Rh2DG556200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000857
Physical Location & Seq
Forward (+)
78616124 .. 78616412
289 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG556200.1

Sequence Viewer

Length: 213 bp
ATGTTGGTCTGGCCGGCCCAGATTGGAGCTACTTTCCCTCTCAACTCAAACCCTAGCCCCTCCTTCTCTTGTCTCACAGCTCGCCTGAGGCTACTGAATGCAATCATGGCCGACGTCGCCACCCTGTCGTGTGCTCGTTGCAGCAAACCCGCCAATCTTCACTATAATCTTGATGCTACTGAATCAGAAATACTTGATTCTGAGAATTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

70

Amino Acids

7.55

Weight (kDa)

4.95

Isoelectric Point (pI)

69.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 117
AciI CCGC 1 cut(s) 150
AcoI YGGCCR 2 cut(s) 11, 108
AcsI RAATTY 1 cut(s) 205
AcyI GRCGYC 1 cut(s) 114
AluBI AGCT 2 cut(s) 29, 80
AluI AGCT 2 cut(s) 29, 80
Alw21I GWGCWC 1 cut(s) 136
Alw26I GTCTC 1 cut(s) 77
AoxI GGCC 3 cut(s) 11, 15, 108
ApeKI GCWGC 1 cut(s) 141
ApoI RAATTY 1 cut(s) 205
AspS9I GGNCC 1 cut(s) 16
AxyI CCTNAGG 1 cut(s) 86
Bbv12I GWGCWC 1 cut(s) 136
BbvI GCAGC 1 cut(s) 153
BcoDI GTCTC 1 cut(s) 77
BfaI CTAG 1 cut(s) 54
BisI GCNGC 1 cut(s) 142
BlsI GCNGC 1 cut(s) 143
BmgT120I GGNCC 1 cut(s) 16
BmsI GCATC 1 cut(s) 163
BsaHI GRCGYC 1 cut(s) 114
Bse118I RCCGGY 1 cut(s) 13
Bse21I CCTNAGG 1 cut(s) 86
BseMII CTCAG 2 cut(s) 77, 192
BseXI GCAGC 1 cut(s) 153
BshFI GGCC 3 cut(s) 13, 17, 110
BsiHKAI GWGCWC 1 cut(s) 136
BsiSI CCGG 1 cut(s) 14
BsmAI GTCTC 1 cut(s) 77
BsmI GAATGC 1 cut(s) 103
BsnI GGCC 3 cut(s) 13, 17, 110
Bsp1286I GDGCHC 1 cut(s) 136
BspACI CCGC 1 cut(s) 150
BspANI GGCC 3 cut(s) 13, 17, 110
BspCNI CTCAG 2 cut(s) 78, 193
BsrFI RCCGGY 1 cut(s) 13
BssAI RCCGGY 1 cut(s) 13
BssNI GRCGYC 1 cut(s) 114
BstACI GRCGYC 1 cut(s) 114
BstC8I GCNNGC 2 cut(s) 15, 82
BstDEI CTNAG 2 cut(s) 86, 201
BstMAI GTCTC 1 cut(s) 77
BstMWI GCNNNNNNNGC 2 cut(s) 107, 116
BstV1I GCAGC 1 cut(s) 153
Bsu36I CCTNAGG 1 cut(s) 86
BsuRI GGCC 3 cut(s) 13, 17, 110
Cac8I GCNNGC 2 cut(s) 15, 82
Cfr10I RCCGGY 1 cut(s) 13
Cfr13I GGNCC 1 cut(s) 16
CviAII CATG 1 cut(s) 106
CviJI RGCY 7 cut(s) 13, 17, 29, 57, 80, 91, 110
CviKI_1 RGCY 7 cut(s) 13, 17, 29, 57, 80, 91, 110
DdeI CTNAG 2 cut(s) 86, 201
EaeI YGGCCR 2 cut(s) 11, 108
Eco81I CCTNAGG 1 cut(s) 86
EcoRI GAATTC 1 cut(s) 205
FaeI CATG 1 cut(s) 109
FaiI YATR 2 cut(s) 107, 165
FatI CATG 1 cut(s) 105
FauI CCCGC 1 cut(s) 157
Fnu4HI GCNGC 1 cut(s) 142
FseI GGCCGGCC 1 cut(s) 17
Fsp4HI GCNGC 1 cut(s) 142
FspBI CTAG 1 cut(s) 54
GluI GCNGC 1 cut(s) 142
HaeIII GGCC 3 cut(s) 13, 17, 110
HapII CCGG 1 cut(s) 14
Hin1I GRCGYC 1 cut(s) 114
Hin1II CATG 1 cut(s) 109
HinfI GANTC 2 cut(s) 182, 197
HpaII CCGG 1 cut(s) 14
Hpy188I TCNGA 2 cut(s) 187, 202
Hpy188III TCNNGA 2 cut(s) 170, 210
Hpy99I CGWCG 2 cut(s) 116, 119
HpyAV CCTTC 1 cut(s) 73
HpyCH4IV ACGT 1 cut(s) 114
HpyCH4V TGCA 2 cut(s) 101, 141
HpyF10VI GCNNNNNNNGC 2 cut(s) 107, 116
HpyF3I CTNAG 2 cut(s) 86, 201
HpySE526I ACGT 1 cut(s) 114
Hsp92I GRCGYC 1 cut(s) 114
Hsp92II CATG 1 cut(s) 109
KroI GCCGGC 1 cut(s) 13
KroNI GCCGGC 1 cut(s) 15
LmnI GCTCC 1 cut(s) 26
LpnPI CCDG 4 cut(s) 27, 32, 98, 137
Lsp1109I GCAGC 1 cut(s) 153
LweI GCATC 1 cut(s) 163
MaeI CTAG 1 cut(s) 54
MaeII ACGT 1 cut(s) 114
MboII GAAGA 1 cut(s) 149
MhlI GDGCHC 1 cut(s) 136
MluCI AATT 1 cut(s) 205
MnlI CCTC 3 cut(s) 48, 70, 81
MroNI GCCGGC 1 cut(s) 13
MspI CCGG 1 cut(s) 14
Mva1269I GAATGC 1 cut(s) 103
MwoI GCNNNNNNNGC 2 cut(s) 107, 116
NaeI GCCGGC 1 cut(s) 15
NgoMIV GCCGGC 1 cut(s) 13
NlaIII CATG 1 cut(s) 109
PctI GAATGC 1 cut(s) 103
PdiI GCCGGC 1 cut(s) 15
PfeI GAWTC 2 cut(s) 182, 197
PkrI GCNGC 1 cut(s) 143
PspPI GGNCC 1 cut(s) 16
RigI GGCCGGCC 1 cut(s) 17
SatI GCNGC 1 cut(s) 142
Sau96I GGNCC 1 cut(s) 16
SduI GDGCHC 1 cut(s) 136
SetI ASST 3 cut(s) 31, 82, 117
SfaNI GCATC 1 cut(s) 163
Sse9I AATT 1 cut(s) 205
SsiI CCGC 1 cut(s) 150
SspMI CTAG 1 cut(s) 54
TaiI ACGT 1 cut(s) 117
TasI AATT 1 cut(s) 205
TfiI GAWTC 2 cut(s) 182, 197
TseI GCWGC 1 cut(s) 141
XapI RAATTY 1 cut(s) 205
XspI CTAG 1 cut(s) 54
ZraI GACGTC 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.