Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000857

Physical Location & Seq

Genomic Coordinates Forward (+)

21199739 .. 21204013

Gene Structure 4275 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG191000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGGTCTAGGCCATATGCAACGTTCAGGGCAAGTAAAACAGATTGTTGGGTCGACGCTTTGGGATCCGAGGGAATATGGGCCTTCTTTGGATACCAATTTCAAGTCGGATAAGTCGGTGGGGGAGTATGCAAAGATGTATAAGGAAAATGGGCTTACAGGTGGCCATGTGATAATGCTGGGGGTAGATCCTTTGAGTAGAGCTGTGGTCATTGAAAATCTGCATGCCTGTCCTGGTGGTTTGCAGGTAGGAGGTGGGATCAATTCAGATAATTCTTTGCAATACATAGAAGAAGGGGCTAGCCACGTCATTGTCACTTCTTATGTATTTAATAATGGGCAAATGGACCTTGAAAGGCTTAAAGATCTTGTTCGTATTGTTGGAAAAGAAAGGCTTGTTTTAGACCTTAGCTGTAGAAAGAGGGTTAGTATTCCACCTAGAGTTAAGGTTTCTGAGGTTGAGGAAAGAGTAAAAGATGGGTCCTTTAGGACGAACCACATATCATCCACAACCTTCAGGAAATCTCAAAATGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0000162 GO:0003674 GO:0003824 GO:0003949 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

His_biosynth

Protein Analysis

178

Amino Acids

19.63

Weight (kDa)

8.89

Isoelectric Point (pI)

