Rh1AG233100

Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Reverse (-)
44328534 .. 44332369
3836 bp
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UTR
Exon/CDS
Intron
Rh1AG233100.1

Sequence Viewer

Length: 492 bp
ATGGTGGCGAATTTCAACGACGTCGGAACCAAGCACGACCTCCCAATGGGCCTGACGGAGAACGACTCTGCCACGTTTCTCTCCACCGGCAACCCCTGCCTCGATCTCTTCTTCCACGTCATCCCAAACACTCCAGGCGACTACCTCACATTTCTTCTGTCTTTGAAGCCCCAAAGATTTTCCTCTGCTGAACTTGCTACGAGGACTGAAGAAGGGGCTACCCACGTCATTGTCACTTCTTATGTATTTAATAATGGGCAAAACCTTGAAAGGCTTAAAGATCTTGTTCGTGTTGTTGGAAAAGAAAGGCTTGTTTTAGACCTTAGCTGTAGAAAGAGGGAAGGTAAATATGCAATTGTCACAGATAGATGGCAAAAGTTCAGTGACGTGTATCTTGACAAGGAAATATTAGACTTCCTTGCCAAGTATGCAGACGAGTTTCTGGTACATGGTGTCGATGTGGAAGGGAAAAAATCACTATCTTCTCTTTGA

Protein Analysis

163

Amino Acids

18.38

Weight (kDa)

5.56

Isoelectric Point (pI)

