Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0000857

Physical Location & Seq

Genomic Coordinates Forward (+)

1708523 .. 1709797

Gene Structure 1275 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g02220.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGCCGCTTTCTCTTCGGATGTCAGTACACTTCACAGACCTCCGAGCTCTTCAATTTTCGGCGCAGCAAACCGTAAAAGTTTCACTGCCAGACCCTTCCATGGCGTCCAGTTTCACCCGGCGGCTTTCGATCCGCTGCGCCGTTCGCTTCCGGCGTAGCATTGACATACACAAGGGGAAAGTGATTCAAATTGTTGGGTCTACCCTTTCGGATTTGAAGGATGATGGGTCGGTTCTTGTTACCAATTTTGTGTCTGATAAGTCTGCAGCGGAGTATGCAAAGATGTATAAAGAAGATGGGCTTACAGGTGGTCATGTTATCATGCTTGGAGCTGACCCTTTGAGTAGAGTTGCAGCCATTGAAGCTTTGCATGCCTATCCTGGTGGTTCGCAAGTAGGAGGTGGGATCAATTCAGAAAATTCTTTGAATTACATAGAAGAAGGGGCTAGCCATATCATTGTCACTTCCTATGTATTTAACAATGCACAAATGGACCTTGAAAGGCTTAAAGATCTTGTTCTTGTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0000162 GO:0003674 GO:0003824 GO:0003949 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

His_biosynth

Protein Analysis

177

Amino Acids

19.14

Weight (kDa)

6.97

Isoelectric Point (pI)