33.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
His_biosynth	PF00977	32 - 155	3.4e-09	Histidine biosynthesis protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000857)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36230
fragaria_vesca	FvH4_6g18790 FvH4_6g18790 FvH4_6g18790 FvH4_6g18790 FvH4_6g18790 FvH4_6g18790
malus_domestica	MD12G1036500.v1.1 MD14G1023300.v1.1
prunus_persica	Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1
pyrus_communis	pycom12g02400 pycom14g02220 pycom14g02230
rosa_chinensis	RchiOBHm_Chr1g0324901 RchiOBHm_Chr1g0350151 RchiOBHm_Chr3g0473801 RchiOBHm_Chr4g0393091 RchiOBHm_Chr4g0409701 RchiOBHm_Chr5g0027171
rosa_laevigata	RLG00000014193 RLG00000023983 RLG00000035737
rosa_multiflora	Rmu_sc0001207.1_g000028 Rmu_sc0002986.1_g000013 Rmu_sc0007035.1_g000005 Rmu_sc0016122.1_g000001 Rmu_sc0037919.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029230 Rroxscaffold_1G00029310 Rroxscaffold_2G00114250 Rroxscaffold_3G00260930 Rroxscaffold_3G00260940 Rroxscaffold_4G00311820 Rroxscaffold_4G00332560 Rroxscaffold_5G00338520 Rroxscaffold_5G00355640 Rroxscaffold_6G00407790
rosa_rugosa	Rorug01G0107500 Rorug02G0045900 Rorug03G0135600 Rorug06G0225600 Rorug07G0319400 Rorug07G0330900
rosa_samantha	Rh1AG080400 Rh1AG119900 Rh1AG120000 Rh1AG233100 Rh1CG115000 Rh1CG217700 Rh2BG241500 Rh2BG353000 Rh2DG556200 Rh3AG186100 Rh3AG202300 Rh3BG214400 Rh3CG211200 Rh3DG210400 Rh3DG227900 Rh5AG343700 Rh5DG191000
rosa_wichuraiana	Rw1G018100 Rw3G017000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	235
AccI	GTMKAC	1 cut(s)	53
AclI	AACGTT	1 cut(s)	22
AclWI	GGATC	4 cut(s)	59, 72, 182, 266
AcoI	YGGCCR	1 cut(s)	163
AcuI	CTGAAG	1 cut(s)	499
AgsI	TTSAA	3 cut(s)	103, 215, 353
AjiI	CACGTC	1 cut(s)	307
AjnI	CCWGG	1 cut(s)	232
AluBI	AGCT	2 cut(s)	203, 411
AluI	AGCT	2 cut(s)	203, 411
AlwI	GGATC	4 cut(s)	59, 72, 182, 266
AoxI	GGCC	3 cut(s)	10, 80, 163
AspS9I	GGNCC	3 cut(s)	80, 346, 480
AsuNHI	GCTAGC	1 cut(s)	299
AvaII	GGWCC	2 cut(s)	346, 480
BalI	TGGCCA	1 cut(s)	165
BamHI	GGATCC	1 cut(s)	64
BccI	CCATC	1 cut(s)	470
BciT130I	CCWGG	1 cut(s)	234
BciVI	GTATCC	1 cut(s)	85
BfaI	CTAG	3 cut(s)	8, 300, 438
BfmI	CTRYAG	1 cut(s)	412
BfuAI	ACCTGC	1 cut(s)	235
BfuI	GTATCC	1 cut(s)	85
BglII	AGATCT	1 cut(s)	364
Bme1390I	CCNGG	1 cut(s)	234
Bme18I	GGWCC	2 cut(s)	346, 480
BmgBI	CACGTC	1 cut(s)	307
BmgT120I	GGNCC	3 cut(s)	80, 346, 480
BmiI	GGNNCC	2 cut(s)	66, 481
BmrFI	CCNGG	1 cut(s)	234
BmtI	GCTAGC	1 cut(s)	303
Bpu10I	CCTNAGC	1 cut(s)	407
BsaJI	CCNNGG	1 cut(s)	68
BseBI	CCWGG	1 cut(s)	234
BseDI	CCNNGG	1 cut(s)	68
BseGI	GGATG	1 cut(s)	503
BseMII	CTCAG	1 cut(s)	444
BseYI	CCCAGC	1 cut(s)	178
BshFI	GGCC	3 cut(s)	12, 82, 165
BsnI	GGCC	3 cut(s)	12, 82, 165
Bsp143I	GATC	4 cut(s)	64, 187, 258, 364
BspANI	GGCC	3 cut(s)	12, 82, 165
BspCNI	CTCAG	1 cut(s)	445
BspLI	GGNNCC	2 cut(s)	66, 481
BspMI	ACCTGC	1 cut(s)	235
BspOI	GCTAGC	1 cut(s)	303
BspPI	GGATC	4 cut(s)	59, 72, 182, 266
BssECI	CCNNGG	1 cut(s)	68
BssMI	GATC	4 cut(s)	64, 187, 258, 364
Bst2UI	CCWGG	1 cut(s)	234
BstC8I	GCNNGC	2 cut(s)	225, 301
BstDEI	CTNAG	2 cut(s)	407, 453
BstF5I	GGATG	1 cut(s)	503
BstKTI	GATC	4 cut(s)	67, 190, 261, 367
BstMBI	GATC	4 cut(s)	64, 187, 258, 364
BstNI	CCWGG	1 cut(s)	234
BstNSI	RCATGY	1 cut(s)	227
BstSCI	CCNGG	1 cut(s)	232
