Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0000857

Physical Location & Seq

Genomic Coordinates Forward (+)

18339038 .. 18345936

Gene Structure 6899 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G017000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGAGAGTTGAGAGCCTCGGTTCTTCTTTGGGTTCCGAGTTCAGTAGAGTTTTTCAGAGCAGCTCTTCGATTTTCGGTACAAAGAAGCTTTATGGGTGTAGGCCATCTGCAACATTCAGGTTTAGGCGAGTACCCATTTGCTGTGCTGTTCGTTTCCGACCCTGCATTGATATACACAAGGGGAAAGTGAAACAGATTGTTGGGTCGACGCTTTCGGATTCGAAGGAAGATGGGCCTGCGCTGGTTACCAATTTTGAGTCGGATAAGTCGGCTGGGGAGTATGCAAAGATGTATAAGGAAGATGGGCTTCCAGGTGGCCATGTGATAATGCTGGGAGCAGACCCTTTGAGTAGAGCTGCGGCCATTGAAGCTCTGCATGCCTATCCTGGTGGTTTGCAAGTAGGAGGTGGGATCAATTCAGATAATTCTTTGCAGTACATAGAAGAAGGGGCTAGCCACGTCATTGTCACTTCTTATGTATTTAATAATGGGCAAATGGACCTTGAAAGGCTTGAAGATCTTGTTCGTGTTGTTGGAAAAGAAAGGCTTGTTTTAGACCTTAGCTGCAGAAAGAGGGAAGGTAAATATGCAATTGTAACTGATAGATGGCAAAAGTTCAGTGATGTGTATCTTGACAAGAAAATATTAGACTTCCTTGCCAAGTACGCAGATGAGTTTCTGGTACATGGTGTCGATGTTGAAGGGAAAAAACTGGGGATTGATGAAGAGCTTGTGGAGTTGCTTGGCAAACATTCTCCGATTCCTGTAACTTATGCTGGTGGTGTCACAGTAATGGCTGATTTAGAGAGGATAAAAGTGGCAGGGCTAGGACATGTGGATGTTACTGTCGGCAGCGCTTTGGATGTTTTCGGGGGCAACTTGCCATACAAAGAAGTCGTTGCTTGGCATACTCAGCAGGAAGCATTGACTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0000162 GO:0003674 GO:0003824 GO:0003949 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

His_biosynth

Protein Analysis

311

Amino Acids

33.99

Weight (kDa)

6.09

Isoelectric Point (pI)

