Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000857

Physical Location & Seq

Genomic Coordinates Forward (+)

32724319 .. 32724633

Gene Structure 315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0319400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGTATTCCTCGATATTCACATCCTCTCACCTCATGACCCAAGAGCCACGAACTCTGCAACTAATGGAGCTCCAAACCCCGCAACAAATGGAACCACAACAACAGCAACCAACAGAGGAGGGAGGAAACACCCAAGCAGCTGGAAGTAGTGCCAACATGGATTTCTGGCGAAGCCGTACCAGATGGATTCCTACTCCAGAACAAATAAGAATCCTCAAGGATCTTTACTACGTCAAGGGATTTAAGTGCCCATCTACAGAGCACATTCACGAGATCTGCCTCCAGCTGAACCAGTATGGACATGTTGAGGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0000162 GO:0003674 GO:0003824 GO:0003949 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

His_biosynth

Protein Analysis

104

Amino Acids

12.09

Weight (kDa)

5.73

Isoelectric Point (pI)

73.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000857)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36230
fragaria_vesca	FvH4_6g18790 FvH4_6g18790 FvH4_6g18790 FvH4_6g18790 FvH4_6g18790 FvH4_6g18790
malus_domestica	MD12G1036500.v1.1 MD14G1023300.v1.1
prunus_persica	Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1
pyrus_communis	pycom12g02400 pycom14g02220 pycom14g02230
rosa_chinensis	RchiOBHm_Chr1g0324901 RchiOBHm_Chr1g0350151 RchiOBHm_Chr3g0473801 RchiOBHm_Chr4g0393091 RchiOBHm_Chr4g0409701 RchiOBHm_Chr5g0027171
rosa_laevigata	RLG00000014193 RLG00000023983 RLG00000035737
rosa_multiflora	Rmu_sc0001207.1_g000028 Rmu_sc0002986.1_g000013 Rmu_sc0007035.1_g000005 Rmu_sc0016122.1_g000001 Rmu_sc0037919.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029230 Rroxscaffold_1G00029310 Rroxscaffold_2G00114250 Rroxscaffold_3G00260930 Rroxscaffold_3G00260940 Rroxscaffold_4G00311820 Rroxscaffold_4G00332560 Rroxscaffold_5G00338520 Rroxscaffold_5G00355640 Rroxscaffold_6G00407790
rosa_rugosa	Rorug01G0107500 Rorug02G0045900 Rorug03G0135600 Rorug06G0225600 Rorug07G0319400 Rorug07G0330900
rosa_samantha	Rh1AG080400 Rh1AG119900 Rh1AG120000 Rh1AG233100 Rh1CG115000 Rh1CG217700 Rh2BG241500 Rh2BG353000 Rh2DG556200 Rh3AG186100 Rh3AG202300 Rh3BG214400 Rh3CG211200 Rh3DG210400 Rh3DG227900 Rh5AG343700 Rh5DG191000
rosa_wichuraiana	Rw1G018100 Rw3G017000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	80
AclWI	GGATC	1 cut(s)	228
AfaI	GTAC	1 cut(s)	178
AflIII	ACRYGT	1 cut(s)	301
AjuI	GAANNNNNNNTTGG	2 cut(s)	146, 178
AluBI	AGCT	3 cut(s)	70, 140, 286
AluI	AGCT	3 cut(s)	70, 140, 286
Alw21I	GWGCWC	2 cut(s)	72, 264
AlwI	GGATC	1 cut(s)	228
ApeKI	GCWGC	1 cut(s)	137
AsuHPI	GGTGA	1 cut(s)	20
BaeGI	GKGCMC	1 cut(s)	251
BanII	GRGCYC	1 cut(s)	72
BauI	CACGAG	1 cut(s)	269
Bbv12I	GWGCWC	2 cut(s)	72, 264
BbvI	GCAGC	1 cut(s)	149
BccI	CCATC	2 cut(s)	177, 259
BceAI	ACGGC	1 cut(s)	159
BfmI	CTRYAG	1 cut(s)	255
BglII	AGATCT	1 cut(s)	273
BisI	GCNGC	1 cut(s)	138
BlsI	GCNGC	1 cut(s)	139
BmiI	GGNNCC	1 cut(s)	93
BpmI	CTGGAG	2 cut(s)	180, 266
BpuEI	CTTGAG	1 cut(s)	200
Bse1I	ACTGG	1 cut(s)	292
BseGI	GGATG	1 cut(s)	20
