Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0000857

Physical Location & Seq

Genomic Coordinates Reverse (-)

39838676 .. 39843461

Gene Structure 4786 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G018100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGCTTTTGAGATTGGACAGTCTCGGTAAAAAGAAGTTTGATGGGTCTAGGCCATCTGCAACGTTCAGCGATCGAGTACCCATAAGCTGTGCTATTTGTTTCCGACCCTGTATTGATATACACAAGGGGAAAGTGAAACAGATTGTTGGGTCGACGCTTTCGGATTCTAAGGAAGATGGGCCGGCTCTGGTTACCAATTTTGTGTCAGATAAGTCGGCGGGGGAGTATGCAAAGATGTATAAGGAAGATGGGCTTACAGGTGGCCATGTGATAATGCTGGGGGCAGATCCTTTGAGTAGAGCTGCTGCCATTGAAGCTCTGCATGCCTATTCTGGTGGTTTGCAAGTAGGAGGTGGGATCAATTCTAATAATTCTTTCCAATACATAGAAGAAGGGGCTAGCCATGTCATTGTCACTTTTTATGTATTTAATAATGGGCAAATGGATCTTGAAAGGCTTAAAGATCTTGTTCATGTTGTTGGAAAAGAGAGTATTAGCTTGTTTAGCCCCATTGTGACTTATATGTTCTTTAATACATTTCTAGTGGGCGACATAACCATAATCCGGAACATTCTCATGGGACGAATTTTGAGTATCGATGATCAAAGAATTTGTTTAATGGATGTTCGTGTGAAGTCTTTAGCATACGGATCATCATATCACTACCAGGATGTTCTAATCAGTCATGCCAAAGCCAATATGTGTATGAATTCAAGAGATCTTCTCTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0000162 GO:0003674 GO:0003824 GO:0003949 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

His_biosynth

Protein Analysis

243

Amino Acids

26.68

Weight (kDa)

7.04

Isoelectric Point (pI)

