Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000857

Physical Location & Seq

Genomic Coordinates Reverse (-)

66758175 .. 66759815

Gene Structure 1641 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00332560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGGGATGATCGGGGGAGGAGGAGATCACGAAAATGGGGAGGATCGGCCCATGCAACGCCGGAAAAGTGATTTTCCGTCCGGGTCGGGTCGTACGGAGCCGGGGTGGCTTCGATCCGTGCTTGGAGGCAGCGGCGGGGCAAGGTGGCACCGGGGGGAGCTTGGGCGGGGGGTGGCGAAACCGGGGATAGCCGGTCGTGGCCGGGGACGCCGAAGAGGGAGGAAAAACCGGGAAGGAAAATATGCAATTGTCACAAATAGATGGCAAAAGTTCCGTGACGTGTATCTTGACAAGGAAATATTAGACTTCCTTGCCAAGTATGCAAACGAGTTTCTGGTACATGGTATAGATGTGGAAGGGAAAAATGACATCATTATGACGGTTCCTGTTCTTTATCCGTGTCATCAGAAGCTTCGCTCTATGCTTGAATGTTGGCAGAAACTTGGGGACTCTGATCTCAAAGCACACTCTTCCAGTGGTGTAAAATTTAGTGTGCTATCATACAATGTGCATGCTAATCTTTATACTGATCATGGTAGGTGCCCTTACTGCCCAGAATGGGCTGGTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0000162 GO:0003674 GO:0003824 GO:0003949 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

His_biosynth

Protein Analysis

190

Amino Acids

21.25

Weight (kDa)

9.63

Isoelectric Point (pI)

