Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001207.1

Orthogroup ID

OG0000857

Physical Location & Seq

Genomic Coordinates Forward (+)

108986 .. 112608

Gene Structure 3623 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001207.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

atgaaaggctacgaagtagcctattctgatgatgaagaagacgacaggtcagtttattctgcctggtctgaagaagaagattcatttgaatctgagtcggattctgaagtagagtacttcaaatcaagacagatgaatatgttgaaactcaaaaattgggaagaaagcaagacagatgcaattgtgtctgcttatcaggtgaaccctgcccagactcgacctccattctcaacccagactcgacctcctcctaaactcgagctcctattcctcctcctctattctcaagcgaaatctgaagcgccgagatcccgacctcgatctaaaattgaagtaacagctctgaatcctgagcccggcctcgatctgagattggcagagttgaagaaattaaagaggaataagccccaccgaagtcggggttggagccctaaacccaaacacagcaacccaactgcactcaactgtgccgtttctaactctctcagtgactccgtgtctccgtctccgccgtttctgactctccgtctccgcctctccggcgatcgagtacccataagctgtgctgtttgtttccgaccctgtattgatatacacaaggggaaagtgaaacagattgttgggtcgacgctttcagattctaaggaagatgggccgactctggttaccaattttgagtcagatcagtcggcgggggagtatgcaaagatgtataaggaagatgggcttacaggtggccatgtgataatgctaggggcagatcctttgagtagagctgctgccattgaagctctgcatgcctattctggtgggtcaatagctagatgccttcttattgttgtgattcttttgcttttttatactttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0000162 GO:0003674 GO:0003824 GO:0003949 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

His_biosynth

Protein Analysis

289

Amino Acids

32.15

Weight (kDa)

6.55

Isoelectric Point (pI)