41.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
His_biosynth	PF00977	36 - 165	1.6e-08	Histidine biosynthesis protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000857)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36230
fragaria_vesca	FvH4_6g18790 FvH4_6g18790 FvH4_6g18790 FvH4_6g18790 FvH4_6g18790 FvH4_6g18790
malus_domestica	MD12G1036500.v1.1 MD14G1023300.v1.1
prunus_persica	Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1
pyrus_communis	pycom12g02400 pycom14g02220 pycom14g02230
rosa_chinensis	RchiOBHm_Chr1g0324901 RchiOBHm_Chr1g0350151 RchiOBHm_Chr3g0473801 RchiOBHm_Chr4g0393091 RchiOBHm_Chr4g0409701 RchiOBHm_Chr5g0027171
rosa_laevigata	RLG00000014193 RLG00000023983 RLG00000035737
rosa_multiflora	Rmu_sc0001207.1_g000028 Rmu_sc0002986.1_g000013 Rmu_sc0007035.1_g000005 Rmu_sc0016122.1_g000001 Rmu_sc0037919.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029230 Rroxscaffold_1G00029310 Rroxscaffold_2G00114250 Rroxscaffold_3G00260930 Rroxscaffold_3G00260940 Rroxscaffold_4G00311820 Rroxscaffold_4G00332560 Rroxscaffold_5G00338520 Rroxscaffold_5G00355640 Rroxscaffold_6G00407790
rosa_rugosa	Rorug01G0107500 Rorug02G0045900 Rorug03G0135600 Rorug06G0225600 Rorug07G0319400 Rorug07G0330900
rosa_samantha	Rh1AG080400 Rh1AG119900 Rh1AG120000 Rh1AG233100 Rh1CG115000 Rh1CG217700 Rh2BG241500 Rh2BG353000 Rh2DG556200 Rh3AG186100 Rh3AG202300 Rh3BG214400 Rh3CG211200 Rh3DG210400 Rh3DG227900 Rh5AG343700 Rh5DG191000
rosa_wichuraiana	Rw1G018100 Rw3G017000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	152
AccIII	TCCGGA	1 cut(s)	564
AciI	CCGC	1 cut(s)	218
AclI	AACGTT	1 cut(s)	62
AclWI	GGATC	4 cut(s)	281, 365, 453, 658
AcoI	YGGCCR	1 cut(s)	262
AcsI	RAATTY	3 cut(s)	585, 609, 709
AfaI	GTAC	1 cut(s)	78
AfiI	CCNNNNNNNGG	1 cut(s)	564
AgsI	TTSAA	3 cut(s)	314, 452, 714
AjnI	CCWGG	1 cut(s)	666
AluBI	AGCT	4 cut(s)	87, 302, 317, 498
AluI	AGCT	4 cut(s)	87, 302, 317, 498
Alw26I	GTCTC	1 cut(s)	26
AlwI	GGATC	4 cut(s)	281, 365, 453, 658
Aor13HI	TCCGGA	1 cut(s)	564
AoxI	GGCC	3 cut(s)	50, 179, 262
ApeKI	GCWGC	2 cut(s)	302, 305
ApoI	RAATTY	3 cut(s)	585, 609, 709
AspS9I	GGNCC	1 cut(s)	179
AsuNHI	GCTAGC	1 cut(s)	398
BalI	TGGCCA	1 cut(s)	264
BbvI	GCAGC	2 cut(s)	289, 292
BccI	CCATC	4 cut(s)	35, 61, 170, 242
BciT130I	CCWGG	1 cut(s)	668
BclI	TGATCA	1 cut(s)	601
BcoDI	GTCTC	1 cut(s)	26
BfaI	CTAG	3 cut(s)	48, 399, 542
BglII	AGATCT	2 cut(s)	463, 718
BisI	GCNGC	2 cut(s)	303, 306
BlsI	GCNGC	2 cut(s)	304, 307
Bme1390I	CCNGG	1 cut(s)	668
BmgT120I	GGNCC	1 cut(s)	179
BmrFI	CCNGG	1 cut(s)	668
BmtI	GCTAGC	1 cut(s)	402
BplI	GAGNNNNNCTC	1 cut(s)	708
Bsa29I	ATCGAT	1 cut(s)	597
BsaWI	WCCGGW	1 cut(s)	564
Bsc4I	CCNNNNNNNGG	1 cut(s)	564
Bse118I	RCCGGY	1 cut(s)	181
BseAI	TCCGGA	1 cut(s)	564
BseBI	CCWGG	1 cut(s)	668
BseCI	ATCGAT	1 cut(s)	597
BseGI	GGATG	2 cut(s)	628, 676
BseLI	CCNNNNNNNGG	1 cut(s)	564