45.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000857)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36230
fragaria_vesca	FvH4_6g18790 FvH4_6g18790 FvH4_6g18790 FvH4_6g18790 FvH4_6g18790 FvH4_6g18790
malus_domestica	MD12G1036500.v1.1 MD14G1023300.v1.1
prunus_persica	Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1
pyrus_communis	pycom12g02400 pycom14g02220 pycom14g02230
rosa_chinensis	RchiOBHm_Chr1g0324901 RchiOBHm_Chr1g0350151 RchiOBHm_Chr3g0473801 RchiOBHm_Chr4g0393091 RchiOBHm_Chr4g0409701 RchiOBHm_Chr5g0027171
rosa_laevigata	RLG00000014193 RLG00000023983 RLG00000035737
rosa_multiflora	Rmu_sc0001207.1_g000028 Rmu_sc0002986.1_g000013 Rmu_sc0007035.1_g000005 Rmu_sc0016122.1_g000001 Rmu_sc0037919.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029230 Rroxscaffold_1G00029310 Rroxscaffold_2G00114250 Rroxscaffold_3G00260930 Rroxscaffold_3G00260940 Rroxscaffold_4G00311820 Rroxscaffold_4G00332560 Rroxscaffold_5G00338520 Rroxscaffold_5G00355640 Rroxscaffold_6G00407790
rosa_rugosa	Rorug01G0107500 Rorug02G0045900 Rorug03G0135600 Rorug06G0225600 Rorug07G0319400 Rorug07G0330900
rosa_samantha	Rh1AG080400 Rh1AG119900 Rh1AG120000 Rh1AG233100 Rh1CG115000 Rh1CG217700 Rh2BG241500 Rh2BG353000 Rh2DG556200 Rh3AG186100 Rh3AG202300 Rh3BG214400 Rh3CG211200 Rh3DG210400 Rh3DG227900 Rh5AG343700 Rh5DG191000
rosa_wichuraiana	Rw1G018100 Rw3G017000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	147, 540
AciI	CCGC	3 cut(s)	132, 135, 166
AclWI	GGATC	2 cut(s)	51, 108
AcoI	YGGCCR	1 cut(s)	199
AcsI	RAATTY	1 cut(s)	485
AcyI	GRCGYC	1 cut(s)	208
AfaI	GTAC	2 cut(s)	94, 339
AfiI	CCNNNNNNNGG	1 cut(s)	559
AflIII	ACRYGT	1 cut(s)	279
AgsI	TTSAA	1 cut(s)	428
AjiI	CACGTC	1 cut(s)	280
AluBI	AGCT	2 cut(s)	160, 412
AluI	AGCT	2 cut(s)	160, 412
AlwI	GGATC	2 cut(s)	51, 108
AoxI	GGCC	2 cut(s)	47, 199
ApeKI	GCWGC	1 cut(s)	129
ApoI	RAATTY	1 cut(s)	485
AspS9I	GGNCC	1 cut(s)	48
AsuC2I	CCSGG	6 cut(s)	82, 102, 152, 183, 203, 230
BaeGI	GKGCMC	1 cut(s)	545
BanI	GGYRCC	2 cut(s)	147, 540
BbvI	GCAGC	1 cut(s)	141
BccI	CCATC	1 cut(s)	255
BclI	TGATCA	1 cut(s)	529
BcnI	CCSGG	6 cut(s)	82, 102, 152, 183, 203, 230
BglI	GCCNNNNNGGC	1 cut(s)	106
BisI	GCNGC	2 cut(s)	130, 133
BlsI	GCNGC	2 cut(s)	131, 134
Bme1390I	CCNGG	6 cut(s)	82, 102, 152, 183, 203, 230
BmgBI	CACGTC	1 cut(s)	280
BmgT120I	GGNCC	1 cut(s)	48
BmiI	GGNNCC	4 cut(s)	99, 149, 384, 542
BmrFI	CCNGG	6 cut(s)	82, 102, 152, 183, 203, 230
BpuMI	CCSGG	6 cut(s)	82, 102, 152, 183, 203, 230
BsaHI	GRCGYC	1 cut(s)	208
BsaJI	CCNNGG	4 cut(s)	101, 151, 182, 202
BsaXI	ACNNNNNCTCC	2 cut(s)	89, 119
