Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000857

Physical Location & Seq

Genomic Coordinates Reverse (-)

33360160 .. 33361200

Gene Structure 1041 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ38068

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGGGCCAGCTATGGTTACCAATTTCGAGTCAGTTCGAGTCAGATAAGTCGGCGGGGGAGTATGCAAAGATGTATAAGGAAGATGGGCTTACAGGGGGCCATGTTATAATGCTGGGGGCAGATCCTTTGAGTAGAGCTGCGGCCATTGAAGCTCTGCATGCCTATTCTGAGATAGTGGTTCTTGTATACGAAAATACACTTTTGTCTTCGGTTGGTAGTAATATGGCTGGATACAATAGTTGCATTAGATTAAAGATTCTAACTTGCATCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0000162 GO:0003674 GO:0003824 GO:0003949 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

His_biosynth

Protein Analysis

91

Amino Acids

9.83

Weight (kDa)

5.14

Isoelectric Point (pI)

42.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000857)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36230
fragaria_vesca	FvH4_6g18790 FvH4_6g18790 FvH4_6g18790 FvH4_6g18790 FvH4_6g18790 FvH4_6g18790
malus_domestica	MD12G1036500.v1.1 MD14G1023300.v1.1
prunus_persica	Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1
pyrus_communis	pycom12g02400 pycom14g02220 pycom14g02230
rosa_chinensis	RchiOBHm_Chr1g0324901 RchiOBHm_Chr1g0350151 RchiOBHm_Chr3g0473801 RchiOBHm_Chr4g0393091 RchiOBHm_Chr4g0409701 RchiOBHm_Chr5g0027171
rosa_laevigata	RLG00000014193 RLG00000023983 RLG00000035737
rosa_multiflora	Rmu_sc0001207.1_g000028 Rmu_sc0002986.1_g000013 Rmu_sc0007035.1_g000005 Rmu_sc0016122.1_g000001 Rmu_sc0037919.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029230 Rroxscaffold_1G00029310 Rroxscaffold_2G00114250 Rroxscaffold_3G00260930 Rroxscaffold_3G00260940 Rroxscaffold_4G00311820 Rroxscaffold_4G00332560 Rroxscaffold_5G00338520 Rroxscaffold_5G00355640 Rroxscaffold_6G00407790
rosa_rugosa	Rorug01G0107500 Rorug02G0045900 Rorug03G0135600 Rorug06G0225600 Rorug07G0319400 Rorug07G0330900
rosa_samantha	Rh1AG080400 Rh1AG119900 Rh1AG120000 Rh1AG233100 Rh1CG115000 Rh1CG217700 Rh2BG241500 Rh2BG353000 Rh2DG556200 Rh3AG186100 Rh3AG202300 Rh3BG214400 Rh3CG211200 Rh3DG210400 Rh3DG227900 Rh5AG343700 Rh5DG191000
rosa_wichuraiana	Rw1G018100 Rw3G017000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	107
AccI	GTMKAC	1 cut(s)	186
AciI	CCGC	2 cut(s)	53, 140
AclWI	GGATC	1 cut(s)	116
AcoI	YGGCCR	1 cut(s)	141
AgsI	TTSAA	1 cut(s)	149
AluBI	AGCT	3 cut(s)	10, 137, 152
AluI	AGCT	3 cut(s)	10, 137, 152
AlwI	GGATC	1 cut(s)	116
AoxI	GGCC	3 cut(s)	4, 97, 141
ApeKI	GCWGC	1 cut(s)	137
AspS9I	GGNCC	2 cut(s)	4, 97
BaeI	ACNNNNGTAYC	2 cut(s)	223, 256
BbsI	GAAGAC	1 cut(s)	198
BbvI	GCAGC	1 cut(s)	124
BccI	CCATC	1 cut(s)	77
BciVI	GTATCC	1 cut(s)	224
BfuI	GTATCC	1 cut(s)	224
BisI	GCNGC	2 cut(s)	138, 141
BlsI	GCNGC	2 cut(s)	139, 142
BmgT120I	GGNCC	2 cut(s)	4, 97
BmiI	GGNNCC	1 cut(s)	98
BpiI	GAAGAC	1 cut(s)	198
BseMII	CTCAG	1 cut(s)	159
BseXI	GCAGC	1 cut(s)	124
BseYI	CCCAGC	1 cut(s)	112
BshFI	GGCC	3 cut(s)	6, 99, 143