36.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
His_biosynth	PF00977	54 - 287	2.3e-28	Histidine biosynthesis protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000857)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36230
fragaria_vesca	FvH4_6g18790 FvH4_6g18790 FvH4_6g18790 FvH4_6g18790 FvH4_6g18790 FvH4_6g18790
malus_domestica	MD12G1036500.v1.1 MD14G1023300.v1.1
prunus_persica	Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1
pyrus_communis	pycom12g02400 pycom14g02220 pycom14g02230
rosa_chinensis	RchiOBHm_Chr1g0324901 RchiOBHm_Chr1g0350151 RchiOBHm_Chr3g0473801 RchiOBHm_Chr4g0393091 RchiOBHm_Chr4g0409701 RchiOBHm_Chr5g0027171
rosa_laevigata	RLG00000014193 RLG00000023983 RLG00000035737
rosa_multiflora	Rmu_sc0001207.1_g000028 Rmu_sc0002986.1_g000013 Rmu_sc0007035.1_g000005 Rmu_sc0016122.1_g000001 Rmu_sc0037919.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029230 Rroxscaffold_1G00029310 Rroxscaffold_2G00114250 Rroxscaffold_3G00260930 Rroxscaffold_3G00260940 Rroxscaffold_4G00311820 Rroxscaffold_4G00332560 Rroxscaffold_5G00338520 Rroxscaffold_5G00355640 Rroxscaffold_6G00407790
rosa_rugosa	Rorug01G0107500 Rorug02G0045900 Rorug03G0135600 Rorug06G0225600 Rorug07G0319400 Rorug07G0330900
rosa_samantha	Rh1AG080400 Rh1AG119900 Rh1AG120000 Rh1AG233100 Rh1CG115000 Rh1CG217700 Rh2BG241500 Rh2BG353000 Rh2DG556200 Rh3AG186100 Rh3AG202300 Rh3BG214400 Rh3CG211200 Rh3DG210400 Rh3DG227900 Rh5AG343700 Rh5DG191000
rosa_wichuraiana	Rw1G018100 Rw3G017000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	206
AciI	CCGC	1 cut(s)	359
AclWI	GGATC	1 cut(s)	419
AcoI	YGGCCR	2 cut(s)	316, 360
AfaI	GTAC	5 cut(s)	79, 132, 437, 665, 684
AfeI	AGCGCT	1 cut(s)	856
AflIII	ACRYGT	1 cut(s)	832
AgsI	TTSAA	4 cut(s)	368, 506, 515, 701
AjiI	CACGTC	1 cut(s)	460
AjnI	CCWGG	2 cut(s)	310, 385
AluBI	AGCT	6 cut(s)	63, 88, 356, 371, 564, 730
AluI	AGCT	6 cut(s)	63, 88, 356, 371, 564, 730
AlwI	GGATC	1 cut(s)	419
Aor51HI	AGCGCT	1 cut(s)	856
AoxI	GGCC	4 cut(s)	101, 233, 316, 360
ApeKI	GCWGC	4 cut(s)	60, 356, 564, 852
AspLEI	GCGC	2 cut(s)	241, 857
AspS9I	GGNCC	2 cut(s)	233, 499
AsuII	TTCGAA	1 cut(s)	221
AsuNHI	GCTAGC	1 cut(s)	452
AvaII	GGWCC	1 cut(s)	499
BalI	TGGCCA	1 cut(s)	318
BbvI	GCAGC	4 cut(s)	72, 343, 551, 864