44.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000857)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36230
fragaria_vesca	FvH4_6g18790 FvH4_6g18790 FvH4_6g18790 FvH4_6g18790 FvH4_6g18790 FvH4_6g18790
malus_domestica	MD12G1036500.v1.1 MD14G1023300.v1.1
prunus_persica	Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1
pyrus_communis	pycom12g02400 pycom14g02220 pycom14g02230
rosa_chinensis	RchiOBHm_Chr1g0324901 RchiOBHm_Chr1g0350151 RchiOBHm_Chr3g0473801 RchiOBHm_Chr4g0393091 RchiOBHm_Chr4g0409701 RchiOBHm_Chr5g0027171
rosa_laevigata	RLG00000014193 RLG00000023983 RLG00000035737
rosa_multiflora	Rmu_sc0001207.1_g000028 Rmu_sc0002986.1_g000013 Rmu_sc0007035.1_g000005 Rmu_sc0016122.1_g000001 Rmu_sc0037919.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029230 Rroxscaffold_1G00029310 Rroxscaffold_2G00114250 Rroxscaffold_3G00260930 Rroxscaffold_3G00260940 Rroxscaffold_4G00311820 Rroxscaffold_4G00332560 Rroxscaffold_5G00338520 Rroxscaffold_5G00355640 Rroxscaffold_6G00407790
rosa_rugosa	Rorug01G0107500 Rorug02G0045900 Rorug03G0135600 Rorug06G0225600 Rorug07G0319400 Rorug07G0330900
rosa_samantha	Rh1AG080400 Rh1AG119900 Rh1AG120000 Rh1AG233100 Rh1CG115000 Rh1CG217700 Rh2BG241500 Rh2BG353000 Rh2DG556200 Rh3AG186100 Rh3AG202300 Rh3BG214400 Rh3CG211200 Rh3DG210400 Rh3DG227900 Rh5AG343700 Rh5DG191000
rosa_wichuraiana	Rw1G018100 Rw3G017000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	200
AciI	CCGC	4 cut(s)	5, 121, 133, 269
AclWI	GGATC	2 cut(s)	124, 413
AcsI	RAATTY	1 cut(s)	418
AcyI	GRCGYC	1 cut(s)	104
AfaI	GTAC	1 cut(s)	27
AfiI	CCNNNNNNNGG	1 cut(s)	100
AgsI	TTSAA	6 cut(s)	53, 188, 217, 362, 427, 500
AjnI	CCWGG	1 cut(s)	379
AluBI	AGCT	3 cut(s)	47, 332, 365
AluI	AGCT	3 cut(s)	47, 332, 365
Alw21I	GWGCWC	1 cut(s)	49
AlwI	GGATC	2 cut(s)	124, 413
ApeKI	GCWGC	4 cut(s)	64, 135, 266, 353
ApoI	RAATTY	1 cut(s)	418
AspLEI	GCGC	2 cut(s)	64, 140
AspS9I	GGNCC	1 cut(s)	493
AsuC2I	CCSGG	1 cut(s)	118
AsuHPI	GGTGA	1 cut(s)	106
AsuNHI	GCTAGC	1 cut(s)	446
AvaII	GGWCC	1 cut(s)	493
BanII	GRGCYC	1 cut(s)	49
Bbv12I	GWGCWC	1 cut(s)	49
BbvI	GCAGC	4 cut(s)	76, 122, 278, 365
BccI	CCATC	2 cut(s)	218, 290
BceAI	ACGGC	1 cut(s)	125
BciT130I	CCWGG	1 cut(s)	381
BcnI	CCSGG	1 cut(s)	118
BfaI	CTAG	1 cut(s)	447
BfmI	CTRYAG	1 cut(s)	264
BglII	AGATCT	1 cut(s)	511
BisI	GCNGC	6 cut(s)	5, 65, 122, 136, 267, 354
BlsI	GCNGC	6 cut(s)	6, 66, 123, 137, 268, 355
Bme1390I	CCNGG	2 cut(s)	118, 381
Bme18I	GGWCC	1 cut(s)	493
BmgT120I	GGNCC	1 cut(s)	493
BmrFI	CCNGG	2 cut(s)	118, 381
BmtI	GCTAGC	1 cut(s)	450
BpuMI	CCSGG	1 cut(s)	118
BsaHI	GRCGYC	1 cut(s)	104
BsaJI	CCNNGG	1 cut(s)	99
Bsc4I	CCNNNNNNNGG	1 cut(s)	100
Bse1I	ACTGG	1 cut(s)	108
BseBI	CCWGG	1 cut(s)	381
