Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0000857

Physical Location & Seq

Genomic Coordinates Forward (+)

23086663 .. 23089566

Gene Structure 2904 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG115000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGTTGGTCTGGCCGGCCCAGATTGGAGCTACTTTCCCTCTCAACTCAAACCCTAGCCCCTCCTCCTCTTGTCTCACAGCTCGCCTGAGGCTACTGAATGCGATCATGGCCGACGTCGCCACCCTGTCGTGTGCTCGTTGCAGCAAATCCGCCAATCTTCAGTGTCCCAAGTATGTGGAATTGAAGCTTCCTCATGAAGATGCCGCTTTCTGGGCTGTTTGGATATCTCTGGGAGGTAGGCTTGGGTTCGCTTTGGAAGAGGTGTGTGTCGAGATTGTGATCAAGTTTAGTCTCGGTAAAAAGAAGTTTGATGGGTCTAGGCCATCTGCAACGTTCAGTAAGTTTCTGCTTCTGTTTTTGGGGAAAGTGAAACAGATTGTTGGGTCGACGCTTTCGGATTCTAAGGAAGATGGGCTGGCTCTGGTTACCAATTTTGTGTCAGATAAGTCGGCGGGGGAGTATGCAAAGATGTATAAGGAAGATGGGCTTACAGGTGGCCATGTGATAATGCTGGGGGCAGATCCTTTGAGTAGAGCTGCTGCCATTGAAGCTCTGCATGCCTATTCTGATTTTCCTCTGCTGAACTTGCTGCGAGGACTGTATGTATTTAATAATGGGCAAATGGATCTTGAAAGGCTGAAAGATCTTGTTCATGTTGTTGGAAAAGAGAGGCTTGTTTTAGACCTTAGCTGTAGAAAAAGGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0000162 GO:0003674 GO:0003824 GO:0003949 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

His_biosynth

Protein Analysis

235

Amino Acids

25.67

Weight (kDa)

8.86

Isoelectric Point (pI)