56.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000857)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36230
fragaria_vesca	FvH4_6g18790 FvH4_6g18790 FvH4_6g18790 FvH4_6g18790 FvH4_6g18790 FvH4_6g18790
malus_domestica	MD12G1036500.v1.1 MD14G1023300.v1.1
prunus_persica	Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1
pyrus_communis	pycom12g02400 pycom14g02220 pycom14g02230
rosa_chinensis	RchiOBHm_Chr1g0324901 RchiOBHm_Chr1g0350151 RchiOBHm_Chr3g0473801 RchiOBHm_Chr4g0393091 RchiOBHm_Chr4g0409701 RchiOBHm_Chr5g0027171
rosa_laevigata	RLG00000014193 RLG00000023983 RLG00000035737
rosa_multiflora	Rmu_sc0001207.1_g000028 Rmu_sc0002986.1_g000013 Rmu_sc0007035.1_g000005 Rmu_sc0016122.1_g000001 Rmu_sc0037919.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029230 Rroxscaffold_1G00029310 Rroxscaffold_2G00114250 Rroxscaffold_3G00260930 Rroxscaffold_3G00260940 Rroxscaffold_4G00311820 Rroxscaffold_4G00332560 Rroxscaffold_5G00338520 Rroxscaffold_5G00355640 Rroxscaffold_6G00407790
rosa_rugosa	Rorug01G0107500 Rorug02G0045900 Rorug03G0135600 Rorug06G0225600 Rorug07G0319400 Rorug07G0330900
rosa_samantha	Rh1AG080400 Rh1AG119900 Rh1AG120000 Rh1AG233100 Rh1CG115000 Rh1CG217700 Rh2BG241500 Rh2BG353000 Rh2DG556200 Rh3AG186100 Rh3AG202300 Rh3BG214400 Rh3CG211200 Rh3DG210400 Rh3DG227900 Rh5AG343700 Rh5DG191000
rosa_wichuraiana	Rw1G018100 Rw3G017000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	626
AciI	CCGC	3 cut(s)	509, 532, 692
AclWI	GGATC	2 cut(s)	303, 755
AcoI	YGGCCR	1 cut(s)	736
AcuI	CTGAAG	3 cut(s)	90, 126, 318
AfaI	GTAC	2 cut(s)	116, 552
AfiI	CCNNNNNNNGG	2 cut(s)	356, 418
AgsI	TTSAA	6 cut(s)	89, 121, 145, 332, 385, 788
AhdI	GACNNNNNGTC	3 cut(s)	46, 496, 525
AjnI	CCWGG	1 cut(s)	62
AjuI	GAANNNNNNNTTGG	2 cut(s)	406, 438
AluBI	AGCT	6 cut(s)	262, 341, 561, 776, 791, 821
AluI	AGCT	6 cut(s)	262, 341, 561, 776, 791, 821
Alw21I	GWGCWC	1 cut(s)	264
Alw26I	GTCTC	3 cut(s)	504, 510, 533
AlwI	GGATC	2 cut(s)	303, 755
Ama87I	CYCGRG	1 cut(s)	257
AoxI	GGCC	3 cut(s)	358, 653, 736
ApeKI	GCWGC	2 cut(s)	776, 779
AspLEI	GCGC	1 cut(s)	304
AspS9I	GGNCC	1 cut(s)	653
AsuC2I	CCSGG	1 cut(s)	357
AsuHPI	GGTGA	1 cut(s)	211
AvaI	CYCGRG	1 cut(s)	257
BalI	TGGCCA	1 cut(s)	738
BanII	GRGCYC	3 cut(s)	264, 357, 431
BbsI	GAAGAC	1 cut(s)	45
Bbv12I	GWGCWC	1 cut(s)	264
BbvI	GCAGC	2 cut(s)	763, 766
BccI	CCATC	2 cut(s)	644, 716