Bsc4I	CCNNNNNNNGG	1 cut(s)	559
Bse118I	RCCGGY	1 cut(s)	191
Bse1I	ACTGG	1 cut(s)	474
BseDI	CCNNGG	4 cut(s)	101, 151, 182, 202
BseGI	GGATG	1 cut(s)	12
BseLI	CCNNNNNNNGG	1 cut(s)	559
BseNI	ACTGG	1 cut(s)	474
BseRI	GAGGAG	2 cut(s)	33, 36
BseSI	GKGCMC	1 cut(s)	545
BseXI	GCAGC	1 cut(s)	141
Bsh1285I	CGRYCG	1 cut(s)	196
BshFI	GGCC	2 cut(s)	49, 201
BshNI	GGYRCC	2 cut(s)	147, 540
BsiEI	CGRYCG	1 cut(s)	196
BsiSI	CCGG	8 cut(s)	61, 81, 101, 151, 182, 192, 202, 229
BsiWI	CGTACG	1 cut(s)	92
BslFI	GGGAC	2 cut(s)	219, 461
BslI	CCNNNNNNNGG	1 cut(s)	559
BsmFI	GGGAC	2 cut(s)	219, 461
BsnI	GGCC	2 cut(s)	49, 201
Bsp1286I	GDGCHC	1 cut(s)	545
Bsp143I	GATC	6 cut(s)	9, 25, 43, 113, 454, 529
BspACI	CCGC	3 cut(s)	132, 135, 166
BspANI	GGCC	2 cut(s)	49, 201
BspLI	GGNNCC	4 cut(s)	99, 149, 384, 542
BspPI	GGATC	2 cut(s)	51, 108
BspT107I	GGYRCC	2 cut(s)	147, 540
BsrFI	RCCGGY	1 cut(s)	191
BsrI	ACTGG	1 cut(s)	474
BssAI	RCCGGY	1 cut(s)	191
BssECI	CCNNGG	4 cut(s)	101, 151, 182, 202
BssMI	GATC	6 cut(s)	9, 25, 43, 113, 454, 529
BssNI	GRCGYC	1 cut(s)	208
Bst4CI	ACNGT	1 cut(s)	382
Bst6I	CTCTTC	2 cut(s)	208, 475
BstACI	GRCGYC	1 cut(s)	208
BstC8I	GCNNGC	1 cut(s)	513
BstDEI	CTNAG	1 cut(s)	570
BstF5I	GGATG	1 cut(s)	12
BstKTI	GATC	6 cut(s)	12, 28, 46, 116, 457, 532
BstMBI	GATC	6 cut(s)	9, 25, 43, 113, 454, 529
BstMCI	CGRYCG	1 cut(s)	196
BstMWI	GCNNNNNNNGC	4 cut(s)	106, 207, 320, 549
BstNSI	RCATGY	1 cut(s)	515
BstSCI	CCNGG	6 cut(s)	80, 100, 150, 181, 201, 228
BstSLI	GKGCMC	1 cut(s)	545
BstV1I	GCAGC	1 cut(s)	141
BsuRI	GGCC	2 cut(s)	49, 201
BtrI	CACGTC	1 cut(s)	280
BtsCI	GGATG	1 cut(s)	12
BtsIMutI	CAGTG	1 cut(s)	481
Cac8I	GCNNGC	1 cut(s)	513
Cfr10I	RCCGGY	1 cut(s)	191
Cfr13I	GGNCC	1 cut(s)	48
CseI	GACGC	1 cut(s)	216
Csp6I	GTAC	2 cut(s)	93, 338
CviAII	CATG	4 cut(s)	52, 341, 512, 533
CviJI	RGCY	8 cut(s)	49, 100, 109, 160, 191, 201, 412, 563
CviKI_1	RGCY	8 cut(s)	49, 100, 109, 160, 191, 201, 412, 563
CviQI	GTAC	2 cut(s)	93, 338
DdeI	CTNAG	1 cut(s)	570
DpnI	GATC	6 cut(s)	11, 27, 45, 115, 456, 531
DpnII	GATC	6 cut(s)	9, 25, 43, 113, 454, 529
EaeI	YGGCCR	1 cut(s)	199
Eam1104I	CTCTTC	2 cut(s)	208, 475
EarI	CTCTTC	2 cut(s)	208, 475
FaeI	CATG	4 cut(s)	55, 344, 515, 536
FaqI	GGGAC	2 cut(s)	219, 461
FatI	CATG	4 cut(s)	51, 340, 511, 532
FauI	CCCGC	2 cut(s)	128, 159
FbaI	TGATCA	1 cut(s)	529
Fnu4HI	GCNGC	2 cut(s)	130, 133
FokI	GGATG	1 cut(s)	19
Fsp4HI	GCNGC	2 cut(s)	130, 133
GluI	GCNGC	2 cut(s)	130, 133
HaeIII	GGCC	2 cut(s)	49, 201
HapII	CCGG	8 cut(s)	61, 81, 101, 151, 182, 192, 202, 229
HgaI	GACGC	1 cut(s)	216
Hin1I	GRCGYC	1 cut(s)	208
Hin1II	CATG	4 cut(s)	55, 344, 515, 536