35.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000857)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36230
fragaria_vesca	FvH4_6g18790 FvH4_6g18790 FvH4_6g18790 FvH4_6g18790 FvH4_6g18790 FvH4_6g18790
malus_domestica	MD12G1036500.v1.1 MD14G1023300.v1.1
prunus_persica	Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1
pyrus_communis	pycom12g02400 pycom14g02220 pycom14g02230
rosa_chinensis	RchiOBHm_Chr1g0324901 RchiOBHm_Chr1g0350151 RchiOBHm_Chr3g0473801 RchiOBHm_Chr4g0393091 RchiOBHm_Chr4g0409701 RchiOBHm_Chr5g0027171
rosa_laevigata	RLG00000014193 RLG00000023983 RLG00000035737
rosa_multiflora	Rmu_sc0001207.1_g000028 Rmu_sc0002986.1_g000013 Rmu_sc0007035.1_g000005 Rmu_sc0016122.1_g000001 Rmu_sc0037919.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029230 Rroxscaffold_1G00029310 Rroxscaffold_2G00114250 Rroxscaffold_3G00260930 Rroxscaffold_3G00260940 Rroxscaffold_4G00311820 Rroxscaffold_4G00332560 Rroxscaffold_5G00338520 Rroxscaffold_5G00355640 Rroxscaffold_6G00407790
rosa_rugosa	Rorug01G0107500 Rorug02G0045900 Rorug03G0135600 Rorug06G0225600 Rorug07G0319400 Rorug07G0330900
rosa_samantha	Rh1AG080400 Rh1AG119900 Rh1AG120000 Rh1AG233100 Rh1CG115000 Rh1CG217700 Rh2BG241500 Rh2BG353000 Rh2DG556200 Rh3AG186100 Rh3AG202300 Rh3BG214400 Rh3CG211200 Rh3DG210400 Rh3DG227900 Rh5AG343700 Rh5DG191000
rosa_wichuraiana	Rw1G018100 Rw3G017000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	117
AccI	GTMKAC	1 cut(s)	386
AciI	CCGC	3 cut(s)	150, 204, 452
AclI	AACGTT	1 cut(s)	332
AclWI	GGATC	2 cut(s)	515, 633
AcoI	YGGCCR	3 cut(s)	11, 108, 496
AcuI	CTGAAG	1 cut(s)	143
AcyI	GRCGYC	1 cut(s)	114
AfiI	CCNNNNNNNGG	1 cut(s)	210
AgsI	TTSAA	3 cut(s)	184, 548, 632
AluBI	AGCT	6 cut(s)	29, 80, 187, 536, 551, 690
AluI	AGCT	6 cut(s)	29, 80, 187, 536, 551, 690
Alw21I	GWGCWC	1 cut(s)	136
Alw26I	GTCTC	2 cut(s)	77, 296
AlwI	GGATC	2 cut(s)	515, 633
AoxI	GGCC	5 cut(s)	11, 15, 108, 320, 496
ApeKI	GCWGC	4 cut(s)	141, 536, 539, 589
AspS9I	GGNCC	1 cut(s)	16
AxyI	CCTNAGG	1 cut(s)	86
BalI	TGGCCA	1 cut(s)	498
Bbv12I	GWGCWC	1 cut(s)	136
BbvI	GCAGC	4 cut(s)	153, 523, 526, 576
BccI	CCATC	4 cut(s)	305, 331, 404, 476
BclI	TGATCA	1 cut(s)	279
BcoDI	GTCTC	2 cut(s)	77, 296
BfaI	CTAG	2 cut(s)	54, 318
BfmI	CTRYAG	1 cut(s)	691
BglII	AGATCT	1 cut(s)	643
BisI	GCNGC	5 cut(s)	142, 204, 537, 540, 590
BlsI	GCNGC	5 cut(s)	143, 205, 538, 541, 591
BmgT120I	GGNCC	1 cut(s)	16
BmsI	GCATC	1 cut(s)	190
Bpu10I	CCTNAGC	1 cut(s)	686
BsaBI	GATNNNNATC	1 cut(s)	278
BsaHI	GRCGYC	1 cut(s)	114
Bsc4I	CCNNNNNNNGG	1 cut(s)	210
Bse118I	RCCGGY	1 cut(s)	13
Bse21I	CCTNAGG	1 cut(s)	86
Bse8I	GATNNNNATC	1 cut(s)	278
BseJI	GATNNNNATC	1 cut(s)	278
BseLI	CCNNNNNNNGG	1 cut(s)	210
BseMII	CTCAG	1 cut(s)	77
BseRI	GAGGAG	2 cut(s)	52, 55