BseXI	GCAGC	2 cut(s)	289, 292
BseYI	CCCAGC	1 cut(s)	277
Bsh1285I	CGRYCG	1 cut(s)	73
BshFI	GGCC	3 cut(s)	52, 181, 264
BshVI	ATCGAT	1 cut(s)	597
BsiEI	CGRYCG	1 cut(s)	73
BsiSI	CCGG	2 cut(s)	182, 565
BslFI	GGGAC	1 cut(s)	594
BslI	CCNNNNNNNGG	1 cut(s)	564
BsmAI	GTCTC	1 cut(s)	26
BsmFI	GGGAC	1 cut(s)	594
BsnI	GGCC	3 cut(s)	52, 181, 264
Bsp13I	TCCGGA	1 cut(s)	564
Bsp143I	GATC	8 cut(s)	70, 286, 357, 445, 463, 601, 650, 718
BspACI	CCGC	1 cut(s)	218
BspANI	GGCC	3 cut(s)	52, 181, 264
BspDI	ATCGAT	1 cut(s)	597
BspEI	TCCGGA	1 cut(s)	564
BspOI	GCTAGC	1 cut(s)	402
BspPI	GGATC	4 cut(s)	281, 365, 453, 658
BsrFI	RCCGGY	1 cut(s)	181
BssAI	RCCGGY	1 cut(s)	181
BssMI	GATC	8 cut(s)	70, 286, 357, 445, 463, 601, 650, 718
Bst2UI	CCWGG	1 cut(s)	668
Bst4CI	ACNGT	1 cut(s)	20
BstC8I	GCNNGC	3 cut(s)	183, 324, 400
BstDEI	CTNAG	1 cut(s)	168
BstEII	GGTNACC	1 cut(s)	190
BstF5I	GGATG	2 cut(s)	628, 676
BstKTI	GATC	8 cut(s)	73, 289, 360, 448, 466, 604, 653, 721
BstMAI	GTCTC	1 cut(s)	26
BstMBI	GATC	8 cut(s)	70, 286, 357, 445, 463, 601, 650, 718
BstMCI	CGRYCG	1 cut(s)	73
BstMWI	GCNNNNNNNGC	3 cut(s)	314, 323, 504
BstNI	CCWGG	1 cut(s)	668
BstNSI	RCATGY	1 cut(s)	326
BstPI	GGTNACC	1 cut(s)	190
BstSCI	CCNGG	1 cut(s)	666
BstV1I	GCAGC	2 cut(s)	289, 292
BstX2I	RGATCY	4 cut(s)	286, 445, 463, 718
BstYI	RGATCY	4 cut(s)	286, 445, 463, 718
Bsu15I	ATCGAT	1 cut(s)	597
BsuRI	GGCC	3 cut(s)	52, 181, 264
BsuTUI	ATCGAT	1 cut(s)	597
BtsCI	GGATG	2 cut(s)	628, 676
Cac8I	GCNNGC	3 cut(s)	183, 324, 400
Cfr10I	RCCGGY	1 cut(s)	181
Cfr13I	GGNCC	1 cut(s)	179
ClaI	ATCGAT	1 cut(s)	597
CseI	GACGC	1 cut(s)	163
Csp6I	GTAC	1 cut(s)	77
CviAII	CATG	6 cut(s)	266, 323, 404, 473, 577, 686
CviQI	GTAC	1 cut(s)	77
DdeI	CTNAG	1 cut(s)	168
DpnI	GATC	8 cut(s)	72, 288, 359, 447, 465, 603, 652, 720
DpnII	GATC	8 cut(s)	70, 286, 357, 445, 463, 601, 650, 718
EaeI	YGGCCR	1 cut(s)	262
Eco91I	GGTNACC	1 cut(s)	190
EcoO65I	GGTNACC	1 cut(s)	190
EcoRI	GAATTC	1 cut(s)	709
EcoRII	CCWGG	1 cut(s)	666
FaeI	CATG	6 cut(s)	269, 326, 407, 476, 580, 689
FalI	AAGNNNNNCTT	2 cut(s)	237, 269
FaqI	GGGAC	1 cut(s)	594
FatI	CATG	6 cut(s)	265, 322, 403, 472, 576, 685
FauI	CCCGC	1 cut(s)	211
FbaI	TGATCA	1 cut(s)	601
FblI	GTMKAC	1 cut(s)	152
Fnu4HI	GCNGC	2 cut(s)	303, 306
FokI	GGATG	2 cut(s)	635, 683
Fsp4HI	GCNGC	2 cut(s)	303, 306
FspBI	CTAG	3 cut(s)	48, 399, 542
GluI	GCNGC	2 cut(s)	303, 306
GsaI	CCCAGC	1 cut(s)	281
HaeIII	GGCC	3 cut(s)	52, 181, 264
HapII	CCGG	2 cut(s)	182, 565
HgaI	GACGC	1 cut(s)	163
Hin1II	CATG	6 cut(s)	269, 326, 407, 476, 580, 689
HincII	GTYRAC	1 cut(s)	153
HindII	GTYRAC	1 cut(s)	153
HinfI	GANTC	1 cut(s)	164
HpaII	CCGG	2 cut(s)	182, 565
Hpy166II	GTNNAC	1 cut(s)	153
Hpy188I	TCNGA	3 cut(s)	104, 163, 208
Hpy188III	TCNNGA	3 cut(s)	449, 565, 714
Hpy8I	GTNNAC	1 cut(s)	153
Hpy99I	CGWCG	1 cut(s)	157
HpyAV	CCTTC	1 cut(s)	386
HpyCH4III	ACNGT	1 cut(s)	20
HpyCH4IV	ACGT	1 cut(s)	62