BseDI	CCNNGG	1 cut(s)	99
BseGI	GGATG	2 cut(s)	24, 226
BseLI	CCNNNNNNNGG	1 cut(s)	100
BseNI	ACTGG	1 cut(s)	108
BseXI	GCAGC	4 cut(s)	76, 122, 278, 365
BsiHKAI	GWGCWC	1 cut(s)	49
BsiSI	CCGG	2 cut(s)	118, 151
BslI	CCNNNNNNNGG	1 cut(s)	100
Bsp1286I	GDGCHC	1 cut(s)	49
Bsp143I	GATC	3 cut(s)	129, 405, 511
Bsp19I	CCATGG	1 cut(s)	99
BspACI	CCGC	4 cut(s)	5, 121, 133, 269
BspMAI	CTGCAG	1 cut(s)	268
BspOI	GCTAGC	1 cut(s)	450
BspPI	GGATC	2 cut(s)	124, 413
BspQI	GCTCTTC	1 cut(s)	54
BsrI	ACTGG	1 cut(s)	108
BssECI	CCNNGG	1 cut(s)	99
BssMI	GATC	3 cut(s)	129, 405, 511
BssNI	GRCGYC	1 cut(s)	104
BssT1I	CCWWGG	1 cut(s)	99
Bst2UI	CCWGG	1 cut(s)	381
Bst4CI	ACNGT	1 cut(s)	73
Bst6I	CTCTTC	2 cut(s)	18, 54
BstACI	GRCGYC	1 cut(s)	104
BstC8I	GCNNGC	2 cut(s)	372, 448
BstDSI	CCRYGG	1 cut(s)	99
BstF5I	GGATG	2 cut(s)	24, 226
BstHHI	GCGC	2 cut(s)	64, 140
BstKTI	GATC	3 cut(s)	132, 408, 514
BstMBI	GATC	3 cut(s)	129, 405, 511
BstMWI	GCNNNNNNNGC	4 cut(s)	144, 275, 362, 371
BstNI	CCWGG	1 cut(s)	381
BstNSI	RCATGY	1 cut(s)	374
BstSCI	CCNGG	2 cut(s)	116, 379
BstSFI	CTRYAG	1 cut(s)	264
BstV1I	GCAGC	4 cut(s)	76, 122, 278, 365
BstX2I	RGATCY	1 cut(s)	511
BstYI	RGATCY	1 cut(s)	511
BtgI	CCRYGG	1 cut(s)	99
BtsCI	GGATG	2 cut(s)	24, 226
BtsI	GCAGTG	1 cut(s)	83
BtsIMutI	CAGTG	1 cut(s)	83
Cac8I	GCNNGC	2 cut(s)	372, 448
CfoI	GCGC	2 cut(s)	64, 140
Cfr13I	GGNCC	1 cut(s)	493
CseI	GACGC	1 cut(s)	93
Csp6I	GTAC	1 cut(s)	26
CviAII	CATG	4 cut(s)	100, 314, 322, 371
CviJI	RGCY	9 cut(s)	47, 124, 301, 332, 356, 365, 446, 450, 505
CviKI_1	RGCY	9 cut(s)	47, 124, 301, 332, 356, 365, 446, 450, 505
CviQI	GTAC	1 cut(s)	26
DpnI	GATC	3 cut(s)	131, 407, 513
DpnII	GATC	3 cut(s)	129, 405, 511
Eam1104I	CTCTTC	2 cut(s)	18, 54
EarI	CTCTTC	2 cut(s)	18, 54
Ecl136II	GAGCTC	1 cut(s)	47
Eco130I	CCWWGG	1 cut(s)	99
Eco24I	GRGCYC	1 cut(s)	49
Eco47I	GGWCC	1 cut(s)	493
Eco53kI	GAGCTC	1 cut(s)	47
EcoICRI	GAGCTC	1 cut(s)	47
EcoRII	CCWGG	1 cut(s)	379
EcoT14I	CCWWGG	1 cut(s)	99
EcoT38I	GRGCYC	1 cut(s)	49
ErhI	CCWWGG	1 cut(s)	99
FaeI	CATG	4 cut(s)	103, 317, 325, 374
FalI	AAGNNNNNCTT	2 cut(s)	285, 317
FatI	CATG	4 cut(s)	99, 313, 321, 370
FblI	GTMKAC	1 cut(s)	200
Fnu4HI	GCNGC	6 cut(s)	5, 65, 122, 136, 267, 354
FokI	GGATG	2 cut(s)	31, 233
FriOI	GRGCYC	1 cut(s)	49
Fsp4HI	GCNGC	6 cut(s)	5, 65, 122, 136, 267, 354
FspBI	CTAG	1 cut(s)	447
GlaI	GCGC	2 cut(s)	63, 139
GluI	GCNGC	6 cut(s)	5, 65, 122, 136, 267, 354
HapII	CCGG	2 cut(s)	118, 151
HgaI	GACGC	1 cut(s)	93
HhaI	GCGC	2 cut(s)	64, 140
Hin1I	GRCGYC	1 cut(s)	104
Hin1II	CATG	4 cut(s)	103, 317, 325, 374
Hin6I	GCGC	2 cut(s)	62, 138
HinP1I	GCGC	2 cut(s)	62, 138
HindIII	AAGCTT	1 cut(s)	363
HinfI	GANTC	1 cut(s)	184
HpaII	CCGG	2 cut(s)	118, 151
HphI	GGTGA	1 cut(s)	106