BseXI	GCAGC	4 cut(s)	153, 523, 526, 576
BseYI	CCCAGC	1 cut(s)	511
BshFI	GGCC	5 cut(s)	13, 17, 110, 322, 498
BsiHKAI	GWGCWC	1 cut(s)	136
BsiSI	CCGG	1 cut(s)	14
BslFI	GGGAC	1 cut(s)	150
BslI	CCNNNNNNNGG	1 cut(s)	210
BsmAI	GTCTC	2 cut(s)	77, 296
BsmFI	GGGAC	1 cut(s)	150
BsmI	GAATGC	1 cut(s)	103
BsnI	GGCC	5 cut(s)	13, 17, 110, 322, 498
Bsp1286I	GDGCHC	1 cut(s)	136
Bsp143I	GATC	5 cut(s)	102, 279, 520, 625, 643
BspACI	CCGC	3 cut(s)	150, 204, 452
BspANI	GGCC	5 cut(s)	13, 17, 110, 322, 498
BspCNI	CTCAG	1 cut(s)	78
BspHI	TCATGA	1 cut(s)	193
BspPI	GGATC	2 cut(s)	515, 633
BsrFI	RCCGGY	1 cut(s)	13
BssAI	RCCGGY	1 cut(s)	13
BssMI	GATC	5 cut(s)	102, 279, 520, 625, 643
BssNI	GRCGYC	1 cut(s)	114
Bst4CI	ACNGT	1 cut(s)	600
Bst6I	CTCTTC	1 cut(s)	252
BstACI	GRCGYC	1 cut(s)	114
BstC8I	GCNNGC	4 cut(s)	15, 82, 417, 558
BstDEI	CTNAG	3 cut(s)	86, 402, 686
BstEII	GGTNACC	1 cut(s)	424
BstKTI	GATC	5 cut(s)	105, 282, 523, 628, 646
BstMAI	GTCTC	2 cut(s)	77, 296
BstMBI	GATC	5 cut(s)	102, 279, 520, 625, 643
BstMWI	GCNNNNNNNGC	6 cut(s)	107, 116, 212, 548, 557, 586
BstNSI	RCATGY	1 cut(s)	560
BstPI	GGTNACC	1 cut(s)	424
BstSFI	CTRYAG	1 cut(s)	691
BstV1I	GCAGC	4 cut(s)	153, 523, 526, 576
BstX2I	RGATCY	3 cut(s)	520, 625, 643
BstXI	CCANNNNNNTGG	1 cut(s)	175
BstYI	RGATCY	3 cut(s)	520, 625, 643
Bsu36I	CCTNAGG	1 cut(s)	86
BsuRI	GGCC	5 cut(s)	13, 17, 110, 322, 498
BtsIMutI	CAGTG	1 cut(s)	167
Cac8I	GCNNGC	4 cut(s)	15, 82, 417, 558
CciI	TCATGA	1 cut(s)	193
Cfr10I	RCCGGY	1 cut(s)	13
Cfr13I	GGNCC	1 cut(s)	16
CseI	GACGC	1 cut(s)	397
CviAII	CATG	5 cut(s)	106, 194, 500, 557, 653
DdeI	CTNAG	3 cut(s)	86, 402, 686
DpnI	GATC	5 cut(s)	104, 281, 522, 627, 645
DpnII	GATC	5 cut(s)	102, 279, 520, 625, 643
EaeI	YGGCCR	3 cut(s)	11, 108, 496
Eam1104I	CTCTTC	1 cut(s)	252
EarI	CTCTTC	1 cut(s)	252
EciI	GGCGGA	1 cut(s)	139
Eco32I	GATATC	1 cut(s)	225
Eco57I	CTGAAG	1 cut(s)	143
Eco81I	CCTNAGG	1 cut(s)	86
Eco91I	GGTNACC	1 cut(s)	424
EcoO65I	GGTNACC	1 cut(s)	424
EcoRV	GATATC	1 cut(s)	225
FaeI	CATG	5 cut(s)	109, 197, 503, 560, 656
FalI	AAGNNNNNCTT	4 cut(s)	471, 503, 657, 689
FaqI	GGGAC	1 cut(s)	150
FatI	CATG	5 cut(s)	105, 193, 499, 556, 652
FauI	CCCGC	1 cut(s)	445
FbaI	TGATCA	1 cut(s)	279
FblI	GTMKAC	1 cut(s)	386
Fnu4HI	GCNGC	5 cut(s)	142, 204, 537, 540, 590
FseI	GGCCGGCC	1 cut(s)	17
Fsp4HI	GCNGC	5 cut(s)	142, 204, 537, 540, 590
FspBI	CTAG	2 cut(s)	54, 318
GluI	GCNGC	5 cut(s)	142, 204, 537, 540, 590
GsaI	CCCAGC	1 cut(s)	515
HaeIII	GGCC	5 cut(s)	13, 17, 110, 322, 498
HapII	CCGG	1 cut(s)	14
HgaI	GACGC	1 cut(s)	397
Hin1I	GRCGYC	1 cut(s)	114
Hin1II	CATG	5 cut(s)	109, 197, 503, 560, 656
HincII	GTYRAC	1 cut(s)	387
HindII	GTYRAC	1 cut(s)	387
HindIII	AAGCTT	1 cut(s)	185
HinfI	GANTC	1 cut(s)	398
HpaII	CCGG	1 cut(s)	14