19.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2828 PF11443 19 - 53 7.5e-06 Domain of unknown function (DUF2828)
His_biosynth PF00977 67 - 159 3.2e-06 Histidine biosynthesis protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 24
AcsI RAATTY 1 cut(s) 10
AcuI CTGAAG 1 cut(s) 228
AcyI GRCGYC 1 cut(s) 21
AfaI GTAC 1 cut(s) 447
AfiI CCNNNNNNNGG 1 cut(s) 46
AflIII ACRYGT 1 cut(s) 387
AgsI TTSAA 3 cut(s) 16, 166, 269
AjiI CACGTC 3 cut(s) 118, 226, 388
AjnI CCWGG 1 cut(s) 133
AluBI AGCT 1 cut(s) 327
AluI AGCT 1 cut(s) 327
AoxI GGCC 1 cut(s) 49
ApoI RAATTY 1 cut(s) 10
AspS9I GGNCC 1 cut(s) 49
BccI CCATC 1 cut(s) 363
BciT130I CCWGG 1 cut(s) 135
BfmI CTRYAG 1 cut(s) 328
BglII AGATCT 1 cut(s) 280
Bme1390I CCNGG 1 cut(s) 135
BmgBI CACGTC 3 cut(s) 118, 226, 388
BmgT120I GGNCC 1 cut(s) 49
BmiI GGNNCC 1 cut(s) 28
BmrFI CCNGG 1 cut(s) 135
BplI GAGNNNNNCTC 2 cut(s) 50, 82
BpmI CTGGAG 1 cut(s) 117
Bpu10I CCTNAGC 1 cut(s) 323
BsaHI GRCGYC 1 cut(s) 21
Bsc4I CCNNNNNNNGG 1 cut(s) 46
Bse118I RCCGGY 1 cut(s) 86
BseBI CCWGG 1 cut(s) 135
BseGI GGATG 1 cut(s) 120
BseLI CCNNNNNNNGG 1 cut(s) 46
BshFI GGCC 1 cut(s) 51
BsiSI CCGG 1 cut(s) 87
BslI CCNNNNNNNGG 1 cut(s) 46
BsnI GGCC 1 cut(s) 51
Bsp143I GATC 2 cut(s) 103, 280
BspANI GGCC 1 cut(s) 51
BspLI GGNNCC 1 cut(s) 28
BsrFI RCCGGY 1 cut(s) 86
BssAI RCCGGY 1 cut(s) 86
BssMI GATC 2 cut(s) 103, 280
BssNI GRCGYC 1 cut(s) 21
Bst2UI CCWGG 1 cut(s) 135
Bst6I CTCTTC 1 cut(s) 113
BstACI GRCGYC 1 cut(s) 21
BstAPI GCANNNNNTGC 1 cut(s) 96
BstDEI CTNAG 1 cut(s) 323
BstF5I GGATG 1 cut(s) 120
BstKTI GATC 2 cut(s) 106, 283
BstMBI GATC 2 cut(s) 103, 280
BstMWI GCNNNNNNNGC 3 cut(s) 96, 194, 428
BstNI CCWGG 1 cut(s) 135
BstSCI CCNGG 1 cut(s) 133
BstSFI CTRYAG 1 cut(s) 328
BstX2I RGATCY 1 cut(s) 280
BstYI RGATCY 1 cut(s) 280
BsuRI GGCC 1 cut(s) 51
BtrI CACGTC 3 cut(s) 118, 226, 388
BtsCI GGATG 1 cut(s) 120
BtsIMutI CAGTG 1 cut(s) 388
Cfr10I RCCGGY 1 cut(s) 86
Cfr13I GGNCC 1 cut(s) 49
Csp6I GTAC 1 cut(s) 446
CviAII CATG 1 cut(s) 449
CviJI RGCY 6 cut(s) 51, 169, 218, 274, 310, 327
CviKI_1 RGCY 6 cut(s) 51, 169, 218, 274, 310, 327
CviQI GTAC 1 cut(s) 446
DdeI CTNAG 1 cut(s) 323
DpnI GATC 2 cut(s) 105, 282
DpnII GATC 2 cut(s) 103, 280
Eam1104I CTCTTC 1 cut(s) 113
EarI CTCTTC 1 cut(s) 113
Eco57I CTGAAG 1 cut(s) 228
EcoRII CCWGG 1 cut(s) 133
FaeI CATG 1 cut(s) 452
FaiI YATR 4 cut(s) 243, 351, 429, 450
FalI AAGNNNNNCTT 2 cut(s) 294, 326
FatI CATG 1 cut(s) 448
FokI GGATG 1 cut(s) 107
GsuI CTGGAG 1 cut(s) 117
HaeIII GGCC 1 cut(s) 51
HapII CCGG 1 cut(s) 87
Hin1I GRCGYC 1 cut(s) 21
Hin1II CATG 1 cut(s) 452
HinfI GANTC 1 cut(s) 65
HpaII CCGG 1 cut(s) 87
Hpy188I TCNGA 1 cut(s) 26
Hpy188III TCNNGA 1 cut(s) 395
Hpy99I CGWCG 2 cut(s) 23, 26
HpyAV CCTTC 3 cut(s) 206, 335, 458
HpyCH4IV ACGT 5 cut(s) 21, 74, 117, 225, 387
HpyCH4V TGCA 2 cut(s) 353, 431
HpyF10VI GCNNNNNNNGC 3 cut(s) 96, 194, 428
HpyF3I CTNAG 1 cut(s) 323
HpySE526I ACGT 5 cut(s) 21, 74, 117, 225, 387
Hsp92I GRCGYC 1 cut(s) 21
Hsp92II CATG 1 cut(s) 452
Kzo9I GATC 2 cut(s) 103, 280
LpnPI CCDG 6 cut(s) 65, 100, 109, 120, 147, 428
MaeII ACGT 5 cut(s) 21, 74, 117, 225, 387
MaeIII GTNAC 3 cut(s) 232, 358, 383
MalI GATC 2 cut(s) 105, 282
MboI GATC 2 cut(s) 103, 280
MboII GAAGA 5 cut(s) 100, 103, 146, 221, 474
MfeI CAATTG 1 cut(s) 354
MflI RGATCY 1 cut(s) 280
MluCI AATT 2 cut(s) 10, 354
MlyI GAGTC 1 cut(s) 59
MmeI TCCRAC 2 cut(s) 4, 277
MnlI CCTC 6 cut(s) 50, 110, 155, 193, 195, 330
MseI TTAA 2 cut(s) 249, 276
MspI CCGG 1 cut(s) 87
MspR9I CCNGG 1 cut(s) 135
MunI CAATTG 1 cut(s) 354
MvaI CCWGG 1 cut(s) 135
MwoI GCNNNNNNNGC 3 cut(s) 96, 194, 428
NdeII GATC 2 cut(s) 103, 280
NlaIII CATG 1 cut(s) 452
NlaIV GGNNCC 1 cut(s) 28
NmuCI GTSAC 3 cut(s) 232, 358, 383
PleI GAGTC 1 cut(s) 59
PpsI GAGTC 1 cut(s) 59
Psp6I CCWGG 1 cut(s) 133
PspGI CCWGG 1 cut(s) 133
PspN4I GGNNCC 1 cut(s) 28
PspPI GGNCC 1 cut(s) 49
PsuI RGATCY 1 cut(s) 280
RsaI GTAC 1 cut(s) 447
RsaNI GTAC 1 cut(s) 446
SaqAI TTAA 2 cut(s) 249, 276
Sau3AI GATC 2 cut(s) 103, 280
Sau96I GGNCC 1 cut(s) 49
SchI GAGTC 1 cut(s) 59
ScrFI CCNGG 1 cut(s) 135
SfcI CTRYAG 1 cut(s) 328
Sse9I AATT 2 cut(s) 10, 354
SspI AATATT 1 cut(s) 408
StyD4I CCNGG 1 cut(s) 133
TaiI ACGT 5 cut(s) 24, 77, 120, 228, 390
TaqI TCGA 2 cut(s) 102, 456
TasI AATT 2 cut(s) 10, 354
Tru1I TTAA 2 cut(s) 249, 276
Tru9I TTAA 2 cut(s) 249, 276
TscAI CASTG 1 cut(s) 388
TseFI GTSAC 3 cut(s) 232, 358, 383
Tsp45I GTSAC 3 cut(s) 232, 358, 383
TspGWI ACGGA 1 cut(s) 71
TspRI CASTG 1 cut(s) 388
XapI RAATTY 1 cut(s) 10
ZraI GACGTC 1 cut(s) 22
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.