HindIII	AAGCTT	1 cut(s)	410
HinfI	GANTC	1 cut(s)	449
HpaII	CCGG	8 cut(s)	61, 81, 101, 151, 182, 192, 202, 229
Hpy188I	TCNGA	2 cut(s)	408, 454
Hpy188III	TCNNGA	2 cut(s)	29, 287
HpyAV	CCTTC	2 cut(s)	227, 350
HpyCH4III	ACNGT	1 cut(s)	382
HpyCH4IV	ACGT	1 cut(s)	279
HpyCH4V	TGCA	4 cut(s)	55, 245, 323, 511
HpyF10VI	GCNNNNNNNGC	4 cut(s)	106, 207, 320, 549
HpyF3I	CTNAG	1 cut(s)	570
HpySE526I	ACGT	1 cut(s)	279
Hsp92I	GRCGYC	1 cut(s)	208
Hsp92II	CATG	4 cut(s)	55, 344, 515, 536
Ksp22I	TGATCA	1 cut(s)	529
Kzo9I	GATC	6 cut(s)	9, 25, 43, 113, 454, 529
LmnI	GCTCC	2 cut(s)	97, 157
Lsp1109I	GCAGC	1 cut(s)	141
MaeII	ACGT	1 cut(s)	279
MaeIII	GTNAC	2 cut(s)	250, 275
MalI	GATC	6 cut(s)	11, 27, 45, 115, 456, 531
MboI	GATC	6 cut(s)	9, 25, 43, 113, 454, 529
MboII	GAAGA	2 cut(s)	225, 462
MfeI	CAATTG	1 cut(s)	246
MhlI	GDGCHC	1 cut(s)	545
MluCI	AATT	2 cut(s)	246, 485
MlyI	GAGTC	1 cut(s)	443
MnlI	CCTC	6 cut(s)	11, 14, 34, 119, 209, 213
MslI	CAYNNNNRTG	2 cut(s)	33, 374
MspA1I	CMGCKG	1 cut(s)	132
MspI	CCGG	8 cut(s)	61, 81, 101, 151, 182, 192, 202, 229
MspR9I	CCNGG	6 cut(s)	82, 102, 152, 183, 203, 230
MunI	CAATTG	1 cut(s)	246
MwoI	GCNNNNNNNGC	4 cut(s)	106, 207, 320, 549
NciI	CCSGG	6 cut(s)	82, 102, 152, 183, 203, 230
NdeII	GATC	6 cut(s)	9, 25, 43, 113, 454, 529
NlaIII	CATG	4 cut(s)	55, 344, 515, 536
NlaIV	GGNNCC	4 cut(s)	99, 149, 384, 542
NmuCI	GTSAC	2 cut(s)	250, 275
NspI	RCATGY	1 cut(s)	515
PaeI	GCATGC	1 cut(s)	515
Pfl23II	CGTACG	1 cut(s)	92
PkrI	GCNGC	2 cut(s)	131, 134
PleI	GAGTC	1 cut(s)	443
PpsI	GAGTC	1 cut(s)	443
PspLI	CGTACG	1 cut(s)	92
PspN4I	GGNNCC	4 cut(s)	99, 149, 384, 542
PspPI	GGNCC	1 cut(s)	48
RsaI	GTAC	2 cut(s)	94, 339
RsaNI	GTAC	2 cut(s)	93, 338
RseI	CAYNNNNRTG	2 cut(s)	33, 374
SatI	GCNGC	2 cut(s)	130, 133
Sau3AI	GATC	6 cut(s)	9, 25, 43, 113, 454, 529
Sau96I	GGNCC	1 cut(s)	48
SchI	GAGTC	1 cut(s)	443
ScrFI	CCNGG	6 cut(s)	82, 102, 152, 183, 203, 230
SduI	GDGCHC	1 cut(s)	545
SetI	ASST	5 cut(s)	146, 162, 282, 414, 542
SmiMI	CAYNNNNRTG	2 cut(s)	33, 374
SphI	GCATGC	1 cut(s)	515
Sse9I	AATT	2 cut(s)	246, 485
SsiI	CCGC	3 cut(s)	132, 135, 166
SspI	AATATT	1 cut(s)	300
StyD4I	CCNGG	6 cut(s)	80, 100, 150, 181, 201, 228
TaaI	ACNGT	1 cut(s)	382
TaiI	ACGT	1 cut(s)	282
TaqI	TCGA	1 cut(s)	112
TasI	AATT	2 cut(s)	246, 485
TauI	GCSGC	1 cut(s)	135
TscAI	CASTG	1 cut(s)	481
TseFI	GTSAC	2 cut(s)	250, 275
TseI	GCWGC	1 cut(s)	129
Tsp45I	GTSAC	2 cut(s)	250, 275
TspGWI	ACGGA	5 cut(s)	66, 106, 110, 263, 387
TspRI	CASTG	1 cut(s)	481
XapI	RAATTY	1 cut(s)	485
XceI	RCATGY	1 cut(s)	515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.