Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000857

Physical Location & Seq

Genomic Coordinates Reverse (-)

3611204 .. 3611602

Gene Structure 399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0045900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGTTGGAAGGAAAAGGAATGATAAAGGAGACAGATATGGCAGATAAGAAGATGCAGATGCAAGCCATGGCTTGTGCTTCTGAAGCTCTTGATCTGCATGATGTTATTGATTGCATCTCTATTGCTGCCCACATCAAAAAGGAGTTTGACAAGAGGTATGGGAGTGGATGGCAATGTGTTGTGGGTTCTAACTTTGGTTGCTTCTTCACCCACACACCAGGGACTTTCATATATTTCTCTTTGGAGACCCTTAATTTCCTTATTTTCAAGGGAGCTTCTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0000162 GO:0003674 GO:0003824 GO:0003949 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

His_biosynth

Protein Analysis

94

Amino Acids

10.47

Weight (kDa)

5.83

Isoelectric Point (pI)

13.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynein_light	PF01221	7 - 90	1.1e-31	Dynein light chain type 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000857)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36230
fragaria_vesca	FvH4_6g18790 FvH4_6g18790 FvH4_6g18790 FvH4_6g18790 FvH4_6g18790 FvH4_6g18790
malus_domestica	MD12G1036500.v1.1 MD14G1023300.v1.1
prunus_persica	Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1
pyrus_communis	pycom12g02400 pycom14g02220 pycom14g02230
rosa_chinensis	RchiOBHm_Chr1g0324901 RchiOBHm_Chr1g0350151 RchiOBHm_Chr3g0473801 RchiOBHm_Chr4g0393091 RchiOBHm_Chr4g0409701 RchiOBHm_Chr5g0027171
rosa_laevigata	RLG00000014193 RLG00000023983 RLG00000035737
rosa_multiflora	Rmu_sc0001207.1_g000028 Rmu_sc0002986.1_g000013 Rmu_sc0007035.1_g000005 Rmu_sc0016122.1_g000001 Rmu_sc0037919.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029230 Rroxscaffold_1G00029310 Rroxscaffold_2G00114250 Rroxscaffold_3G00260930 Rroxscaffold_3G00260940 Rroxscaffold_4G00311820 Rroxscaffold_4G00332560 Rroxscaffold_5G00338520 Rroxscaffold_5G00355640 Rroxscaffold_6G00407790
rosa_rugosa	Rorug01G0107500 Rorug02G0045900 Rorug03G0135600 Rorug06G0225600 Rorug07G0319400 Rorug07G0330900
rosa_samantha	Rh1AG080400 Rh1AG119900 Rh1AG120000 Rh1AG233100 Rh1CG115000 Rh1CG217700 Rh2BG241500 Rh2BG353000 Rh2DG556200 Rh3AG186100 Rh3AG202300 Rh3BG214400 Rh3CG211200 Rh3DG210400 Rh3DG227900 Rh5AG343700 Rh5DG191000
rosa_wichuraiana	Rw1G018100 Rw3G017000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	102
AgsI	TTSAA	1 cut(s)	268
AjnI	CCWGG	1 cut(s)	217
AluBI	AGCT	2 cut(s)	86, 275
AluI	AGCT	2 cut(s)	86, 275
Alw26I	GTCTC	2 cut(s)	23, 239
ApeKI	GCWGC	1 cut(s)	125
AsuHPI	GGTGA	1 cut(s)	199
BbvI	GCAGC	1 cut(s)	112
BccI	CCATC	1 cut(s)	162
BciT130I	CCWGG	1 cut(s)	219
BcoDI	GTCTC	2 cut(s)	23, 239
BisI	GCNGC	1 cut(s)	126
BlsI	GCNGC	1 cut(s)	127
