Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0000857

Physical Location & Seq

Genomic Coordinates Reverse (-)

13724228 .. 13749606

Gene Structure 25379 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG080400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGTTGGTCTGGCCGGCCCAGATTGGAGCTACTTTCCCTCTCAACTCAAACCCTAGCCCCTCCTCCTCTTGTCTCACAGCTCGCCTGAGGCTACTGAATGCGATCATGGCCGACGTCGCCACCCTGTCGTGTGCTCGTTGCAGCAAATCCGCCAATCTTCAGTGTCCCAAGTATGTGGAATTGAAGCTTCCTCATGAAGATGCCGCTTTCTGGGCTGTTTGGATATCTCTGGGAGGTAGGCTTGGGTTCGCTTTGGAAGAGGGGAAAGTGAAACAGATTGTTGGGTCGACGCTTTCGGATTCTAAGGAAGATGGGCTGGCTCTGGTTACCAATTTTGTGTCAGATAAGTCGGCGGGGGAGTATGCAAAGATGTATAAGGAAGATGGGCTTACAGGTGGCCATGTGATAATGCTGGGGGCAGATCCTTTGAGTAGAGCTGCTGCCATTGAAGCTCTGCATGCCTATTCTGATGTAACTAAAAGAATCATATCATCAAAAAACAATACCACAAAATCAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0000162 GO:0003674 GO:0003824 GO:0003949 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

His_biosynth

Protein Analysis

173

Amino Acids

18.43

Weight (kDa)

8.34

Isoelectric Point (pI)

