Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000857

Physical Location & Seq

Genomic Coordinates Reverse (-)

37800352 .. 37800708

Gene Structure 357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00029230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGAAAACAATGGGTCGAGGTGTGCTCTTCAAGGTGTTATGTACCCACAAGTGAATGACCTTAACCGGCAGTTGATGCCGGAATCTAAGGCCGTTGATTGTTCAACCGGTCCGGATTTGTGCCCGAGTGACATCATCATGACCGTTCCGTTCTTTTATCCGCCTCATCGAAACCTCGCTCCATGCTTCGAGTGTTGGCGAAGCTTGGGGACTCGATCTCAAAGCGCACACTTCCGGGGTGTGAAATTTAGTGTGCTATCATATAATGTCCTTGGTAATCTTTATACCGACCCATTTAGGTACTCTTACCGCCGTAATGGGCTAGGTCTTGGGAATATCGTTAGCAGAATTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

Exo_endo_phos zf-C6H2

Protein Analysis

118

Amino Acids

13.39

Weight (kDa)

8.93

Isoelectric Point (pI)

58.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000857)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36230
fragaria_vesca	FvH4_6g18790 FvH4_6g18790 FvH4_6g18790 FvH4_6g18790 FvH4_6g18790 FvH4_6g18790
malus_domestica	MD12G1036500.v1.1 MD14G1023300.v1.1
prunus_persica	Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1
pyrus_communis	pycom12g02400 pycom14g02220 pycom14g02230
rosa_chinensis	RchiOBHm_Chr1g0324901 RchiOBHm_Chr1g0350151 RchiOBHm_Chr3g0473801 RchiOBHm_Chr4g0393091 RchiOBHm_Chr4g0409701 RchiOBHm_Chr5g0027171
rosa_laevigata	RLG00000014193 RLG00000023983 RLG00000035737
rosa_multiflora	Rmu_sc0001207.1_g000028 Rmu_sc0002986.1_g000013 Rmu_sc0007035.1_g000005 Rmu_sc0016122.1_g000001 Rmu_sc0037919.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029230 Rroxscaffold_1G00029310 Rroxscaffold_2G00114250 Rroxscaffold_3G00260930 Rroxscaffold_3G00260940 Rroxscaffold_4G00311820 Rroxscaffold_4G00332560 Rroxscaffold_5G00338520 Rroxscaffold_5G00355640 Rroxscaffold_6G00407790
rosa_rugosa	Rorug01G0107500 Rorug02G0045900 Rorug03G0135600 Rorug06G0225600 Rorug07G0319400 Rorug07G0330900
rosa_samantha	Rh1AG080400 Rh1AG119900 Rh1AG120000 Rh1AG233100 Rh1CG115000 Rh1CG217700 Rh2BG241500 Rh2BG353000 Rh2DG556200 Rh3AG186100 Rh3AG202300 Rh3BG214400 Rh3CG211200 Rh3DG210400 Rh3DG227900 Rh5AG343700 Rh5DG191000
rosa_wichuraiana	Rw1G018100 Rw3G017000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	112
AciI	CCGC	2 cut(s)	161, 310
AcsI	RAATTY	2 cut(s)	245, 348
AfaI	GTAC	2 cut(s)	44, 302
AgeI	ACCGGT	1 cut(s)	107
AgsI	TTSAA	2 cut(s)	32, 105
AluBI	AGCT	1 cut(s)	204
