Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0000857

Physical Location & Seq

Genomic Coordinates Forward (+)

20581592 .. 20582964

Gene Structure 1373 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG119900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGTTGGTCTGGCCGGCCCAGATTGGAGCTACTTTCCCTCTCAACTCAAACCCTAGCCCCTCCTCCTCTTGTCTCACAGCTCGCCTGAGGCTACTGAATGCGATCATGGCCGACGTCGCCACCCTGTCGTGTGCTCGTTGCAGCAAATCCGCCAATCTTCAGTGTCCCAAGTATGTGGAATTGAAGCTTCCTCATGAAGATGCCGCTTTCTGGGCTGTTTGGATATCTCTGGGAGGTAGGCTTGGGTTCGCTTTGGAAGAGGTGTGTGTCGAGATTGTGATCAAGTTTAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016485 GO:0019538 GO:0031365 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051604 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M24 zf-C6H2

Protein Analysis

97

Amino Acids

10.61

Weight (kDa)

8.36

Isoelectric Point (pI)

46.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000857)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36230
fragaria_vesca	FvH4_6g18790 FvH4_6g18790 FvH4_6g18790 FvH4_6g18790 FvH4_6g18790 FvH4_6g18790
malus_domestica	MD12G1036500.v1.1 MD14G1023300.v1.1
prunus_persica	Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1
pyrus_communis	pycom12g02400 pycom14g02220 pycom14g02230
rosa_chinensis	RchiOBHm_Chr1g0324901 RchiOBHm_Chr1g0350151 RchiOBHm_Chr3g0473801 RchiOBHm_Chr4g0393091 RchiOBHm_Chr4g0409701 RchiOBHm_Chr5g0027171
rosa_laevigata	RLG00000014193 RLG00000023983 RLG00000035737
rosa_multiflora	Rmu_sc0001207.1_g000028 Rmu_sc0002986.1_g000013 Rmu_sc0007035.1_g000005 Rmu_sc0016122.1_g000001 Rmu_sc0037919.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029230 Rroxscaffold_1G00029310 Rroxscaffold_2G00114250 Rroxscaffold_3G00260930 Rroxscaffold_3G00260940 Rroxscaffold_4G00311820 Rroxscaffold_4G00332560 Rroxscaffold_5G00338520 Rroxscaffold_5G00355640 Rroxscaffold_6G00407790
rosa_rugosa	Rorug01G0107500 Rorug02G0045900 Rorug03G0135600 Rorug06G0225600 Rorug07G0319400 Rorug07G0330900
rosa_samantha	Rh1AG080400 Rh1AG119900 Rh1AG120000 Rh1AG233100 Rh1CG115000 Rh1CG217700 Rh2BG241500 Rh2BG353000 Rh2DG556200 Rh3AG186100 Rh3AG202300 Rh3BG214400 Rh3CG211200 Rh3DG210400 Rh3DG227900 Rh5AG343700 Rh5DG191000
rosa_wichuraiana	Rw1G018100 Rw3G017000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	117