BceAI	ACGGC	2 cut(s)	455, 496
BciT130I	CCWGG	1 cut(s)	64
BcnI	CCSGG	1 cut(s)	357
BcoDI	GTCTC	3 cut(s)	504, 510, 533
BfaI	CTAG	2 cut(s)	752, 822
BfoI	RGCGCY	1 cut(s)	305
BglI	GCCNNNNNGGC	1 cut(s)	540
BisI	GCNGC	2 cut(s)	777, 780
BlsI	GCNGC	2 cut(s)	778, 781
BmcAI	AGTACT	1 cut(s)	116
Bme1390I	CCNGG	2 cut(s)	64, 357
BmeRI	GACNNNNNGTC	3 cut(s)	46, 496, 525
BmeT110I	CYCGRG	1 cut(s)	257
BmgT120I	GGNCC	1 cut(s)	653
BmiI	GGNNCC	1 cut(s)	428
BmrFI	CCNGG	2 cut(s)	64, 357
BmsI	GCATC	2 cut(s)	166, 815
BpiI	GAAGAC	1 cut(s)	45
Bpu10I	CCTNAGC	1 cut(s)	351
BpuEI	CTTGAG	1 cut(s)	270
BpuMI	CCSGG	1 cut(s)	357
BsaXI	ACNNNNNCTCC	6 cut(s)	205, 229, 235, 246, 259, 276
Bsc4I	CCNNNNNNNGG	2 cut(s)	356, 418
BseBI	CCWGG	1 cut(s)	64
BseLI	CCNNNNNNNGG	2 cut(s)	356, 418
BseMII	CTCAG	4 cut(s)	84, 342, 359, 499
BseRI	GAGGAG	3 cut(s)	237, 263, 266
BseXI	GCAGC	2 cut(s)	763, 766
BsgI	GTGCAG	1 cut(s)	441
Bsh1285I	CGRYCG	1 cut(s)	547
BshFI	GGCC	3 cut(s)	360, 655, 738
BsiEI	CGRYCG	1 cut(s)	547
BsiHKAI	GWGCWC	1 cut(s)	264
BsiHKCI	CYCGRG	1 cut(s)	257
BsiSI	CCGG	2 cut(s)	357, 540
BslI	CCNNNNNNNGG	2 cut(s)	356, 418
BsmAI	GTCTC	3 cut(s)	504, 510, 533
BsmBI	CGTCTC	2 cut(s)	510, 533
BsnI	GGCC	3 cut(s)	360, 655, 738
BsoBI	CYCGRG	1 cut(s)	257
Bsp1286I	GDGCHC	3 cut(s)	264, 357, 431
Bsp143I	GATC	6 cut(s)	308, 320, 364, 544, 682, 760
BspACI	CCGC	3 cut(s)	509, 532, 692
BspANI	GGCC	3 cut(s)	360, 655, 738
BspCNI	CTCAG	4 cut(s)	85, 343, 360, 498
BspLI	GGNNCC	1 cut(s)	428
BspPI	GGATC	2 cut(s)	303, 755
BssMI	GATC	6 cut(s)	308, 320, 364, 544, 682, 760
Bst2UI	CCWGG	1 cut(s)	64
Bst4CI	ACNGT	1 cut(s)	467
BstC8I	GCNNGC	1 cut(s)	798
BstDEI	CTNAG	5 cut(s)	93, 351, 368, 485, 642
BstEII	GGTNACC	1 cut(s)	664
BstH2I	RGCGCY	1 cut(s)	305
BstHHI	GCGC	1 cut(s)	304
BstKTI	GATC	6 cut(s)	311, 323, 367, 547, 685, 763
BstMAI	GTCTC	3 cut(s)	504, 510, 533
BstMBI	GATC	6 cut(s)	308, 320, 364, 544, 682, 760
BstMCI	CGRYCG	1 cut(s)	547
BstMWI	GCNNNNNNNGC	3 cut(s)	540, 788, 797
BstNI	CCWGG	1 cut(s)	64
BstNSI	RCATGY	1 cut(s)	800
BstPI	GGTNACC	1 cut(s)	664
BstSCI	CCNGG	2 cut(s)	62, 355
BstV1I	GCAGC	2 cut(s)	763, 766
BstV2I	GAAGAC	1 cut(s)	45
BstX2I	RGATCY	2 cut(s)	308, 760
BstYI	RGATCY	2 cut(s)	308, 760
BsuRI	GGCC	3 cut(s)	360, 655, 738
BtsIMutI	CAGTG	1 cut(s)	493
Cac8I	GCNNGC	1 cut(s)	798
CfoI	GCGC	1 cut(s)	304
Cfr13I	GGNCC	1 cut(s)	653
CseI	GACGC	1 cut(s)	637
Csp6I	GTAC	2 cut(s)	115, 551