Hpy166II	GTNNAC	2 cut(s)	28, 201
Hpy188I	TCNGA	5 cut(s)	18, 44, 211, 256, 415
Hpy8I	GTNNAC	2 cut(s)	28, 201
HpyAV	CCTTC	3 cut(s)	105, 211, 434
HpyCH4III	ACNGT	1 cut(s)	73
HpyCH4V	TGCA	5 cut(s)	266, 278, 353, 370, 485
HpyF10VI	GCNNNNNNNGC	4 cut(s)	144, 275, 362, 371
Hsp92I	GRCGYC	1 cut(s)	104
Hsp92II	CATG	4 cut(s)	103, 317, 325, 374
HspAI	GCGC	2 cut(s)	62, 138
Kzo9I	GATC	3 cut(s)	129, 405, 511
LguI	GCTCTTC	1 cut(s)	54
LmnI	GCTCC	1 cut(s)	329
LpnPI	CCDG	7 cut(s)	102, 121, 131, 164, 291, 366, 393
Lsp1109I	GCAGC	4 cut(s)	76, 122, 278, 365
MaeI	CTAG	1 cut(s)	447
MaeIII	GTNAC	2 cut(s)	238, 460
MalI	GATC	3 cut(s)	131, 407, 513
MboI	GATC	3 cut(s)	129, 405, 511
MboII	GAAGA	4 cut(s)	5, 41, 305, 449
MflI	RGATCY	1 cut(s)	511
MhlI	GDGCHC	1 cut(s)	49
MluCI	AATT	6 cut(s)	53, 189, 244, 409, 418, 427
MnlI	CCTC	2 cut(s)	50, 392
MseI	TTAA	2 cut(s)	477, 507
MspA1I	CMGCKG	2 cut(s)	135, 269
MspI	CCGG	2 cut(s)	118, 151
MspR9I	CCNGG	2 cut(s)	118, 381
MvaI	CCWGG	1 cut(s)	381
MwoI	GCNNNNNNNGC	4 cut(s)	144, 275, 362, 371
NciI	CCSGG	1 cut(s)	118
NcoI	CCATGG	1 cut(s)	99
NdeII	GATC	3 cut(s)	129, 405, 511
NheI	GCTAGC	1 cut(s)	446
NlaIII	CATG	4 cut(s)	103, 317, 325, 374
NmuCI	GTSAC	1 cut(s)	460
NspI	RCATGY	1 cut(s)	374
PaeI	GCATGC	1 cut(s)	374
PciSI	GCTCTTC	1 cut(s)	54
PcsI	WCGNNNNNNNCGW	1 cut(s)	151
PfeI	GAWTC	1 cut(s)	184
PkrI	GCNGC	6 cut(s)	6, 66, 123, 137, 268, 355
Psp124BI	GAGCTC	1 cut(s)	49
Psp6I	CCWGG	1 cut(s)	379
PspGI	CCWGG	1 cut(s)	379
PspPI	GGNCC	1 cut(s)	493
PstI	CTGCAG	1 cut(s)	268
PsuI	RGATCY	1 cut(s)	511
RsaI	GTAC	1 cut(s)	27
RsaNI	GTAC	1 cut(s)	26
SacI	GAGCTC	1 cut(s)	49
SapI	GCTCTTC	1 cut(s)	54
SaqAI	TTAA	2 cut(s)	477, 507
SatI	GCNGC	6 cut(s)	5, 65, 122, 136, 267, 354
Sau3AI	GATC	3 cut(s)	129, 405, 511
Sau96I	GGNCC	1 cut(s)	493
ScrFI	CCNGG	2 cut(s)	118, 381
SduI	GDGCHC	1 cut(s)	49
SetI	ASST	7 cut(s)	42, 49, 310, 334, 367, 403, 498
SfcI	CTRYAG	1 cut(s)	264
SinI	GGWCC	1 cut(s)	493
SphI	GCATGC	1 cut(s)	374
Sse9I	AATT	6 cut(s)	53, 189, 244, 409, 418, 427
SsiI	CCGC	4 cut(s)	5, 121, 133, 269
SspMI	CTAG	1 cut(s)	447
SstI	GAGCTC	1 cut(s)	49
StyD4I	CCNGG	2 cut(s)	116, 379
StyI	CCWWGG	1 cut(s)	99
TaaI	ACNGT	1 cut(s)	73
TaqI	TCGA	1 cut(s)	128
TasI	AATT	6 cut(s)	53, 189, 244, 409, 418, 427
TatI	WGTACW	1 cut(s)	25
TauI	GCSGC	2 cut(s)	7, 124
TfiI	GAWTC	1 cut(s)	184
Tru1I	TTAA	2 cut(s)	477, 507
Tru9I	TTAA	2 cut(s)	477, 507
TscAI	CASTG	1 cut(s)	90
TseFI	GTSAC	1 cut(s)	460
TseI	GCWGC	4 cut(s)	64, 135, 266, 353
Tsp45I	GTSAC	1 cut(s)	460
TspRI	CASTG	1 cut(s)	90
VpaK11BI	GGWCC	1 cut(s)	493
XapI	RAATTY	1 cut(s)	418
XceI	RCATGY	1 cut(s)	374
XmiI	GTMKAC	1 cut(s)	200
XspI	CTAG	1 cut(s)	447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.