BstSFI	CTRYAG	1 cut(s)	412
BstX2I	RGATCY	3 cut(s)	64, 187, 364
BstYI	RGATCY	3 cut(s)	64, 187, 364
BsuI	GTATCC	1 cut(s)	85
BsuRI	GGCC	3 cut(s)	12, 82, 165
BtrI	CACGTC	1 cut(s)	307
BtsCI	GGATG	1 cut(s)	503
BveI	ACCTGC	1 cut(s)	235
Cac8I	GCNNGC	2 cut(s)	225, 301
Cfr13I	GGNCC	3 cut(s)	80, 346, 480
CseI	GACGC	1 cut(s)	64
CviAII	CATG	2 cut(s)	167, 224
DdeI	CTNAG	2 cut(s)	407, 453
DpnI	GATC	4 cut(s)	66, 189, 260, 366
DpnII	GATC	4 cut(s)	64, 187, 258, 364
EaeI	YGGCCR	1 cut(s)	163
Eco47I	GGWCC	2 cut(s)	346, 480
Eco57I	CTGAAG	1 cut(s)	499
EcoO109I	RGGNCCY	1 cut(s)	480
EcoRII	CCWGG	1 cut(s)	232
EcoT22I	ATGCAT	1 cut(s)	535
FaeI	CATG	2 cut(s)	170, 227
FalI	AAGNNNNNCTT	2 cut(s)	378, 410
FatI	CATG	2 cut(s)	166, 223
FauNDI	CATATG	1 cut(s)	15
FblI	GTMKAC	1 cut(s)	53
FokI	GGATG	1 cut(s)	490
FspBI	CTAG	3 cut(s)	8, 300, 438
GsaI	CCCAGC	1 cut(s)	182
HaeIII	GGCC	3 cut(s)	12, 82, 165
HgaI	GACGC	1 cut(s)	64
Hin1II	CATG	2 cut(s)	170, 227
HincII	GTYRAC	1 cut(s)	54
HindII	GTYRAC	1 cut(s)	54
Hpy166II	GTNNAC	1 cut(s)	54
Hpy188I	TCNGA	4 cut(s)	69, 109, 268, 454
Hpy188III	TCNNGA	1 cut(s)	517
Hpy8I	GTNNAC	1 cut(s)	54
Hpy99I	CGWCG	1 cut(s)	58
HpyAV	CCTTC	3 cut(s)	93, 287, 523
HpyCH4IV	ACGT	2 cut(s)	22, 306
HpyCH4V	TGCA	6 cut(s)	19, 131, 223, 244, 280, 533
HpyF3I	CTNAG	2 cut(s)	407, 453
HpySE526I	ACGT	2 cut(s)	22, 306
Hsp92II	CATG	2 cut(s)	170, 227
Kzo9I	GATC	4 cut(s)	64, 187, 258, 364
LpnPI	CCDG	8 cut(s)	12, 144, 164, 219, 230, 241, 246, 502
MaeI	CTAG	3 cut(s)	8, 300, 438
MaeII	ACGT	2 cut(s)	22, 306
MaeIII	GTNAC	1 cut(s)	313
MalI	GATC	4 cut(s)	66, 189, 260, 366
MboI	GATC	4 cut(s)	64, 187, 258, 364
MboII	GAAGA	1 cut(s)	302
MflI	RGATCY	3 cut(s)	64, 187, 364
MlsI	TGGCCA	1 cut(s)	165
MluCI	AATT	3 cut(s)	97, 262, 271
MluNI	TGGCCA	1 cut(s)	165
MmeI	TCCRAC	2 cut(s)	87, 361
MnlI	CCTC	5 cut(s)	63, 245, 414, 448, 454
Mox20I	TGGCCA	1 cut(s)	165
Mph1103I	ATGCAT	1 cut(s)	535
MscI	TGGCCA	1 cut(s)	165
MseI	TTAA	3 cut(s)	330, 360, 444
Msp20I	TGGCCA	1 cut(s)	165
MspR9I	CCNGG	1 cut(s)	234
MvaI	CCWGG	1 cut(s)	234
NdeI	CATATG	1 cut(s)	15
NdeII	GATC	4 cut(s)	64, 187, 258, 364
NheI	GCTAGC	1 cut(s)	299
NlaIII	CATG	2 cut(s)	170, 227
NlaIV	GGNNCC	2 cut(s)	66, 481
NmuCI	GTSAC	1 cut(s)	313
NsiI	ATGCAT	1 cut(s)	535
NspI	RCATGY	1 cut(s)	227
PaeI	GCATGC	1 cut(s)	227
PpuMI	RGGWCCY	1 cut(s)	480
Psp1406I	AACGTT	1 cut(s)	22
Psp5II	RGGWCCY	1 cut(s)	480
Psp6I	CCWGG	1 cut(s)	232
PspFI	CCCAGC	1 cut(s)	178
PspGI	CCWGG	1 cut(s)	232
PspN4I	GGNNCC	2 cut(s)	66, 481
PspPI	GGNCC	3 cut(s)	80, 346, 480
PspPPI	RGGWCCY	1 cut(s)	480
PsuI	RGATCY	3 cut(s)	64, 187, 364
SalI	GTCGAC	1 cut(s)	52
SaqAI	TTAA	3 cut(s)	330, 360, 444
Sau3AI	GATC	4 cut(s)	64, 187, 258, 364
Sau96I	GGNCC	3 cut(s)	80, 346, 480
ScrFI	CCNGG	1 cut(s)	234
SfcI	CTRYAG	1 cut(s)	412
SinI	GGWCC	2 cut(s)	346, 480
SphI	GCATGC	1 cut(s)	227
Sse9I	AATT	3 cut(s)	97, 262, 271
SspMI	CTAG	3 cut(s)	8, 300, 438
StyD4I	CCNGG	1 cut(s)	232
TaiI	ACGT	2 cut(s)	25, 309
TaqI	TCGA	1 cut(s)	53
TasI	AATT	3 cut(s)	97, 262, 271
Tru1I	TTAA	3 cut(s)	330, 360, 444
Tru9I	TTAA	3 cut(s)	330, 360, 444
TseFI	GTSAC	1 cut(s)	313
Tsp45I	GTSAC	1 cut(s)	313
VpaK11BI	GGWCC	2 cut(s)	346, 480
XceI	RCATGY	1 cut(s)	227
XmiI	GTMKAC	1 cut(s)	53
XspI	CTAG	3 cut(s)	8, 300, 438
Zsp2I	ATGCAT	1 cut(s)	535

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.