BccI	CCATC	4 cut(s)	112, 224, 296, 600
BciT130I	CCWGG	2 cut(s)	312, 387
BfaI	CTAG	2 cut(s)	453, 827
BfmI	CTRYAG	1 cut(s)	565
BfoI	RGCGCY	1 cut(s)	858
BglII	AGATCT	1 cut(s)	517
BisI	GCNGC	5 cut(s)	61, 357, 360, 565, 853
BlsI	GCNGC	5 cut(s)	62, 358, 361, 566, 854
Bme1390I	CCNGG	2 cut(s)	312, 387
Bme18I	GGWCC	1 cut(s)	499
BmgBI	CACGTC	1 cut(s)	460
BmgT120I	GGNCC	2 cut(s)	233, 499
BmiI	GGNNCC	1 cut(s)	34
BmrFI	CCNGG	2 cut(s)	312, 387
BmrI	ACTGGG	1 cut(s)	722
BmtI	GCTAGC	1 cut(s)	456
BmuI	ACTGGG	1 cut(s)	722
Bpu10I	CCTNAGC	1 cut(s)	560
Bpu14I	TTCGAA	1 cut(s)	221
BsaBI	GATNNNNATC	1 cut(s)	627
BsaJI	CCNNGG	1 cut(s)	16
Bse1I	ACTGG	1 cut(s)	717
Bse8I	GATNNNNATC	1 cut(s)	627
BseBI	CCWGG	2 cut(s)	312, 387
BseDI	CCNNGG	1 cut(s)	16
BseGI	GGATG	2 cut(s)	844, 868
BseJI	GATNNNNATC	1 cut(s)	627
BseMII	CTCAG	1 cut(s)	926
BseNI	ACTGG	1 cut(s)	717
BseXI	GCAGC	4 cut(s)	72, 343, 551, 864
BseYI	CCCAGC	2 cut(s)	272, 331
BshFI	GGCC	4 cut(s)	103, 235, 318, 362
BsnI	GGCC	4 cut(s)	103, 235, 318, 362
Bsp119I	TTCGAA	1 cut(s)	221
Bsp143I	GATC	2 cut(s)	411, 517
BspACI	CCGC	1 cut(s)	359
BspANI	GGCC	4 cut(s)	103, 235, 318, 362
BspCNI	CTCAG	1 cut(s)	925
BspLI	GGNNCC	1 cut(s)	34
BspMAI	CTGCAG	1 cut(s)	569
BspOI	GCTAGC	1 cut(s)	456
BspPI	GGATC	1 cut(s)	419
BspQI	GCTCTTC	2 cut(s)	70, 720
BspT104I	TTCGAA	1 cut(s)	221
BsrI	ACTGG	1 cut(s)	717
BssECI	CCNNGG	1 cut(s)	16
BssMI	GATC	2 cut(s)	411, 517
Bst2UI	CCWGG	2 cut(s)	312, 387
Bst4CI	ACNGT	3 cut(s)	790, 847, 931
Bst6I	CTCTTC	2 cut(s)	70, 720
BstBI	TTCGAA	1 cut(s)	221
BstC8I	GCNNGC	3 cut(s)	237, 378, 454
BstDEI	CTNAG	2 cut(s)	560, 912
BstEII	GGTNACC	1 cut(s)	244
BstF5I	GGATG	2 cut(s)	844, 868
BstH2I	RGCGCY	1 cut(s)	858
BstHHI	GCGC	2 cut(s)	241, 857
BstKTI	GATC	2 cut(s)	414, 520
BstMBI	GATC	2 cut(s)	411, 517
BstMWI	GCNNNNNNNGC	4 cut(s)	368, 377, 665, 913
BstNI	CCWGG	2 cut(s)	312, 387
BstNSI	RCATGY	2 cut(s)	380, 836
BstPI	GGTNACC	1 cut(s)	244
BstSCI	CCNGG	2 cut(s)	310, 385
BstSFI	CTRYAG	1 cut(s)	565
BstV1I	GCAGC	4 cut(s)	72, 343, 551, 864
BstX2I	RGATCY	1 cut(s)	517
BstYI	RGATCY	1 cut(s)	517
BsuRI	GGCC	4 cut(s)	103, 235, 318, 362
BtrI	CACGTC	1 cut(s)	460
BtsCI	GGATG	2 cut(s)	844, 868
BtsIMutI	CAGTG	1 cut(s)	625
Cac8I	GCNNGC	3 cut(s)	237, 378, 454
CfoI	GCGC	2 cut(s)	241, 857