Hpy166II	GTNNAC	1 cut(s)	387
Hpy188I	TCNGA	3 cut(s)	397, 442, 568
Hpy188III	TCNNGA	3 cut(s)	194, 271, 629
Hpy8I	GTNNAC	1 cut(s)	387
Hpy99I	CGWCG	3 cut(s)	116, 119, 391
HpyCH4III	ACNGT	1 cut(s)	600
HpyCH4IV	ACGT	2 cut(s)	114, 332
HpyCH4V	TGCA	4 cut(s)	141, 329, 464, 556
HpyF10VI	GCNNNNNNNGC	6 cut(s)	107, 116, 212, 548, 557, 586
HpyF3I	CTNAG	3 cut(s)	86, 402, 686
HpySE526I	ACGT	2 cut(s)	114, 332
Hsp92I	GRCGYC	1 cut(s)	114
Hsp92II	CATG	5 cut(s)	109, 197, 503, 560, 656
KroI	GCCGGC	1 cut(s)	13
KroNI	GCCGGC	1 cut(s)	15
Ksp22I	TGATCA	1 cut(s)	279
Kzo9I	GATC	5 cut(s)	102, 279, 520, 625, 643
LmnI	GCTCC	1 cut(s)	26
Lsp1109I	GCAGC	4 cut(s)	153, 523, 526, 576
LweI	GCATC	1 cut(s)	190
MaeI	CTAG	2 cut(s)	54, 318
MaeII	ACGT	2 cut(s)	114, 332
MaeIII	GTNAC	1 cut(s)	424
MalI	GATC	5 cut(s)	104, 281, 522, 627, 645
MboI	GATC	5 cut(s)	102, 279, 520, 625, 643
MboII	GAAGA	5 cut(s)	149, 209, 269, 419, 491
MflI	RGATCY	3 cut(s)	520, 625, 643
MhlI	GDGCHC	1 cut(s)	136
MlsI	TGGCCA	1 cut(s)	498
MluCI	AATT	2 cut(s)	179, 430
MluNI	TGGCCA	1 cut(s)	498
MmeI	TCCRAC	1 cut(s)	640
Mox20I	TGGCCA	1 cut(s)	498
MroNI	GCCGGC	1 cut(s)	13
MscI	TGGCCA	1 cut(s)	498
MseI	TTAA	1 cut(s)	609
MslI	CAYNNNNRTG	1 cut(s)	198
Msp20I	TGGCCA	1 cut(s)	498
MspI	CCGG	1 cut(s)	14
Mva1269I	GAATGC	1 cut(s)	103
MwoI	GCNNNNNNNGC	6 cut(s)	107, 116, 212, 548, 557, 586
NaeI	GCCGGC	1 cut(s)	15
NdeII	GATC	5 cut(s)	102, 279, 520, 625, 643
NgoMIV	GCCGGC	1 cut(s)	13
NlaIII	CATG	5 cut(s)	109, 197, 503, 560, 656
NspI	RCATGY	1 cut(s)	560
PaeI	GCATGC	1 cut(s)	560
PagI	TCATGA	1 cut(s)	193
PctI	GAATGC	1 cut(s)	103
PdiI	GCCGGC	1 cut(s)	15
PfeI	GAWTC	1 cut(s)	398
PkrI	GCNGC	5 cut(s)	143, 205, 538, 541, 591
Psp1406I	AACGTT	1 cut(s)	332
PspEI	GGTNACC	1 cut(s)	424
PspFI	CCCAGC	1 cut(s)	511
PspPI	GGNCC	1 cut(s)	16
PsuI	RGATCY	3 cut(s)	520, 625, 643
RigI	GGCCGGCC	1 cut(s)	17
RseI	CAYNNNNRTG	1 cut(s)	198
SalI	GTCGAC	1 cut(s)	385
SaqAI	TTAA	1 cut(s)	609
SatI	GCNGC	5 cut(s)	142, 204, 537, 540, 590
Sau3AI	GATC	5 cut(s)	102, 279, 520, 625, 643
Sau96I	GGNCC	1 cut(s)	16
SduI	GDGCHC	1 cut(s)	136
SfaNI	GCATC	1 cut(s)	190
SfcI	CTRYAG	1 cut(s)	691
SmiMI	CAYNNNNRTG	1 cut(s)	198
SphI	GCATGC	1 cut(s)	560
Sse9I	AATT	2 cut(s)	179, 430
SsiI	CCGC	3 cut(s)	150, 204, 452
SspMI	CTAG	2 cut(s)	54, 318
TaaI	ACNGT	1 cut(s)	600
TaiI	ACGT	2 cut(s)	117, 335
TaqI	TCGA	2 cut(s)	270, 386
TasI	AATT	2 cut(s)	179, 430
TauI	GCSGC	1 cut(s)	206
TfiI	GAWTC	1 cut(s)	398
Tru1I	TTAA	1 cut(s)	609
Tru9I	TTAA	1 cut(s)	609
TscAI	CASTG	1 cut(s)	167
TseI	GCWGC	4 cut(s)	141, 536, 539, 589
TspDTI	ATGAA	2 cut(s)	210, 641
TspRI	CASTG	1 cut(s)	167
XceI	RCATGY	1 cut(s)	560
XmiI	GTMKAC	1 cut(s)	386
XspI	CTAG	2 cut(s)	54, 318
ZraI	GACGTC	1 cut(s)	115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.