWGG	1 cut(s)	613
EcoT38I	GRGCYC	1 cut(s)	646
ErhI	CCWWGG	1 cut(s)	613
FaeI	CATG	1 cut(s)	491
FaiI	YATR	8 cut(s)	187, 189, 245, 282, 390, 468, 489, 639
FalI	AAGNNNNNCTT	2 cut(s)	333, 365
FatI	CATG	1 cut(s)	487
Fnu4HI	GCNGC	2 cut(s)	622, 625
FokI	GGATG	1 cut(s)	107
FriOI	GRGCYC	1 cut(s)	646
Fsp4HI	GCNGC	2 cut(s)	622, 625
FspBI	CTAG	1 cut(s)	155
GluI	GCNGC	2 cut(s)	622, 625
GsuI	CTGGAG	1 cut(s)	117
HaeIII	GGCC	2 cut(s)	51, 167
HapII	CCGG	1 cut(s)	87
Hin1I	GRCGYC	1 cut(s)	21
Hin1II	CATG	1 cut(s)	491
HinfI	GANTC	2 cut(s)	65, 605
HpaII	CCGG	1 cut(s)	87
HphI	GGTGA	2 cut(s)	139, 541
Hpy188I	TCNGA	3 cut(s)	26, 226, 657
Hpy188III	TCNNGA	1 cut(s)	434
Hpy99I	CGWCG	2 cut(s)	23, 26
HpyAV	CCTTC	3 cut(s)	245, 374, 497
HpyCH4III	ACNGT	1 cut(s)	537
HpyCH4IV	ACGT	6 cut(s)	21, 74, 117, 264, 426, 662
HpyCH4V	TGCA	3 cut(s)	238, 392, 470
HpyF10VI	GCNNNNNNNGC	3 cut(s)	96, 164, 467
HpyF3I	CTNAG	1 cut(s)	362
HpySE526I	ACGT	6 cut(s)	21, 74, 117, 264, 426, 662
Hsp92I	GRCGYC	1 cut(s)	21
Hsp92II	CATG	1 cut(s)	491
Kzo9I	GATC	5 cut(s)	103, 216, 319, 543, 652
LmnI	GCTCC	1 cut(s)	657
Lsp1109I	GCAGC	1 cut(s)	636
MaeI	CTAG	1 cut(s)	155
MaeII	ACGT	6 cut(s)	21, 74, 117, 264, 426, 662
MaeIII	GTNAC	3 cut(s)	271, 397, 422
MalI	GATC	5 cut(s)	105, 218, 321, 545, 654
MboI	GATC	5 cut(s)	103, 216, 319, 543, 652
MboII	GAAGA	4 cut(s)	100, 103, 173, 260
MfeI	CAATTG	1 cut(s)	393
MflI	RGATCY	2 cut(s)	319, 543
MhlI	GDGCHC	2 cut(s)	646, 662
MluCI	AATT	4 cut(s)	10, 220, 229, 393
MlyI	GAGTC	1 cut(s)	59
MmeI	TCCRAC	3 cut(s)	4, 316, 633
MnlI	CCTC	9 cut(s)	50, 110, 155, 157, 160, 178, 203, 369, 551
MseI	TTAA	2 cut(s)	288, 315
MspI	CCGG	1 cut(s)	87
MspR9I	CCNGG	2 cut(s)	135, 521
MunI	CAATTG	1 cut(s)	393
MvaI	CCWGG	2 cut(s)	135, 521
MwoI	GCNNNNNNNGC	3 cut(s)	96, 164, 467
NdeII	GATC	5 cut(s)	103, 216, 319, 543, 652
NlaIII	CATG	1 cut(s)	491
NlaIV	GGNNCC	1 cut(s)	28
NmuCI	GTSAC	3 cut(s)	271, 397, 422
PceI	AGGCCT	1 cut(s)	167
PfeI	GAWTC	1 cut(s)	605
PkrI	GCNGC	2 cut(s)	623, 626
PleI	GAGTC	1 cut(s)	59
PmaCI	CACGTG	1 cut(s)	663
PmlI	CACGTG	1 cut(s)	663
PpsI	GAGTC	1 cut(s)	59
Ppu21I	YACGTR	1 cut(s)	663
Psp6I	CCWGG	2 cut(s)	133, 519
PspCI	CACGTG	1 cut(s)	663
PspGI	CCWGG	2 cut(s)	133, 519
PspN4I	GGNNCC	1 cut(s)	28
PspPI	GGNCC	1 cut(s)	49
PsuI	RGATCY	2 cut(s)	319, 543
RsaI	GTAC	2 cut(s)	486, 539
RsaNI	GTAC	2 cut(s)	485, 538
SaqAI	TTAA	2 cut(s)	288, 315
SatI	GCNGC	2 cut(s)	622, 625
Sau3AI	GATC	5 cut(s)	103, 216, 319, 543, 652
Sau96I	GGNCC	1 cut(s)	49
SchI	GAGTC	1 cut(s)	59
ScrFI	CCNGG	2 cut(s)	135, 521
SduI	GDGCHC	2 cut(s)	646, 662
SfcI	CTRYAG	2 cut(s)	200, 367
Sse9I	AATT	4 cut(s)	10, 220, 229, 393
SseBI	AGGCCT	1 cut(s)	167
SsiI	CCGC	2 cut(s)	576, 621
SspI	AATATT	1 cut(s)	447
SspMI	CTAG	1 cut(s)	155
StuI	AGGCCT	1 cut(s)	167
StyD4I	CCNGG	2 cut(s)	133, 519
StyI	CCWWGG	1 cut(s)	613
TaaI	ACNGT	1 cut(s)	537
TaiI	ACGT	6 cut(s)	24, 77, 120, 267, 429, 665
TaqI	TCGA	5 cut(s)	102, 495, 556, 603, 646
TasI	AATT	4 cut(s)	10, 220, 229, 393
TauI	GCSGC	1 cut(s)	624
TfiI	GAWTC	1 cut(s)	605
Tru1I	TTAA	2 cut(s)	288, 315
Tru9I	TTAA	2 cut(s)	288, 315
TscAI	CASTG	1 cut(s)	427
TseFI	GTSAC	3 cut(s)	271, 397, 422
TseI	GCWGC	1 cut(s)	624
Tsp45I	GTSAC	3 cut(s)	271, 397, 422
TspGWI	ACGGA	1 cut(s)	71
TspRI	CASTG	1 cut(s)	427
XapI	RAATTY	1 cut(s)	10
XcmI	CCANNNNNNNNNTGG	1 cut(s)	523
XspI	CTAG	1 cut(s)	155
ZraI	GACGTC	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.