39.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000857)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36230
fragaria_vesca	FvH4_6g18790 FvH4_6g18790 FvH4_6g18790 FvH4_6g18790 FvH4_6g18790 FvH4_6g18790
malus_domestica	MD12G1036500.v1.1 MD14G1023300.v1.1
prunus_persica	Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1
pyrus_communis	pycom12g02400 pycom14g02220 pycom14g02230
rosa_chinensis	RchiOBHm_Chr1g0324901 RchiOBHm_Chr1g0350151 RchiOBHm_Chr3g0473801 RchiOBHm_Chr4g0393091 RchiOBHm_Chr4g0409701 RchiOBHm_Chr5g0027171
rosa_laevigata	RLG00000014193 RLG00000023983 RLG00000035737
rosa_multiflora	Rmu_sc0001207.1_g000028 Rmu_sc0002986.1_g000013 Rmu_sc0007035.1_g000005 Rmu_sc0016122.1_g000001 Rmu_sc0037919.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029230 Rroxscaffold_1G00029310 Rroxscaffold_2G00114250 Rroxscaffold_3G00260930 Rroxscaffold_3G00260940 Rroxscaffold_4G00311820 Rroxscaffold_4G00332560 Rroxscaffold_5G00338520 Rroxscaffold_5G00355640 Rroxscaffold_6G00407790
rosa_rugosa	Rorug01G0107500 Rorug02G0045900 Rorug03G0135600 Rorug06G0225600 Rorug07G0319400 Rorug07G0330900
rosa_samantha	Rh1AG080400 Rh1AG119900 Rh1AG120000 Rh1AG233100 Rh1CG115000 Rh1CG217700 Rh2BG241500 Rh2BG353000 Rh2DG556200 Rh3AG186100 Rh3AG202300 Rh3BG214400 Rh3CG211200 Rh3DG210400 Rh3DG227900 Rh5AG343700 Rh5DG191000
rosa_wichuraiana	Rw1G018100 Rw3G017000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	117
AccI	GTMKAC	1 cut(s)	287
AciI	CCGC	3 cut(s)	150, 204, 353
AclWI	GGATC	1 cut(s)	416
AcoI	YGGCCR	3 cut(s)	11, 108, 397
AcuI	CTGAAG	1 cut(s)	143
AcyI	GRCGYC	1 cut(s)	114
AfiI	CCNNNNNNNGG	1 cut(s)	210
AgsI	TTSAA	2 cut(s)	184, 449
AluBI	AGCT	6 cut(s)	29, 80, 187, 437, 452, 518
AluI	AGCT	6 cut(s)	29, 80, 187, 437, 452, 518
Alw21I	GWGCWC	1 cut(s)	136
Alw26I	GTCTC	1 cut(s)	77
AlwI	GGATC	1 cut(s)	416
AoxI	GGCC	4 cut(s)	11, 15, 108, 397
ApeKI	GCWGC	3 cut(s)	141, 437, 440
AspS9I	GGNCC	1 cut(s)	16
AxyI	CCTNAGG	1 cut(s)	86
BalI	TGGCCA	1 cut(s)	399
Bbv12I	GWGCWC	1 cut(s)	136
BbvI	GCAGC	3 cut(s)	153, 424, 427
BccI	CCATC	2 cut(s)	305, 377
BcoDI	GTCTC	1 cut(s)	77
BfaI	CTAG	1 cut(s)	54
BisI	GCNGC	4 cut(s)	142, 204, 438, 441
BlsI	GCNGC	4 cut(s)	143, 205, 439, 442
BmgT120I	GGNCC	1 cut(s)	16
BmsI	GCATC	1 cut(s)	190
BsaHI	GRCGYC	1 cut(s)	114
Bsc4I	CCNNNNNNNGG	1 cut(s)	210
Bse118I	RCCGGY	1 cut(s)	13
Bse21I	CCTNAGG	1 cut(s)	86
BseLI	CCNNNNNNNGG	1 cut(s)	210
BseMII	CTCAG	1 cut(s)	77
BseRI	GAGGAG	2 cut(s)	52, 55
BseXI	GCAGC	3 cut(s)	153, 424, 427
