Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0000857

Physical Location & Seq

Genomic Coordinates Forward (+)

20583662 .. 20617743

Gene Structure 34082 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG120000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGTATAAGGAAGATGGGCTTACAGGTGGCCATGTGATAATGCTGGGGGCAGATCCTTTGAGTAGAGCTGCTGCCATTGAAGCTCTGCATGCCTATTCTGGTGGGAAGCTCCAAGGATTTAAACGGAGGCCTTCGATATACAATTATGAAAAACAGAGCAGAAATACTGGAAAGGCATGTATAGCATCAACATTACAGGTGAAGAAACTGATTGTGTATGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0000162 GO:0003674 GO:0003824 GO:0003949 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

His_biosynth

Protein Analysis

74

Amino Acids

8.1

Weight (kDa)

9.56

Isoelectric Point (pI)

59.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000857)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36230
fragaria_vesca	FvH4_6g18790 FvH4_6g18790 FvH4_6g18790 FvH4_6g18790 FvH4_6g18790 FvH4_6g18790
malus_domestica	MD12G1036500.v1.1 MD14G1023300.v1.1
prunus_persica	Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1
pyrus_communis	pycom12g02400 pycom14g02220 pycom14g02230
rosa_chinensis	RchiOBHm_Chr1g0324901 RchiOBHm_Chr1g0350151 RchiOBHm_Chr3g0473801 RchiOBHm_Chr4g0393091 RchiOBHm_Chr4g0409701 RchiOBHm_Chr5g0027171
rosa_laevigata	RLG00000014193 RLG00000023983 RLG00000035737
rosa_multiflora	Rmu_sc0001207.1_g000028 Rmu_sc0002986.1_g000013 Rmu_sc0007035.1_g000005 Rmu_sc0016122.1_g000001 Rmu_sc0037919.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029230 Rroxscaffold_1G00029310 Rroxscaffold_2G00114250 Rroxscaffold_3G00260930 Rroxscaffold_3G00260940 Rroxscaffold_4G00311820 Rroxscaffold_4G00332560 Rroxscaffold_5G00338520 Rroxscaffold_5G00355640 Rroxscaffold_6G00407790
rosa_rugosa	Rorug01G0107500 Rorug02G0045900 Rorug03G0135600 Rorug06G0225600 Rorug07G0319400 Rorug07G0330900
rosa_samantha	Rh1AG080400 Rh1AG119900 Rh1AG120000 Rh1AG233100 Rh1CG115000 Rh1CG217700 Rh2BG241500 Rh2BG353000 Rh2DG556200 Rh3AG186100 Rh3AG202300 Rh3BG214400 Rh3CG211200 Rh3DG210400 Rh3DG227900 Rh5AG343700 Rh5DG191000
rosa_wichuraiana	Rw1G018100 Rw3G017000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	47
AcoI	YGGCCR	1 cut(s)	28
AgsI	TTSAA	1 cut(s)	80
AluBI	AGCT	3 cut(s)	68, 83, 109
AluI	AGCT	3 cut(s)	68, 83, 109
AlwI	GGATC	1 cut(s)	47
AoxI	GGCC	2 cut(s)	28, 128
ApeKI	GCWGC	2 cut(s)	68, 71
AsuHPI	GGTGA	1 cut(s)	211
BalI	TGGCCA	1 cut(s)	30
BbvI	GCAGC	2 cut(s)	55, 58
BccI	CCATC	1 cut(s)	8
BisI	GCNGC	2 cut(s)	69, 72
BlsI	GCNGC	2 cut(s)	70, 73
BmsI	GCATC	1 cut(s)	194
BsaJI	CCNNGG	1 cut(s)	112
Bse1I	ACTGG	1 cut(s)	172
BseDI	CCNNGG	1 cut(s)	112
BseNI	ACTGG	1 cut(s)	172