CviAII	CATG	2 cut(s)	740, 797
CviQI	GTAC	2 cut(s)	115, 551
DdeI	CTNAG	5 cut(s)	93, 351, 368, 485, 642
DpnI	GATC	6 cut(s)	310, 322, 366, 546, 684, 762
DpnII	GATC	6 cut(s)	308, 320, 364, 544, 682, 760
DriI	GACNNNNNGTC	3 cut(s)	46, 496, 525
EaeI	YGGCCR	1 cut(s)	736
Eam1105I	GACNNNNNGTC	3 cut(s)	46, 496, 525
EciI	GGCGGA	2 cut(s)	498, 521
Ecl136II	GAGCTC	1 cut(s)	262
Eco24I	GRGCYC	3 cut(s)	264, 357, 431
Eco53kI	GAGCTC	1 cut(s)	262
Eco57I	CTGAAG	3 cut(s)	90, 126, 318
Eco88I	CYCGRG	1 cut(s)	257
Eco91I	GGTNACC	1 cut(s)	664
EcoICRI	GAGCTC	1 cut(s)	262
EcoO65I	GGTNACC	1 cut(s)	664
EcoRII	CCWGG	1 cut(s)	62
EcoT38I	GRGCYC	3 cut(s)	264, 357, 431
Esp3I	CGTCTC	2 cut(s)	510, 533
FaeI	CATG	2 cut(s)	743, 800
FaiI	YATR	8 cut(s)	140, 557, 593, 702, 714, 741, 798, 861
FalI	AAGNNNNNCTT	2 cut(s)	711, 743
FatI	CATG	2 cut(s)	739, 796
FauI	CCCGC	1 cut(s)	685
FblI	GTMKAC	1 cut(s)	626
Fnu4HI	GCNGC	2 cut(s)	777, 780
FriOI	GRGCYC	3 cut(s)	264, 357, 431
Fsp4HI	GCNGC	2 cut(s)	777, 780
FspBI	CTAG	2 cut(s)	752, 822
GlaI	GCGC	1 cut(s)	303
GluI	GCNGC	2 cut(s)	777, 780
HaeII	RGCGCY	1 cut(s)	305
HaeIII	GGCC	3 cut(s)	360, 655, 738
HapII	CCGG	2 cut(s)	357, 540
HgaI	GACGC	1 cut(s)	637
HhaI	GCGC	1 cut(s)	304
Hin1II	CATG	2 cut(s)	743, 800
Hin6I	GCGC	1 cut(s)	302
HinP1I	GCGC	1 cut(s)	302
HincII	GTYRAC	1 cut(s)	627
HindII	GTYRAC	1 cut(s)	627
HpaII	CCGG	2 cut(s)	357, 540
HphI	GGTGA	1 cut(s)	211
Hpy166II	GTNNAC	2 cut(s)	202, 627
Hpy188III	TCNNGA	3 cut(s)	126, 312, 350
Hpy8I	GTNNAC	2 cut(s)	202, 627
Hpy99I	CGWCG	1 cut(s)	631
HpyAV	CCTTC	1 cut(s)	839
HpyCH4III	ACNGT	1 cut(s)	467
HpyCH4V	TGCA	4 cut(s)	179, 458, 704, 796
HpyF10VI	GCNNNNNNNGC	3 cut(s)	540, 788, 797
HpyF3I	CTNAG	5 cut(s)	93, 351, 368, 485, 642
Hsp92II	CATG	2 cut(s)	743, 800
HspAI	GCGC	1 cut(s)	302
Kzo9I	GATC	6 cut(s)	308, 320, 364, 544, 682, 760
LmnI	GCTCC	2 cut(s)	267, 426
Lsp1109I	GCAGC	2 cut(s)	763, 766
LweI	GCATC	2 cut(s)	166, 815
MaeI	CTAG	2 cut(s)	752, 822
MaeIII	GTNAC	3 cut(s)	334, 488, 664
MalI	GATC	6 cut(s)	310, 322, 366, 546, 684, 762
MboI	GATC	6 cut(s)	308, 320, 364, 544, 682, 760
MboII	GAAGA	9 cut(s)	47, 50, 83, 86, 89, 173, 397, 659, 731
MfeI	CAATTG	1 cut(s)	180
MflI	RGATCY	2 cut(s)	308, 760
MhlI	GDGCHC	3 cut(s)	264, 357, 431
MlsI	TGGCCA	1 cut(s)	738
MluCI	AATT	5 cut(s)	154, 180, 327, 389, 670
MluNI	TGGCCA	1 cut(s)	738
MlyI	GAGTC	7 cut(s)	104, 208, 232, 485, 514, 652, 686