AciI	CCGC	2 cut(s)	150, 204
AcoI	YGGCCR	2 cut(s)	11, 108
AcuI	CTGAAG	1 cut(s)	143
AcyI	GRCGYC	1 cut(s)	114
AfiI	CCNNNNNNNGG	1 cut(s)	210
AgsI	TTSAA	1 cut(s)	184
AluBI	AGCT	3 cut(s)	29, 80, 187
AluI	AGCT	3 cut(s)	29, 80, 187
Alw21I	GWGCWC	1 cut(s)	136
Alw26I	GTCTC	1 cut(s)	77
AoxI	GGCC	3 cut(s)	11, 15, 108
ApeKI	GCWGC	1 cut(s)	141
AspS9I	GGNCC	1 cut(s)	16
AxyI	CCTNAGG	1 cut(s)	86
Bbv12I	GWGCWC	1 cut(s)	136
BbvI	GCAGC	1 cut(s)	153
BclI	TGATCA	1 cut(s)	279
BcoDI	GTCTC	1 cut(s)	77
BfaI	CTAG	1 cut(s)	54
BisI	GCNGC	2 cut(s)	142, 204
BlsI	GCNGC	2 cut(s)	143, 205
BmgT120I	GGNCC	1 cut(s)	16
BmsI	GCATC	1 cut(s)	190
BsaBI	GATNNNNATC	1 cut(s)	278
BsaHI	GRCGYC	1 cut(s)	114
Bsc4I	CCNNNNNNNGG	1 cut(s)	210
Bse118I	RCCGGY	1 cut(s)	13
Bse21I	CCTNAGG	1 cut(s)	86
Bse8I	GATNNNNATC	1 cut(s)	278
BseJI	GATNNNNATC	1 cut(s)	278
BseLI	CCNNNNNNNGG	1 cut(s)	210
BseMII	CTCAG	1 cut(s)	77
BseRI	GAGGAG	2 cut(s)	52, 55
BseXI	GCAGC	1 cut(s)	153
BshFI	GGCC	3 cut(s)	13, 17, 110
BsiHKAI	GWGCWC	1 cut(s)	136
BsiSI	CCGG	1 cut(s)	14
BslFI	GGGAC	1 cut(s)	150
BslI	CCNNNNNNNGG	1 cut(s)	210
BsmAI	GTCTC	1 cut(s)	77
BsmFI	GGGAC	1 cut(s)	150
BsmI	GAATGC	1 cut(s)	103
BsnI	GGCC	3 cut(s)	13, 17, 110
Bsp1286I	GDGCHC	1 cut(s)	136
Bsp143I	GATC	2 cut(s)	102, 279
BspACI	CCGC	2 cut(s)	150, 204
BspANI	GGCC	3 cut(s)	13, 17, 110
BspCNI	CTCAG	1 cut(s)	78
BspHI	TCATGA	1 cut(s)	193
BsrFI	RCCGGY	1 cut(s)	13
BssAI	RCCGGY	1 cut(s)	13
BssMI	GATC	2 cut(s)	102, 279
BssNI	GRCGYC	1 cut(s)	114
Bst6I	CTCTTC	1 cut(s)	252
BstACI	GRCGYC	1 cut(s)	114
BstC8I	GCNNGC	2 cut(s)	15, 82
BstDEI	CTNAG	1 cut(s)	86
BstKTI	GATC	2 cut(s)	105, 282
BstMAI	GTCTC	1 cut(s)	77
BstMBI	GATC	2 cut(s)	102, 279
BstMWI	GCNNNNNNNGC	3 cut(s)	107, 116, 212
BstV1I	GCAGC	1 cut(s)	153
BstXI	CCANNNNNNTGG	1 cut(s)	175
Bsu36I	CCTNAGG	1 cut(s)	86
BsuRI	GGCC	3 cut(s)	13, 17, 110
BtsIMutI	CAGTG	1 cut(s)	167
Cac8I	GCNNGC	2 cut(s)	15, 82
CciI	TCATGA	1 cut(s)	193
Cfr10I	RCCGGY	1 cut(s)	13
Cfr13I	GGNCC	1 cut(s)	16
CviAII	CATG	2 cut(s)	106, 194
DdeI	CTNAG	1 cut(s)	86
DpnI	GATC	2 cut(s)	104, 281
DpnII	GATC	2 cut(s)	102, 279
EaeI	YGGCCR	2 cut(s)	11, 108
Eam1104I	CTCTTC	1 cut(s)	252
EarI	CTCTTC	1 cut(s)	252
EciI	GGCGGA	1 cut(s)	139
Eco32I	GATATC	1 cut(s)	225
Eco57I	CTGAAG	1 cut(s)	143