BseXI	GCAGC	2 cut(s)	55, 58
BseYI	CCCAGC	1 cut(s)	43
BshFI	GGCC	2 cut(s)	30, 130
BsnI	GGCC	2 cut(s)	30, 130
Bsp143I	GATC	1 cut(s)	52
BspANI	GGCC	2 cut(s)	30, 130
BspPI	GGATC	1 cut(s)	47
BsrI	ACTGG	1 cut(s)	172
BssECI	CCNNGG	1 cut(s)	112
BssMI	GATC	1 cut(s)	52
BssT1I	CCWWGG	1 cut(s)	112
BstC8I	GCNNGC	1 cut(s)	90
BstKTI	GATC	1 cut(s)	55
BstMBI	GATC	1 cut(s)	52
BstMWI	GCNNNNNNNGC	3 cut(s)	80, 89, 182
BstNSI	RCATGY	2 cut(s)	92, 180
BstV1I	GCAGC	2 cut(s)	55, 58
BstX2I	RGATCY	1 cut(s)	52
BstYI	RGATCY	1 cut(s)	52
BsuRI	GGCC	2 cut(s)	30, 130
Cac8I	GCNNGC	1 cut(s)	90
CviAII	CATG	3 cut(s)	32, 89, 177
CviJI	RGCY	6 cut(s)	19, 30, 68, 83, 109, 130
CviKI_1	RGCY	6 cut(s)	19, 30, 68, 83, 109, 130
DpnI	GATC	1 cut(s)	54
DpnII	GATC	1 cut(s)	52
DraI	TTTAAA	1 cut(s)	121
EaeI	YGGCCR	1 cut(s)	28
Eco130I	CCWWGG	1 cut(s)	112
Eco147I	AGGCCT	1 cut(s)	130
EcoT14I	CCWWGG	1 cut(s)	112
ErhI	CCWWGG	1 cut(s)	112
FaeI	CATG	3 cut(s)	35, 92, 180
FaiI	YATR	8 cut(s)	6, 33, 90, 139, 147, 178, 182, 219
FalI	AAGNNNNNCTT	1 cut(s)	35
FatI	CATG	3 cut(s)	31, 88, 176
Fnu4HI	GCNGC	2 cut(s)	69, 72
Fsp4HI	GCNGC	2 cut(s)	69, 72
GluI	GCNGC	2 cut(s)	69, 72
GsaI	CCCAGC	1 cut(s)	47
HaeIII	GGCC	2 cut(s)	30, 130
Hin1II	CATG	3 cut(s)	35, 92, 180
HphI	GGTGA	1 cut(s)	211
HpyAV	CCTTC	1 cut(s)	141
HpyCH4V	TGCA	1 cut(s)	88
HpyF10VI	GCNNNNNNNGC	3 cut(s)	80, 89, 182
Hsp92II	CATG	3 cut(s)	35, 92, 180
Kzo9I	GATC	1 cut(s)	52
LmnI	GCTCC	1 cut(s)	114
LpnPI	CCDG	5 cut(s)	9, 29, 84, 153, 182
Lsp1109I	GCAGC	2 cut(s)	55, 58
LweI	GCATC	1 cut(s)	194
MalI	GATC	1 cut(s)	54
MboI	GATC	1 cut(s)	52
MboII	GAAGA	2 cut(s)	23, 214
MflI	RGATCY	1 cut(s)	52
MlsI	TGGCCA	1 cut(s)	30
MluCI	AATT	1 cut(s)	142
MluNI	TGGCCA	1 cut(s)	30
MnlI	CCTC	1 cut(s)	120
Mox20I	TGGCCA	1 cut(s)	30
MscI	TGGCCA	1 cut(s)	30
MseI	TTAA	1 cut(s)	120
Msp20I	TGGCCA	1 cut(s)	30
MwoI	GCNNNNNNNGC	3 cut(s)	80, 89, 182
NdeII	GATC	1 cut(s)	52
NlaIII	CATG	3 cut(s)	35, 92, 180
NspI	RCATGY	2 cut(s)	92, 180
PaeI	GCATGC	1 cut(s)	92
PceI	AGGCCT	1 cut(s)	130
PkrI	GCNGC	2 cut(s)	70, 73
PspFI	CCCAGC	1 cut(s)	43
PsuI	RGATCY	1 cut(s)	52
SaqAI	TTAA	1 cut(s)	120
SatI	GCNGC	2 cut(s)	69, 72
Sau3AI	GATC	1 cut(s)	52
SetI	ASST	5 cut(s)	28, 70, 85, 111, 201
SfaNI	GCATC	1 cut(s)	194
SgeI	CNNG	9 cut(s)	36, 44, 56, 101, 111, 125, 180, 189, 209
SphI	GCATGC	1 cut(s)	92
Sse9I	AATT	1 cut(s)	142
SseBI	AGGCCT	1 cut(s)	130
StuI	AGGCCT	1 cut(s)	130
StyI	CCWWGG	1 cut(s)	112
TaqI	TCGA	1 cut(s)	134
TasI	AATT	1 cut(s)	142
Tru1I	TTAA	1 cut(s)	120
Tru9I	TTAA	1 cut(s)	120
TseI	GCWGC	2 cut(s)	68, 71
TspDTI	ATGAA	1 cut(s)	162
TspGWI	ACGGA	1 cut(s)	139
XceI	RCATGY	2 cut(s)	92, 180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.