BseNI	ACTGG	1 cut(s)	292
BseRI	GAGGAG	1 cut(s)	131
BseSI	GKGCMC	1 cut(s)	251
BseXI	GCAGC	1 cut(s)	149
BsiHKAI	GWGCWC	2 cut(s)	72, 264
Bsp1286I	GDGCHC	3 cut(s)	72, 251, 264
Bsp143I	GATC	2 cut(s)	220, 273
BspACI	CCGC	1 cut(s)	80
BspHI	TCATGA	1 cut(s)	33
BspLI	GGNNCC	1 cut(s)	93
BspPI	GGATC	1 cut(s)	228
BsrI	ACTGG	1 cut(s)	292
BssMI	GATC	2 cut(s)	220, 273
BssSI	CACGAG	1 cut(s)	269
Bst2BI	CACGAG	1 cut(s)	269
BstF5I	GGATG	1 cut(s)	20
BstKTI	GATC	2 cut(s)	223, 276
BstMBI	GATC	2 cut(s)	220, 273
BstNSI	RCATGY	1 cut(s)	305
BstSFI	CTRYAG	1 cut(s)	255
BstSLI	GKGCMC	1 cut(s)	251
BstV1I	GCAGC	1 cut(s)	149
BstX2I	RGATCY	2 cut(s)	220, 273
BstXI	CCANNNNNNTGG	1 cut(s)	140
BstYI	RGATCY	2 cut(s)	220, 273
BtsCI	GGATG	1 cut(s)	20
CciI	TCATGA	1 cut(s)	33
Csp6I	GTAC	1 cut(s)	177
CviAII	CATG	3 cut(s)	34, 157, 302
CviJI	RGCY	5 cut(s)	46, 70, 140, 174, 286
CviKI_1	RGCY	5 cut(s)	46, 70, 140, 174, 286
CviQI	GTAC	1 cut(s)	177
DpnI	GATC	2 cut(s)	222, 275
DpnII	GATC	2 cut(s)	220, 273
Ecl136II	GAGCTC	1 cut(s)	70
Eco24I	GRGCYC	1 cut(s)	72
Eco53kI	GAGCTC	1 cut(s)	70
EcoICRI	GAGCTC	1 cut(s)	70
EcoT38I	GRGCYC	1 cut(s)	72
FaeI	CATG	3 cut(s)	37, 160, 305
FaiI	YATR	4 cut(s)	35, 158, 297, 303
FatI	CATG	3 cut(s)	33, 156, 301
FauI	CCCGC	1 cut(s)	87
Fnu4HI	GCNGC	1 cut(s)	138
FokI	GGATG	1 cut(s)	7
FriOI	GRGCYC	1 cut(s)	72
Fsp4HI	GCNGC	1 cut(s)	138
GluI	GCNGC	1 cut(s)	138
GsuI	CTGGAG	2 cut(s)	180, 266
Hin1II	CATG	3 cut(s)	37, 160, 305
HinfI	GANTC	2 cut(s)	187, 210
HphI	GGTGA	1 cut(s)	20
Hpy188III	TCNNGA	3 cut(s)	34, 197, 269
HpyCH4IV	ACGT	1 cut(s)	231
HpyCH4V	TGCA	1 cut(s)	58
HpySE526I	ACGT	1 cut(s)	231
Hsp92II	CATG	3 cut(s)	37, 160, 305
Kzo9I	GATC	2 cut(s)	220, 273
LmnI	GCTCC	2 cut(s)	67, 75
LpnPI	CCDG	6 cut(s)	126, 151, 193, 210, 296, 305
Lsp1109I	GCAGC	1 cut(s)	149
MaeII	ACGT	1 cut(s)	231
MalI	GATC	2 cut(s)	222, 275
MboI	GATC	2 cut(s)	220, 273
MflI	RGATCY	2 cut(s)	220, 273
MhlI	GDGCHC	3 cut(s)	72, 251, 264
MnlI	CCTC	9 cut(s)	19, 34, 41, 109, 112, 116, 224, 290, 301
MseI	TTAA	1 cut(s)	243
MspA1I	CMGCKG	2 cut(s)	140, 286
NdeII	GATC	2 cut(s)	220, 273
NlaIII	CATG	3 cut(s)	37, 160, 305
NlaIV	GGNNCC	1 cut(s)	93
NspI	RCATGY	1 cut(s)	305
PagI	TCATGA	1 cut(s)	33
PciI	ACATGT	1 cut(s)	301
PfeI	GAWTC	2 cut(s)	187, 210
PkrI	GCNGC	1 cut(s)	139
PscI	ACATGT	1 cut(s)	301
Psp124BI	GAGCTC	1 cut(s)	72
PspN4I	GGNNCC	1 cut(s)	93
PsuI	RGATCY	2 cut(s)	220, 273
PvuII	CAGCTG	2 cut(s)	140, 286
RsaI	GTAC	1 cut(s)	178
RsaNI	GTAC	1 cut(s)	177
SacI	GAGCTC	1 cut(s)	72
SaqAI	TTAA	1 cut(s)	243
SatI	GCNGC	1 cut(s)	138
Sau3AI	GATC	2 cut(s)	220, 273
SduI	GDGCHC	3 cut(s)	72, 251, 264
SetI	ASST	5 cut(s)	33, 72, 142, 234, 288
SfcI	CTRYAG	1 cut(s)	255
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
SsiI	CCGC	1 cut(s)	80
SstI	GAGCTC	1 cut(s)	72
TaiI	ACGT	1 cut(s)	234
TaqI	TCGA	1 cut(s)	11
TfiI	GAWTC	2 cut(s)	187, 210
Tru1I	TTAA	1 cut(s)	243
Tru9I	TTAA	1 cut(s)	243
TseI	GCWGC	1 cut(s)	137
XceI	RCATGY	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.