Bme1390I	CCNGG	1 cut(s)	219
BmrFI	CCNGG	1 cut(s)	219
BmsI	GCATC	3 cut(s)	42, 48, 123
BsaI	GGTCTC	1 cut(s)	239
BsaJI	CCNNGG	2 cut(s)	66, 218
Bse3DI	GCAATG	1 cut(s)	179
BseBI	CCWGG	1 cut(s)	219
BseDI	CCNNGG	2 cut(s)	66, 218
BseGI	GGATG	1 cut(s)	173
BseMI	GCAATG	1 cut(s)	179
BseXI	GCAGC	1 cut(s)	112
BslFI	GGGAC	1 cut(s)	235
BsmAI	GTCTC	2 cut(s)	23, 239
BsmFI	GGGAC	1 cut(s)	235
Bso31I	GGTCTC	1 cut(s)	239
Bsp143I	GATC	1 cut(s)	91
Bsp19I	CCATGG	1 cut(s)	66
BspTNI	GGTCTC	1 cut(s)	239
BsrDI	GCAATG	1 cut(s)	179
BssECI	CCNNGG	2 cut(s)	66, 218
BssMI	GATC	1 cut(s)	91
BssT1I	CCWWGG	1 cut(s)	66
Bst2UI	CCWGG	1 cut(s)	219
BstC8I	GCNNGC	1 cut(s)	63
BstDSI	CCRYGG	1 cut(s)	66
BstF5I	GGATG	1 cut(s)	173
BstKTI	GATC	1 cut(s)	94
BstMAI	GTCTC	2 cut(s)	23, 239
BstMBI	GATC	1 cut(s)	91
BstMWI	GCNNNNNNNGC	1 cut(s)	83
BstNI	CCWGG	1 cut(s)	219
BstSCI	CCNGG	1 cut(s)	217
BstV1I	GCAGC	1 cut(s)	112
BtgI	CCRYGG	1 cut(s)	66
BtsCI	GGATG	1 cut(s)	173
Cac8I	GCNNGC	1 cut(s)	63
CviAII	CATG	2 cut(s)	67, 98
CviJI	RGCY	4 cut(s)	65, 71, 86, 275
CviKI_1	RGCY	4 cut(s)	65, 71, 86, 275
DpnI	GATC	1 cut(s)	93
DpnII	GATC	1 cut(s)	91
Eco130I	CCWWGG	1 cut(s)	66
Eco31I	GGTCTC	1 cut(s)	239
Eco57I	CTGAAG	1 cut(s)	102
EcoRII	CCWGG	1 cut(s)	217
EcoT14I	CCWWGG	1 cut(s)	66
ErhI	CCWWGG	1 cut(s)	66
FaeI	CATG	2 cut(s)	70, 101
FaiI	YATR	6 cut(s)	38, 68, 99, 159, 230, 232
FaqI	GGGAC	1 cut(s)	235
FatI	CATG	2 cut(s)	66, 97
Fnu4HI	GCNGC	1 cut(s)	126
FokI	GGATG	1 cut(s)	180
Fsp4HI	GCNGC	1 cut(s)	126
GluI	GCNGC	1 cut(s)	126
Hin1II	CATG	2 cut(s)	70, 101
HphI	GGTGA	1 cut(s)	199
Hpy188I	TCNGA	1 cut(s)	82
Hpy188III	TCNNGA	1 cut(s)	89
HpyCH4V	TGCA	4 cut(s)	55, 61, 97, 114
HpyF10VI	GCNNNNNNNGC	1 cut(s)	83
Hsp92II	CATG	2 cut(s)	70, 101
Kzo9I	GATC	1 cut(s)	91
LmnI	GCTCC	1 cut(s)	272
LpnPI	CCDG	2 cut(s)	204, 231
Lsp1109I	GCAGC	1 cut(s)	112
LweI	GCATC	3 cut(s)	42, 48, 123
MalI	GATC	1 cut(s)	93
MboI	GATC	1 cut(s)	91
MboII	GAAGA	2 cut(s)	61, 196
MluCI	AATT	1 cut(s)	253
MnlI	CCTC	1 cut(s)	147
MseI	TTAA	1 cut(s)	252
MspR9I	CCNGG	1 cut(s)	219
MvaI	CCWGG	1 cut(s)	219
MwoI	GCNNNNNNNGC	1 cut(s)	83
NcoI	CCATGG	1 cut(s)	66
NdeII	GATC	1 cut(s)	91
NlaIII	CATG	2 cut(s)	70, 101
PkrI	GCNGC	1 cut(s)	127
Psp6I	CCWGG	1 cut(s)	217
PspGI	CCWGG	1 cut(s)	217
SaqAI	TTAA	1 cut(s)	252
SatI	GCNGC	1 cut(s)	126
Sau3AI	GATC	1 cut(s)	91
ScrFI	CCNGG	1 cut(s)	219
SetI	ASST	3 cut(s)	88, 158, 277
SfaNI	GCATC	3 cut(s)	42, 48, 123
SgeI	CNNG	9 cut(s)	74, 79, 84, 101, 110, 163, 230, 231, 280
Sse9I	AATT	1 cut(s)	253
StyD4I	CCNGG	1 cut(s)	217
StyI	CCWWGG	1 cut(s)	66
TasI	AATT	1 cut(s)	253
Tru1I	TTAA	1 cut(s)	252
Tru9I	TTAA	1 cut(s)	252
TseI	GCWGC	1 cut(s)	125
TspDTI	ATGAA	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.