MmeI	TCCRAC	3 cut(s)	78, 404, 601
Mox20I	TGGCCA	1 cut(s)	738
MscI	TGGCCA	1 cut(s)	738
MseI	TTAA	2 cut(s)	392, 868
Msp20I	TGGCCA	1 cut(s)	738
MspI	CCGG	2 cut(s)	357, 540
MspR9I	CCNGG	2 cut(s)	64, 357
MunI	CAATTG	1 cut(s)	180
MvaI	CCWGG	1 cut(s)	64
MwoI	GCNNNNNNNGC	3 cut(s)	540, 788, 797
NciI	CCSGG	1 cut(s)	357
NdeII	GATC	6 cut(s)	308, 320, 364, 544, 682, 760
NlaIII	CATG	2 cut(s)	743, 800
NlaIV	GGNNCC	1 cut(s)	428
NmeAIII	GCCGAG	1 cut(s)	330
NmuCI	GTSAC	1 cut(s)	488
NspI	RCATGY	1 cut(s)	800
PaeI	GCATGC	1 cut(s)	800
PaeR7I	CTCGAG	1 cut(s)	257
PfeI	GAWTC	6 cut(s)	80, 89, 101, 346, 638, 844
PkrI	GCNGC	2 cut(s)	778, 781
Ple19I	CGATCG	1 cut(s)	547
PleI	GAGTC	7 cut(s)	103, 208, 232, 485, 514, 652, 685
PpsI	GAGTC	7 cut(s)	103, 208, 232, 485, 514, 652, 685
Psp124BI	GAGCTC	1 cut(s)	264
Psp6I	CCWGG	1 cut(s)	62
PspEI	GGTNACC	1 cut(s)	664
PspGI	CCWGG	1 cut(s)	62
PspN4I	GGNNCC	1 cut(s)	428
PspPI	GGNCC	1 cut(s)	653
PspXI	VCTCGAGB	1 cut(s)	257
PsuI	RGATCY	2 cut(s)	308, 760
PvuI	CGATCG	1 cut(s)	547
RsaI	GTAC	2 cut(s)	116, 552
RsaNI	GTAC	2 cut(s)	115, 551
SacI	GAGCTC	1 cut(s)	264
SalI	GTCGAC	1 cut(s)	625
SaqAI	TTAA	2 cut(s)	392, 868
SatI	GCNGC	2 cut(s)	777, 780
Sau3AI	GATC	6 cut(s)	308, 320, 364, 544, 682, 760
Sau96I	GGNCC	1 cut(s)	653
ScaI	AGTACT	1 cut(s)	116
SchI	GAGTC	7 cut(s)	104, 208, 232, 485, 514, 652, 686
ScrFI	CCNGG	2 cut(s)	64, 357
SduI	GDGCHC	3 cut(s)	264, 357, 431
SfaNI	GCATC	2 cut(s)	166, 815
Sfr274I	CTCGAG	1 cut(s)	257
SlaI	CTCGAG	1 cut(s)	257
SmlI	CTYRAG	2 cut(s)	257, 285
SmoI	CTYRAG	2 cut(s)	257, 285
SphI	GCATGC	1 cut(s)	800
Sse9I	AATT	5 cut(s)	154, 180, 327, 389, 670
SsiI	CCGC	3 cut(s)	509, 532, 692
SspMI	CTAG	2 cut(s)	752, 822
SstI	GAGCTC	1 cut(s)	264
StyD4I	CCNGG	2 cut(s)	62, 355
TaaI	ACNGT	1 cut(s)	467
TaqI	TCGA	7 cut(s)	217, 241, 258, 319, 363, 547, 626
TasI	AATT	5 cut(s)	154, 180, 327, 389, 670
TatI	WGTACW	1 cut(s)	114
TfiI	GAWTC	6 cut(s)	80, 89, 101, 346, 638, 844
Tru1I	TTAA	2 cut(s)	392, 868
Tru9I	TTAA	2 cut(s)	392, 868
TscAI	CASTG	1 cut(s)	493
TseFI	GTSAC	1 cut(s)	488
TseI	GCWGC	2 cut(s)	776, 779
Tsp45I	GTSAC	1 cut(s)	488
TspDTI	ATGAA	4 cut(s)	17, 48, 72, 149
TspGWI	ACGGA	3 cut(s)	484, 492, 515
TspRI	CASTG	1 cut(s)	493
XceI	RCATGY	1 cut(s)	800
XhoI	CTCGAG	1 cut(s)	257
XmiI	GTMKAC	1 cut(s)	626
XspI	CTAG	2 cut(s)	752, 822
ZrmI	AGTACT	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.