BsnI	GGCC	3 cut(s)	6, 99, 143
Bsp143I	GATC	1 cut(s)	121
BspACI	CCGC	2 cut(s)	53, 140
BspANI	GGCC	3 cut(s)	6, 99, 143
BspCNI	CTCAG	1 cut(s)	160
BspLI	GGNNCC	1 cut(s)	98
BspPI	GGATC	1 cut(s)	116
BssMI	GATC	1 cut(s)	121
BssNAI	GTATAC	1 cut(s)	187
Bst1107I	GTATAC	1 cut(s)	187
BstC8I	GCNNGC	2 cut(s)	8, 159
BstDEI	CTNAG	1 cut(s)	168
BstEII	GGTNACC	1 cut(s)	15
BstKTI	GATC	1 cut(s)	124
BstMBI	GATC	1 cut(s)	121
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 158
BstNSI	RCATGY	1 cut(s)	161
BstPI	GGTNACC	1 cut(s)	15
BstV1I	GCAGC	1 cut(s)	124
BstV2I	GAAGAC	1 cut(s)	198
BstX2I	RGATCY	1 cut(s)	121
BstYI	RGATCY	1 cut(s)	121
BstZ17I	GTATAC	1 cut(s)	187
BsuI	GTATCC	1 cut(s)	224
BsuRI	GGCC	3 cut(s)	6, 99, 143
Cac8I	GCNNGC	2 cut(s)	8, 159
Cfr13I	GGNCC	2 cut(s)	4, 97
CviAII	CATG	2 cut(s)	101, 158
CviJI	RGCY	8 cut(s)	6, 10, 88, 99, 137, 143, 152, 227
CviKI_1	RGCY	8 cut(s)	6, 10, 88, 99, 137, 143, 152, 227
DdeI	CTNAG	1 cut(s)	168
DpnI	GATC	1 cut(s)	123
DpnII	GATC	1 cut(s)	121
EaeI	YGGCCR	1 cut(s)	141
Eco91I	GGTNACC	1 cut(s)	15
EcoO65I	GGTNACC	1 cut(s)	15
FaeI	CATG	2 cut(s)	104, 161
FaiI	YATR	8 cut(s)	13, 63, 75, 102, 107, 159, 187, 224
FalI	AAGNNNNNCTT	2 cut(s)	72, 104
FatI	CATG	2 cut(s)	100, 157
FauI	CCCGC	1 cut(s)	46
FblI	GTMKAC	1 cut(s)	186
Fnu4HI	GCNGC	2 cut(s)	138, 141
Fsp4HI	GCNGC	2 cut(s)	138, 141
GluI	GCNGC	2 cut(s)	138, 141
GsaI	CCCAGC	1 cut(s)	116
HaeIII	GGCC	3 cut(s)	6, 99, 143
Hin1II	CATG	2 cut(s)	104, 161
HinfI	GANTC	3 cut(s)	28, 38, 256
Hpy166II	GTNNAC	1 cut(s)	187
Hpy188I	TCNGA	2 cut(s)	43, 169
Hpy8I	GTNNAC	1 cut(s)	187
HpyCH4V	TGCA	4 cut(s)	65, 157, 243, 267
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 158
HpyF3I	CTNAG	1 cut(s)	168
Hsp92II	CATG	2 cut(s)	104, 161
Kzo9I	GATC	1 cut(s)	121
LpnPI	CCDG	4 cut(s)	20, 78, 98, 213
Lsp1109I	GCAGC	1 cut(s)	124
MaeIII	GTNAC	1 cut(s)	15
MalI	GATC	1 cut(s)	123
MboI	GATC	1 cut(s)	121
MboII	GAAGA	2 cut(s)	92, 198
MflI	RGATCY	1 cut(s)	121
MluCI	AATT	2 cut(s)	21, 271
MlyI	GAGTC	2 cut(s)	37, 47
MseI	TTAA	1 cut(s)	251
MwoI	GCNNNNNNNGC	2 cut(s)	149, 158
NdeII	GATC	1 cut(s)	121
NlaIII	CATG	2 cut(s)	104, 161
NlaIV	GGNNCC	1 cut(s)	98
NspI	RCATGY	1 cut(s)	161
PaeI	GCATGC	1 cut(s)	161
PfeI	GAWTC	1 cut(s)	256
PkrI	GCNGC	2 cut(s)	139, 142
PleI	GAGTC	2 cut(s)	36, 46
PpsI	GAGTC	2 cut(s)	36, 46
PsiI	TTATAA	1 cut(s)	107
PspEI	GGTNACC	1 cut(s)	15
PspFI	CCCAGC	1 cut(s)	112
PspN4I	GGNNCC	1 cut(s)	98
PspPI	GGNCC	2 cut(s)	4, 97
PsuI	RGATCY	1 cut(s)	121
SaqAI	TTAA	1 cut(s)	251
SatI	GCNGC	2 cut(s)	138, 141
Sau3AI	GATC	1 cut(s)	121
Sau96I	GGNCC	2 cut(s)	4, 97
SchI	GAGTC	2 cut(s)	37, 47
SetI	ASST	3 cut(s)	12, 139, 154
SphI	GCATGC	1 cut(s)	161
Sse9I	AATT	2 cut(s)	21, 271
SsiI	CCGC	2 cut(s)	53, 140
TaqI	TCGA	2 cut(s)	26, 36
TasI	AATT	2 cut(s)	21, 271
TauI	GCSGC	1 cut(s)	143
TfiI	GAWTC	1 cut(s)	256
Tru1I	TTAA	1 cut(s)	251
Tru9I	TTAA	1 cut(s)	251
TseI	GCWGC	1 cut(s)	137
XceI	RCATGY	1 cut(s)	161
XmiI	GTMKAC	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.