BseYI	CCCAGC	1 cut(s)	412
BshFI	GGCC	4 cut(s)	13, 17, 110, 399
BsiHKAI	GWGCWC	1 cut(s)	136
BsiSI	CCGG	1 cut(s)	14
BslFI	GGGAC	1 cut(s)	150
BslI	CCNNNNNNNGG	1 cut(s)	210
BsmAI	GTCTC	1 cut(s)	77
BsmFI	GGGAC	1 cut(s)	150
BsmI	GAATGC	1 cut(s)	103
BsnI	GGCC	4 cut(s)	13, 17, 110, 399
Bsp1286I	GDGCHC	1 cut(s)	136
Bsp143I	GATC	2 cut(s)	102, 421
BspACI	CCGC	3 cut(s)	150, 204, 353
BspANI	GGCC	4 cut(s)	13, 17, 110, 399
BspCNI	CTCAG	1 cut(s)	78
BspHI	TCATGA	1 cut(s)	193
BspPI	GGATC	1 cut(s)	416
BsrFI	RCCGGY	1 cut(s)	13
BssAI	RCCGGY	1 cut(s)	13
BssMI	GATC	2 cut(s)	102, 421
BssNI	GRCGYC	1 cut(s)	114
Bst6I	CTCTTC	1 cut(s)	252
BstACI	GRCGYC	1 cut(s)	114
BstC8I	GCNNGC	4 cut(s)	15, 82, 318, 459
BstDEI	CTNAG	2 cut(s)	86, 303
BstEII	GGTNACC	1 cut(s)	325
BstKTI	GATC	2 cut(s)	105, 424
BstMAI	GTCTC	1 cut(s)	77
BstMBI	GATC	2 cut(s)	102, 421
BstMWI	GCNNNNNNNGC	5 cut(s)	107, 116, 212, 449, 458
BstNSI	RCATGY	1 cut(s)	461
BstPI	GGTNACC	1 cut(s)	325
BstV1I	GCAGC	3 cut(s)	153, 424, 427
BstX2I	RGATCY	1 cut(s)	421
BstXI	CCANNNNNNTGG	1 cut(s)	175
BstYI	RGATCY	1 cut(s)	421
Bsu36I	CCTNAGG	1 cut(s)	86
BsuRI	GGCC	4 cut(s)	13, 17, 110, 399
BtsIMutI	CAGTG	1 cut(s)	167
Cac8I	GCNNGC	4 cut(s)	15, 82, 318, 459
CciI	TCATGA	1 cut(s)	193
Cfr10I	RCCGGY	1 cut(s)	13
Cfr13I	GGNCC	1 cut(s)	16
CseI	GACGC	1 cut(s)	298
CviAII	CATG	4 cut(s)	106, 194, 401, 458
DdeI	CTNAG	2 cut(s)	86, 303
DpnI	GATC	2 cut(s)	104, 423
DpnII	GATC	2 cut(s)	102, 421
EaeI	YGGCCR	3 cut(s)	11, 108, 397
Eam1104I	CTCTTC	1 cut(s)	252
EarI	CTCTTC	1 cut(s)	252
EciI	GGCGGA	1 cut(s)	139
Eco32I	GATATC	1 cut(s)	225
Eco57I	CTGAAG	1 cut(s)	143
Eco81I	CCTNAGG	1 cut(s)	86
Eco91I	GGTNACC	1 cut(s)	325
EcoO65I	GGTNACC	1 cut(s)	325
EcoRV	GATATC	1 cut(s)	225
FaeI	CATG	4 cut(s)	109, 197, 404, 461
FaiI	YATR	8 cut(s)	107, 174, 195, 363, 375, 402, 459, 488
FalI	AAGNNNNNCTT	2 cut(s)	372, 404
FaqI	GGGAC	1 cut(s)	150
FatI	CATG	4 cut(s)	105, 193, 400, 457
FauI	CCCGC	1 cut(s)	346
FblI	GTMKAC	1 cut(s)	287
Fnu4HI	GCNGC	4 cut(s)	142, 204, 438, 441
FseI	GGCCGGCC	1 cut(s)	17
Fsp4HI	GCNGC	4 cut(s)	142, 204, 438, 441
FspBI	CTAG	1 cut(s)	54
GluI	GCNGC	4 cut(s)	142, 204, 438, 441
GsaI	CCCAGC	1 cut(s)	416
HaeIII	GGCC	4 cut(s)	13, 17, 110, 399
HapII	CCGG	1 cut(s)	14
HgaI	GACGC	1 cut(s)	298
Hin1I	GRCGYC	1 cut(s)	114
Hin1II	CATG	4 cut(s)	109, 197, 404, 461
HincII	GTYRAC	1 cut(s)	288
HindII	GTYRAC	1 cut(s)	288
HindIII	AAGCTT	1 cut(s)	185
HinfI	GANTC	2 cut(s)	299, 483
HpaII	CCGG	1 cut(s)	14
Hpy166II	GTNNAC	1 cut(s)	288