Cfr13I	GGNCC	2 cut(s)	233, 499
CseI	GACGC	1 cut(s)	217
Csp6I	GTAC	5 cut(s)	78, 131, 436, 664, 683
CviAII	CATG	4 cut(s)	320, 377, 686, 833
CviQI	GTAC	5 cut(s)	78, 131, 436, 664, 683
DdeI	CTNAG	2 cut(s)	560, 912
DpnI	GATC	2 cut(s)	413, 519
DpnII	GATC	2 cut(s)	411, 517
EaeI	YGGCCR	2 cut(s)	316, 360
Eam1104I	CTCTTC	2 cut(s)	70, 720
EarI	CTCTTC	2 cut(s)	70, 720
Eco47I	GGWCC	1 cut(s)	499
Eco47III	AGCGCT	1 cut(s)	856
Eco91I	GGTNACC	1 cut(s)	244
EcoO65I	GGTNACC	1 cut(s)	244
EcoRII	CCWGG	2 cut(s)	310, 385
FaeI	CATG	4 cut(s)	323, 380, 689, 836
FalI	AAGNNNNNCTT	4 cut(s)	291, 323, 531, 563
FatI	CATG	4 cut(s)	319, 376, 685, 832
FblI	GTMKAC	1 cut(s)	206
Fnu4HI	GCNGC	5 cut(s)	61, 357, 360, 565, 853
FokI	GGATG	2 cut(s)	851, 875
Fsp4HI	GCNGC	5 cut(s)	61, 357, 360, 565, 853
FspBI	CTAG	2 cut(s)	453, 827
GlaI	GCGC	2 cut(s)	240, 856
GluI	GCNGC	5 cut(s)	61, 357, 360, 565, 853
GsaI	CCCAGC	2 cut(s)	276, 335
HaeII	RGCGCY	1 cut(s)	858
HaeIII	GGCC	4 cut(s)	103, 235, 318, 362
HgaI	GACGC	1 cut(s)	217
HhaI	GCGC	2 cut(s)	241, 857
Hin1II	CATG	4 cut(s)	323, 380, 689, 836
Hin6I	GCGC	2 cut(s)	239, 855
HinP1I	GCGC	2 cut(s)	239, 855
HincII	GTYRAC	1 cut(s)	207
HindII	GTYRAC	1 cut(s)	207
HindIII	AAGCTT	1 cut(s)	86
HinfI	GANTC	3 cut(s)	218, 257, 760
Hpy166II	GTNNAC	1 cut(s)	207
Hpy188I	TCNGA	7 cut(s)	37, 57, 158, 217, 262, 421, 759
Hpy188III	TCNNGA	1 cut(s)	632
Hpy8I	GTNNAC	1 cut(s)	207
Hpy99I	CGWCG	1 cut(s)	211
HpyAV	CCTTC	4 cut(s)	217, 440, 572, 695
HpyCH4III	ACNGT	3 cut(s)	790, 847, 931
HpyCH4IV	ACGT	1 cut(s)	459
HpyCH4V	TGCA	8 cut(s)	110, 165, 284, 376, 397, 433, 567, 590
HpyF10VI	GCNNNNNNNGC	4 cut(s)	368, 377, 665, 913
HpyF3I	CTNAG	2 cut(s)	560, 912
HpySE526I	ACGT	1 cut(s)	459
Hsp92II	CATG	4 cut(s)	323, 380, 689, 836
HspAI	GCGC	2 cut(s)	239, 855
Kzo9I	GATC	2 cut(s)	411, 517
LguI	GCTCTTC	2 cut(s)	70, 720
LmnI	GCTCC	1 cut(s)	335
Lsp1109I	GCAGC	4 cut(s)	72, 343, 551, 864
MaeI	CTAG	2 cut(s)	453, 827
MaeII	ACGT	1 cut(s)	459
MaeIII	GTNAC	6 cut(s)	244, 466, 595, 766, 784, 841
MalI	GATC	2 cut(s)	413, 519
MboI	GATC	2 cut(s)	411, 517
MboII	GAAGA	7 cut(s)	15, 57, 239, 311, 455, 527, 737
MfeI	CAATTG	1 cut(s)	591
MflI	RGATCY	1 cut(s)	517
MlsI	TGGCCA	1 cut(s)	318
MluCI	AATT	4 cut(s)	250, 415, 424, 591
MluNI	TGGCCA	1 cut(s)	318
MlyI	GAGTC	1 cut(s)	266