Eco81I	CCTNAGG	1 cut(s)	86
EcoRV	GATATC	1 cut(s)	225
FaeI	CATG	2 cut(s)	109, 197
FaiI	YATR	3 cut(s)	107, 174, 195
FaqI	GGGAC	1 cut(s)	150
FatI	CATG	2 cut(s)	105, 193
FbaI	TGATCA	1 cut(s)	279
Fnu4HI	GCNGC	2 cut(s)	142, 204
FseI	GGCCGGCC	1 cut(s)	17
Fsp4HI	GCNGC	2 cut(s)	142, 204
FspBI	CTAG	1 cut(s)	54
GluI	GCNGC	2 cut(s)	142, 204
HaeIII	GGCC	3 cut(s)	13, 17, 110
HapII	CCGG	1 cut(s)	14
Hin1I	GRCGYC	1 cut(s)	114
Hin1II	CATG	2 cut(s)	109, 197
HindIII	AAGCTT	1 cut(s)	185
HpaII	CCGG	1 cut(s)	14
Hpy188III	TCNNGA	2 cut(s)	194, 271
Hpy99I	CGWCG	2 cut(s)	116, 119
HpyCH4IV	ACGT	1 cut(s)	114
HpyCH4V	TGCA	1 cut(s)	141
HpyF10VI	GCNNNNNNNGC	3 cut(s)	107, 116, 212
HpyF3I	CTNAG	1 cut(s)	86
HpySE526I	ACGT	1 cut(s)	114
Hsp92I	GRCGYC	1 cut(s)	114
Hsp92II	CATG	2 cut(s)	109, 197
KroI	GCCGGC	1 cut(s)	13
KroNI	GCCGGC	1 cut(s)	15
Ksp22I	TGATCA	1 cut(s)	279
Kzo9I	GATC	2 cut(s)	102, 279
LmnI	GCTCC	1 cut(s)	26
LpnPI	CCDG	6 cut(s)	27, 32, 98, 137, 196, 215
Lsp1109I	GCAGC	1 cut(s)	153
LweI	GCATC	1 cut(s)	190
MaeI	CTAG	1 cut(s)	54
MaeII	ACGT	1 cut(s)	114
MalI	GATC	2 cut(s)	104, 281
MboI	GATC	2 cut(s)	102, 279
MboII	GAAGA	3 cut(s)	149, 209, 269
MhlI	GDGCHC	1 cut(s)	136
MluCI	AATT	1 cut(s)	179
MnlI	CCTC	8 cut(s)	48, 70, 73, 76, 81, 201, 227, 253
MroNI	GCCGGC	1 cut(s)	13
MslI	CAYNNNNRTG	1 cut(s)	198
MspI	CCGG	1 cut(s)	14
Mva1269I	GAATGC	1 cut(s)	103
MwoI	GCNNNNNNNGC	3 cut(s)	107, 116, 212
NaeI	GCCGGC	1 cut(s)	15
NdeII	GATC	2 cut(s)	102, 279
NgoMIV	GCCGGC	1 cut(s)	13
NlaIII	CATG	2 cut(s)	109, 197
PagI	TCATGA	1 cut(s)	193
PctI	GAATGC	1 cut(s)	103
PdiI	GCCGGC	1 cut(s)	15
PkrI	GCNGC	2 cut(s)	143, 205
PspPI	GGNCC	1 cut(s)	16
RigI	GGCCGGCC	1 cut(s)	17
RseI	CAYNNNNRTG	1 cut(s)	198
SatI	GCNGC	2 cut(s)	142, 204
Sau3AI	GATC	2 cut(s)	102, 279
Sau96I	GGNCC	1 cut(s)	16
SduI	GDGCHC	1 cut(s)	136
SetI	ASST	7 cut(s)	31, 82, 117, 189, 238, 264, 293
SfaNI	GCATC	1 cut(s)	190
SmiMI	CAYNNNNRTG	1 cut(s)	198
Sse9I	AATT	1 cut(s)	179
SsiI	CCGC	2 cut(s)	150, 204
SspMI	CTAG	1 cut(s)	54
TaiI	ACGT	1 cut(s)	117
TaqI	TCGA	1 cut(s)	270
TasI	AATT	1 cut(s)	179
TauI	GCSGC	1 cut(s)	206
TscAI	CASTG	1 cut(s)	167
TseI	GCWGC	1 cut(s)	141
TspDTI	ATGAA	1 cut(s)	210
TspRI	CASTG	1 cut(s)	167
XspI	CTAG	1 cut(s)	54
ZraI	GACGTC	1 cut(s)	115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.