AluI	AGCT	1 cut(s)	204
Alw21I	GWGCWC	1 cut(s)	28
Ama87I	CYCGRG	1 cut(s)	124
Aor13HI	TCCGGA	1 cut(s)	112
AoxI	GGCC	1 cut(s)	90
ApoI	RAATTY	2 cut(s)	245, 348
AsiGI	ACCGGT	1 cut(s)	107
AspLEI	GCGC	1 cut(s)	227
AspS9I	GGNCC	1 cut(s)	110
AsuC2I	CCSGG	1 cut(s)	236
AvaI	CYCGRG	1 cut(s)	124
AvaII	GGWCC	1 cut(s)	110
BaeGI	GKGCMC	1 cut(s)	125
Bbv12I	GWGCWC	1 cut(s)	28
BceAI	ACGGC	2 cut(s)	77, 297
BcnI	CCSGG	1 cut(s)	236
BfaI	CTAG	1 cut(s)	323
Bme1390I	CCNGG	1 cut(s)	236
Bme18I	GGWCC	1 cut(s)	110
BmeT110I	CYCGRG	1 cut(s)	124
BmgT120I	GGNCC	1 cut(s)	110
BmrFI	CCNGG	1 cut(s)	236
BmsI	GCATC	1 cut(s)	66
BplI	GAGNNNNNCTC	2 cut(s)	10, 42
BpuMI	CCSGG	1 cut(s)	236
BsaJI	CCNNGG	2 cut(s)	235, 271
BsaWI	WCCGGW	2 cut(s)	107, 112
Bse118I	RCCGGY	2 cut(s)	66, 107
BseAI	TCCGGA	1 cut(s)	112
BseDI	CCNNGG	2 cut(s)	235, 271
BseSI	GKGCMC	1 cut(s)	125
BshFI	GGCC	1 cut(s)	92
BshTI	ACCGGT	1 cut(s)	107
BsiHKAI	GWGCWC	1 cut(s)	28
BsiHKCI	CYCGRG	1 cut(s)	124
BsiSI	CCGG	5 cut(s)	67, 80, 108, 113, 235
BslFI	GGGAC	1 cut(s)	223
BsmFI	GGGAC	1 cut(s)	223
BsnI	GGCC	1 cut(s)	92
BsoBI	CYCGRG	1 cut(s)	124
Bsp1286I	GDGCHC	2 cut(s)	28, 125
Bsp13I	TCCGGA	1 cut(s)	112
Bsp143I	GATC	1 cut(s)	215
BspACI	CCGC	2 cut(s)	161, 310
BspANI	GGCC	1 cut(s)	92
BspEI	TCCGGA	1 cut(s)	112
BspHI	TCATGA	1 cut(s)	138
BspQI	GCTCTTC	1 cut(s)	33
BsrFI	RCCGGY	2 cut(s)	66, 107
BssAI	RCCGGY	2 cut(s)	66, 107
BssECI	CCNNGG	2 cut(s)	235, 271
BssMI	GATC	1 cut(s)	215
BssT1I	CCWWGG	1 cut(s)	271
Bst4CI	ACNGT	1 cut(s)	145
Bst6I	CTCTTC	1 cut(s)	33
BstAPI	GCANNNNNTGC	1 cut(s)	76
BstDEI	CTNAG	1 cut(s)	87
BstHHI	GCGC	1 cut(s)	227
BstKTI	GATC	1 cut(s)	218
BstMBI	GATC	1 cut(s)	215
BstMWI	GCNNNNNNNGC	1 cut(s)	76
BstSCI	CCNGG	1 cut(s)	234
BstSLI	GKGCMC	1 cut(s)	125
BsuRI	GGCC	1 cut(s)	92
CciI	TCATGA	1 cut(s)	138
CfoI	GCGC	1 cut(s)	227
Cfr10I	RCCGGY	2 cut(s)	66, 107
Cfr13I	GGNCC	1 cut(s)	110
CpoI	CGGWCCG	1 cut(s)	110
Csp6I	GTAC	2 cut(s)	43, 301
CspAI	ACCGGT	1 cut(s)	107
CspI	CGGWCCG	1 cut(s)	110
CviAII	CATG	2 cut(s)	139, 183
CviJI	RGCY	3 cut(s)	92, 204, 322
CviKI_1	RGCY	3 cut(s)	92, 204, 322
CviQI	GTAC	2 cut(s)	43, 301
DdeI	CTNAG	1 cut(s)	87
DpnI	GATC	1 cut(s)	217
DpnII	GATC	1 cut(s)	215
Eam1104I	CTCTTC	1 cut(s)	33
EarI	CTCTTC	1 cut(s)	33
EciI	GGCGGA	1 cut(s)	150
Eco130I	CCWWGG	1 cut(s)	271
Eco47I	GGWCC	1 cut(s)	110
Eco88I	CYCGRG	1 cut(s)	124
EcoT14I	CCWWGG	1 cut(s)	271
ErhI	CCWWGG	1 cut(s)	271
FaeI	CATG	2 cut(s)	142, 186