HpyCH4V	TGCA	4 cut(s)	59, 230, 322, 343
HpyF10VI	GCNNNNNNNGC	3 cut(s)	314, 323, 504
HpyF3I	CTNAG	1 cut(s)	168
HpySE526I	ACGT	1 cut(s)	62
Hsp92II	CATG	6 cut(s)	269, 326, 407, 476, 580, 689
Kpn2I	TCCGGA	1 cut(s)	564
KroI	GCCGGC	1 cut(s)	181
KroNI	GCCGGC	1 cut(s)	183
Ksp22I	TGATCA	1 cut(s)	601
Kzo9I	GATC	8 cut(s)	70, 286, 357, 445, 463, 601, 650, 718
LpnPI	CCDG	9 cut(s)	121, 173, 195, 243, 263, 318, 578, 653, 680
Lsp1109I	GCAGC	2 cut(s)	289, 292
MaeI	CTAG	3 cut(s)	48, 399, 542
MaeII	ACGT	1 cut(s)	62
MaeIII	GTNAC	3 cut(s)	190, 412, 514
MalI	GATC	8 cut(s)	72, 288, 359, 447, 465, 603, 652, 720
MboI	GATC	8 cut(s)	70, 286, 357, 445, 463, 601, 650, 718
MboII	GAAGA	4 cut(s)	185, 257, 401, 713
MflI	RGATCY	4 cut(s)	286, 445, 463, 718
MlsI	TGGCCA	1 cut(s)	264
MluCI	AATT	6 cut(s)	196, 361, 370, 585, 609, 709
MluNI	TGGCCA	1 cut(s)	264
MmeI	TCCRAC	2 cut(s)	127, 460
MnlI	CCTC	1 cut(s)	344
Mox20I	TGGCCA	1 cut(s)	264
MroI	TCCGGA	1 cut(s)	564
MroNI	GCCGGC	1 cut(s)	181
MscI	TGGCCA	1 cut(s)	264
MseI	TTAA	4 cut(s)	429, 459, 531, 617
MslI	CAYNNNNRTG	1 cut(s)	575
Msp20I	TGGCCA	1 cut(s)	264
MspI	CCGG	2 cut(s)	182, 565
MspR9I	CCNGG	1 cut(s)	668
MvaI	CCWGG	1 cut(s)	668
MwoI	GCNNNNNNNGC	3 cut(s)	314, 323, 504
NaeI	GCCGGC	1 cut(s)	183
NdeII	GATC	8 cut(s)	70, 286, 357, 445, 463, 601, 650, 718
NgoMIV	GCCGGC	1 cut(s)	181
NheI	GCTAGC	1 cut(s)	398
NlaIII	CATG	6 cut(s)	269, 326, 407, 476, 580, 689
NmuCI	GTSAC	2 cut(s)	412, 514
NspI	RCATGY	1 cut(s)	326
PaeI	GCATGC	1 cut(s)	326
PdiI	GCCGGC	1 cut(s)	183
PfeI	GAWTC	1 cut(s)	164
PkrI	GCNGC	2 cut(s)	304, 307
Ple19I	CGATCG	1 cut(s)	73
Psp1406I	AACGTT	1 cut(s)	62
Psp6I	CCWGG	1 cut(s)	666
PspEI	GGTNACC	1 cut(s)	190
PspFI	CCCAGC	1 cut(s)	277
PspGI	CCWGG	1 cut(s)	666
PspPI	GGNCC	1 cut(s)	179
PsuI	RGATCY	4 cut(s)	286, 445, 463, 718
PvuI	CGATCG	1 cut(s)	73
RsaI	GTAC	1 cut(s)	78
RsaNI	GTAC	1 cut(s)	77
RseI	CAYNNNNRTG	1 cut(s)	575
SalI	GTCGAC	1 cut(s)	151
SaqAI	TTAA	4 cut(s)	429, 459, 531, 617
SatI	GCNGC	2 cut(s)	303, 306
Sau3AI	GATC	8 cut(s)	70, 286, 357, 445, 463, 601, 650, 718
Sau96I	GGNCC	1 cut(s)	179
ScrFI	CCNGG	1 cut(s)	668
SetI	ASST	7 cut(s)	65, 89, 262, 304, 319, 355, 500
SmiMI	CAYNNNNRTG	1 cut(s)	575
SphI	GCATGC	1 cut(s)	326
Sse9I	AATT	6 cut(s)	196, 361, 370, 585, 609, 709
SsiI	CCGC	1 cut(s)	218
SspMI	CTAG	3 cut(s)	48, 399, 542
StyD4I	CCNGG	1 cut(s)	666
TaaI	ACNGT	1 cut(s)	20
TaiI	ACGT	1 cut(s)	65
TaqI	TCGA	3 cut(s)	73, 152, 597
TasI	AATT	6 cut(s)	196, 361, 370, 585, 609, 709
TfiI	GAWTC	1 cut(s)	164
Tru1I	TTAA	4 cut(s)	429, 459, 531, 617
Tru9I	TTAA	4 cut(s)	429, 459, 531, 617
TseFI	GTSAC	2 cut(s)	412, 514
TseI	GCWGC	2 cut(s)	302, 305
Tsp45I	GTSAC	2 cut(s)	412, 514
TspDTI	ATGAA	2 cut(s)	461, 722
TspGWI	ACGGA	1 cut(s)	663
XapI	RAATTY	3 cut(s)	585, 609, 709
XceI	RCATGY	1 cut(s)	326
XmiI	GTMKAC	1 cut(s)	152
XspI	CTAG	3 cut(s)	48, 399, 542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.