MmeI	TCCRAC	3 cut(s)	181, 240, 514
MnlI	CCTC	4 cut(s)	26, 398, 567, 801
Mox20I	TGGCCA	1 cut(s)	318
MscI	TGGCCA	1 cut(s)	318
MseI	TTAA	1 cut(s)	483
MslI	CAYNNNNRTG	2 cut(s)	791, 837
Msp20I	TGGCCA	1 cut(s)	318
MspR9I	CCNGG	2 cut(s)	312, 387
MunI	CAATTG	1 cut(s)	591
MvaI	CCWGG	2 cut(s)	312, 387
MwoI	GCNNNNNNNGC	4 cut(s)	368, 377, 665, 913
NdeII	GATC	2 cut(s)	411, 517
NheI	GCTAGC	1 cut(s)	452
NlaIII	CATG	4 cut(s)	323, 380, 689, 836
NlaIV	GGNNCC	1 cut(s)	34
NmuCI	GTSAC	2 cut(s)	466, 784
NspI	RCATGY	2 cut(s)	380, 836
NspV	TTCGAA	1 cut(s)	221
PaeI	GCATGC	1 cut(s)	380
PciI	ACATGT	1 cut(s)	832
PciSI	GCTCTTC	2 cut(s)	70, 720
PfeI	GAWTC	2 cut(s)	218, 760
PkrI	GCNGC	5 cut(s)	62, 358, 361, 566, 854
PleI	GAGTC	1 cut(s)	265
PpsI	GAGTC	1 cut(s)	265
PscI	ACATGT	1 cut(s)	832
Psp6I	CCWGG	2 cut(s)	310, 385
PspEI	GGTNACC	1 cut(s)	244
PspFI	CCCAGC	2 cut(s)	272, 331
PspGI	CCWGG	2 cut(s)	310, 385
PspN4I	GGNNCC	1 cut(s)	34
PspPI	GGNCC	2 cut(s)	233, 499
PstI	CTGCAG	1 cut(s)	569
PsuI	RGATCY	1 cut(s)	517
RsaI	GTAC	5 cut(s)	79, 132, 437, 665, 684
RsaNI	GTAC	5 cut(s)	78, 131, 436, 664, 683
RseI	CAYNNNNRTG	2 cut(s)	791, 837
SalI	GTCGAC	1 cut(s)	205
SapI	GCTCTTC	2 cut(s)	70, 720
SaqAI	TTAA	1 cut(s)	483
SatI	GCNGC	5 cut(s)	61, 357, 360, 565, 853
Sau3AI	GATC	2 cut(s)	411, 517
Sau96I	GGNCC	2 cut(s)	233, 499
SchI	GAGTC	1 cut(s)	266
ScrFI	CCNGG	2 cut(s)	312, 387
SfcI	CTRYAG	1 cut(s)	565
SfuI	TTCGAA	1 cut(s)	221
SinI	GGWCC	1 cut(s)	499
SmiMI	CAYNNNNRTG	2 cut(s)	791, 837
SphI	GCATGC	1 cut(s)	380
Sse9I	AATT	4 cut(s)	250, 415, 424, 591
SsiI	CCGC	1 cut(s)	359
SspI	AATATT	1 cut(s)	645
SspMI	CTAG	2 cut(s)	453, 827
StyD4I	CCNGG	2 cut(s)	310, 385
TaaI	ACNGT	3 cut(s)	790, 847, 931
TaiI	ACGT	1 cut(s)	462
TaqI	TCGA	4 cut(s)	68, 206, 221, 693
TasI	AATT	4 cut(s)	250, 415, 424, 591
TatI	WGTACW	1 cut(s)	435
TauI	GCSGC	1 cut(s)	362
TfiI	GAWTC	2 cut(s)	218, 760
Tru1I	TTAA	1 cut(s)	483
Tru9I	TTAA	1 cut(s)	483
TscAI	CASTG	1 cut(s)	625
TseFI	GTSAC	2 cut(s)	466, 784
TseI	GCWGC	4 cut(s)	60, 356, 564, 852
Tsp45I	GTSAC	2 cut(s)	466, 784
TspDTI	ATGAA	1 cut(s)	738
TspRI	CASTG	1 cut(s)	625
VpaK11BI	GGWCC	1 cut(s)	499
XceI	RCATGY	2 cut(s)	380, 836
XmiI	GTMKAC	1 cut(s)	206
XspI	CTAG	2 cut(s)	453, 827

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.