Hpy188I	TCNGA	3 cut(s)	298, 343, 469
Hpy188III	TCNNGA	1 cut(s)	194
Hpy8I	GTNNAC	1 cut(s)	288
Hpy99I	CGWCG	3 cut(s)	116, 119, 292
HpyCH4IV	ACGT	1 cut(s)	114
HpyCH4V	TGCA	3 cut(s)	141, 365, 457
HpyF10VI	GCNNNNNNNGC	5 cut(s)	107, 116, 212, 449, 458
HpyF3I	CTNAG	2 cut(s)	86, 303
HpySE526I	ACGT	1 cut(s)	114
Hsp92I	GRCGYC	1 cut(s)	114
Hsp92II	CATG	4 cut(s)	109, 197, 404, 461
KroI	GCCGGC	1 cut(s)	13
KroNI	GCCGGC	1 cut(s)	15
Kzo9I	GATC	2 cut(s)	102, 421
LmnI	GCTCC	1 cut(s)	26
Lsp1109I	GCAGC	3 cut(s)	153, 424, 427
LweI	GCATC	1 cut(s)	190
MaeI	CTAG	1 cut(s)	54
MaeII	ACGT	1 cut(s)	114
MaeIII	GTNAC	2 cut(s)	325, 472
MalI	GATC	2 cut(s)	104, 423
MboI	GATC	2 cut(s)	102, 421
MboII	GAAGA	5 cut(s)	149, 209, 269, 320, 392
MflI	RGATCY	1 cut(s)	421
MhlI	GDGCHC	1 cut(s)	136
MlsI	TGGCCA	1 cut(s)	399
MluCI	AATT	2 cut(s)	179, 331
MluNI	TGGCCA	1 cut(s)	399
MnlI	CCTC	8 cut(s)	48, 70, 73, 76, 81, 201, 227, 253
Mox20I	TGGCCA	1 cut(s)	399
MroNI	GCCGGC	1 cut(s)	13
MscI	TGGCCA	1 cut(s)	399
MseI	TTAA	1 cut(s)	520
MslI	CAYNNNNRTG	1 cut(s)	198
Msp20I	TGGCCA	1 cut(s)	399
MspI	CCGG	1 cut(s)	14
Mva1269I	GAATGC	1 cut(s)	103
MwoI	GCNNNNNNNGC	5 cut(s)	107, 116, 212, 449, 458
NaeI	GCCGGC	1 cut(s)	15
NdeII	GATC	2 cut(s)	102, 421
NgoMIV	GCCGGC	1 cut(s)	13
NlaIII	CATG	4 cut(s)	109, 197, 404, 461
NspI	RCATGY	1 cut(s)	461
PaeI	GCATGC	1 cut(s)	461
PagI	TCATGA	1 cut(s)	193
PctI	GAATGC	1 cut(s)	103
PdiI	GCCGGC	1 cut(s)	15
PfeI	GAWTC	2 cut(s)	299, 483
PkrI	GCNGC	4 cut(s)	143, 205, 439, 442
PspEI	GGTNACC	1 cut(s)	325
PspFI	CCCAGC	1 cut(s)	412
PspPI	GGNCC	1 cut(s)	16
PsuI	RGATCY	1 cut(s)	421
RigI	GGCCGGCC	1 cut(s)	17
RseI	CAYNNNNRTG	1 cut(s)	198
SalI	GTCGAC	1 cut(s)	286
SaqAI	TTAA	1 cut(s)	520
SatI	GCNGC	4 cut(s)	142, 204, 438, 441
Sau3AI	GATC	2 cut(s)	102, 421
Sau96I	GGNCC	1 cut(s)	16
SduI	GDGCHC	1 cut(s)	136
SetI	ASST	9 cut(s)	31, 82, 117, 189, 238, 397, 439, 454, 520
SfaNI	GCATC	1 cut(s)	190
SmiMI	CAYNNNNRTG	1 cut(s)	198
SphI	GCATGC	1 cut(s)	461
Sse9I	AATT	2 cut(s)	179, 331
SsiI	CCGC	3 cut(s)	150, 204, 353
SspMI	CTAG	1 cut(s)	54
TaiI	ACGT	1 cut(s)	117
TaqI	TCGA	1 cut(s)	287
TasI	AATT	2 cut(s)	179, 331
TauI	GCSGC	1 cut(s)	206
TfiI	GAWTC	2 cut(s)	299, 483
Tru1I	TTAA	1 cut(s)	520
Tru9I	TTAA	1 cut(s)	520
TscAI	CASTG	1 cut(s)	167
TseI	GCWGC	3 cut(s)	141, 437, 440
TspDTI	ATGAA	1 cut(s)	210
TspRI	CASTG	1 cut(s)	167
XceI	RCATGY	1 cut(s)	461
XmiI	GTMKAC	1 cut(s)	287
XspI	CTAG	1 cut(s)	54
ZraI	GACGTC	1 cut(s)	115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.