FaiI	YATR	6 cut(s)	41, 140, 184, 262, 264, 285
FaqI	GGGAC	1 cut(s)	223
FatI	CATG	2 cut(s)	138, 182
FspBI	CTAG	1 cut(s)	323
GlaI	GCGC	1 cut(s)	226
HaeIII	GGCC	1 cut(s)	92
HapII	CCGG	5 cut(s)	67, 80, 108, 113, 235
HhaI	GCGC	1 cut(s)	227
Hin1II	CATG	2 cut(s)	142, 186
Hin6I	GCGC	1 cut(s)	225
HinP1I	GCGC	1 cut(s)	225
HindIII	AAGCTT	1 cut(s)	202
HinfI	GANTC	2 cut(s)	83, 211
HpaII	CCGG	5 cut(s)	67, 80, 108, 113, 235
Hpy188III	TCNNGA	2 cut(s)	113, 139
HpyCH4III	ACNGT	1 cut(s)	145
HpyF10VI	GCNNNNNNNGC	1 cut(s)	76
HpyF3I	CTNAG	1 cut(s)	87
Hsp92II	CATG	2 cut(s)	142, 186
HspAI	GCGC	1 cut(s)	225
Kpn2I	TCCGGA	1 cut(s)	112
Kzo9I	GATC	1 cut(s)	215
LguI	GCTCTTC	1 cut(s)	33
LmnI	GCTCC	1 cut(s)	184
LpnPI	CCDG	5 cut(s)	80, 93, 121, 126, 248
LweI	GCATC	1 cut(s)	66
MaeI	CTAG	1 cut(s)	323
MaeIII	GTNAC	1 cut(s)	128
MalI	GATC	1 cut(s)	217
MboI	GATC	1 cut(s)	215
MboII	GAAGA	1 cut(s)	20
MhlI	GDGCHC	2 cut(s)	28, 125
MluCI	AATT	2 cut(s)	245, 348
MlyI	GAGTC	1 cut(s)	205
MnlI	CCTC	3 cut(s)	12, 174, 185
MroI	TCCGGA	1 cut(s)	112
MseI	TTAA	1 cut(s)	63
MslI	CAYNNNNRTG	1 cut(s)	137
MspI	CCGG	5 cut(s)	67, 80, 108, 113, 235
MspR9I	CCNGG	1 cut(s)	236
MwoI	GCNNNNNNNGC	1 cut(s)	76
NciI	CCSGG	1 cut(s)	236
NdeII	GATC	1 cut(s)	215
NlaIII	CATG	2 cut(s)	142, 186
NmuCI	GTSAC	1 cut(s)	128
PagI	TCATGA	1 cut(s)	138
PciSI	GCTCTTC	1 cut(s)	33
PfeI	GAWTC	1 cut(s)	83
PinAI	ACCGGT	1 cut(s)	107
PleI	GAGTC	1 cut(s)	205
PpsI	GAGTC	1 cut(s)	205
PspPI	GGNCC	1 cut(s)	110
RsaI	GTAC	2 cut(s)	44, 302
RsaNI	GTAC	2 cut(s)	43, 301
RseI	CAYNNNNRTG	1 cut(s)	137
Rsr2I	CGGWCCG	1 cut(s)	110
RsrII	CGGWCCG	1 cut(s)	110
SapI	GCTCTTC	1 cut(s)	33
SaqAI	TTAA	1 cut(s)	63
Sau3AI	GATC	1 cut(s)	215
Sau96I	GGNCC	1 cut(s)	110
SchI	GAGTC	1 cut(s)	205
ScrFI	CCNGG	1 cut(s)	236
SduI	GDGCHC	2 cut(s)	28, 125
SetI	ASST	7 cut(s)	23, 37, 63, 177, 206, 302, 328
SfaNI	GCATC	1 cut(s)	66
SinI	GGWCC	1 cut(s)	110
SmiMI	CAYNNNNRTG	1 cut(s)	137
Sse9I	AATT	2 cut(s)	245, 348
SsiI	CCGC	2 cut(s)	161, 310
SspMI	CTAG	1 cut(s)	323
StyD4I	CCNGG	1 cut(s)	234
StyI	CCWWGG	1 cut(s)	271
TaaI	ACNGT	1 cut(s)	145
TaqI	TCGA	4 cut(s)	17, 169, 189, 214
TasI	AATT	2 cut(s)	245, 348
TfiI	GAWTC	1 cut(s)	83
Tru1I	TTAA	1 cut(s)	63
Tru9I	TTAA	1 cut(s)	63
TseFI	GTSAC	1 cut(s)	128
Tsp45I	GTSAC	1 cut(s)	128
TspGWI	ACGGA	1 cut(s)	138
VpaK11BI	GGWCC	1 cut(s)	110
XapI	RAATTY	2 cut(s)	245, 348
XspI	CTAG	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.