MD14G1023300.v1.1

Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
Physical Location & Seq
Forward (+)
2081330 .. 2085044
3715 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1023300.v1.1.491

Sequence Viewer

Length: 948 bp
ATGAAAGTTGGGACCTTCAATGCCGCTTTCTCTTCCGATGTCCGTACACTTCACAGACCTCCGAGCTCTTCAATTTTCGGCGCGGCAAACCGTAAAAGTTTCACTGCCAGACCTTCCATGGCGTCCAGTTTTACCCGGCGGCTTTCGATCCGCTGCGCCGTTCGCTTCCGGCCTTGCATTGACATACACATGGGGAAAGTGAAACAAATTGTTGGGTCTACCCTTTCTGATTTGAAGGATGATGGGTCGGTTCTTGTTACCAATTTTGTGTCGGATAAGTCTGCAGCGGAGTATGCAAAGATGTATAAAGAAGATGGGCTTACAGGTGGTCATGTTATCATGCTTGGAGCTGACCCTTTGAGTAGAGCTGCAGCCATTGAAGCTTTGCATGCCTATCCTGGTGGTTTGCAAGTAGGAGGTGGGATCAATTCAGAAAATTCTTTGAATTACATAGAAGAAGGGGCTAGCCATGTCATTGTCACTTCCTATGTATTTAACAATGGACAAATGGACCTTGAAAGGCTTAAAGATCTTGTTCTTGTTGTTGGAAAAGAAGGGCTTGTTTTAGACCTTAGCTGCAGAAAGAGGGATGGTAGATATGCAATCGTCACAGATAGATGGCAGAAGTTTAGTGATGTGAATCTTGATGAGGAAATATTGAACTTTCTTGCCAACTATGCAGACGAATTTCTGGTACATGGTGTTGATGTTGAAGGGAAAAAGCTGGGAATTGATGAGGAGCTTGTGGCATTGCTTGGAAAGTATTCACCGATTCCTGTAACTTATGCTGGTGGTGTGACTGTAATGGCTGATTTAGAGAGGATAAAAGTGGCGGGACTGGGACATGTAGATGTAACTGTTGGCAGCGCTTTGGATGTTTTTGGAGGCAACTTGTCATACAAAGACGTCGTTGCTTGGCATGCCCAGCAGGAGGCCTTGACTGTTTAG

Protein Analysis

316

Amino Acids

34.07

Weight (kDa)

5.92

Isoelectric Point (pI)

31.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
His_biosynth PF00977 58 - 291 6.9e-28 Histidine biosynthesis protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 909
AccI GTMKAC 1 cut(s) 218
AccII CGCG 1 cut(s) 83
AciI CCGC 6 cut(s) 24, 83, 139, 151, 287, 833
AclWI GGATC 2 cut(s) 142, 431
AcsI RAATTY 2 cut(s) 436, 686
AcyI GRCGYC 2 cut(s) 122, 906
AfaI GTAC 2 cut(s) 46, 696
AfeI AGCGCT 1 cut(s) 868
AfiI CCNNNNNNNGG 1 cut(s) 931
AflIII ACRYGT 1 cut(s) 844
AgsI TTSAA 8 cut(s) 19, 72, 235, 380, 445, 518, 661, 713
AjnI CCWGG 1 cut(s) 397
AluBI AGCT 7 cut(s) 66, 350, 368, 383, 576, 724, 742
AluI AGCT 7 cut(s) 66, 350, 368, 383, 576, 724, 742
Alw21I GWGCWC 1 cut(s) 68
AlwI GGATC 2 cut(s) 142, 431
Aor51HI AGCGCT 1 cut(s) 868
AoxI GGCC 2 cut(s) 170, 933
ApeKI GCWGC 6 cut(s) 153, 284, 368, 371, 576, 864
ApoI RAATTY 2 cut(s) 436, 686
Asp700I GAANNNNTTC 1 cut(s) 763
AspLEI GCGC 3 cut(s) 83, 158, 869
AspS9I GGNCC 2 cut(s) 12, 511
AsuC2I CCSGG 1 cut(s) 136
AsuHPI GGTGA 1 cut(s) 759
AsuNHI GCTAGC 1 cut(s) 464
AvaII GGWCC 2 cut(s) 12, 511
BanII GRGCYC 1 cut(s) 68
Bbv12I GWGCWC 1 cut(s) 68
BbvI GCAGC 6 cut(s) 140, 296, 355, 383, 563, 876
BccI CCATC 4 cut(s) 236, 308, 584, 612
BceAI ACGGC 1 cut(s) 143
BciT130I CCWGG 1 cut(s) 399
BcnI CCSGG 1 cut(s) 136
BfaI CTAG 1 cut(s) 465
BfmI CTRYAG 3 cut(s) 282, 369, 577
BfoI RGCGCY 1 cut(s) 870
BglII AGATCT 1 cut(s) 529
BisI GCNGC 9 cut(s) 24, 84, 140, 154, 285, 369, 372, 577, 865
BlsI GCNGC 9 cut(s) 25, 85, 141, 155, 286, 370, 373, 578, 866
Bme1390I CCNGG 2 cut(s) 136, 399
Bme18I GGWCC 2 cut(s) 12, 511
BmgT120I GGNCC 2 cut(s) 12, 511
BmiI GGNNCC 1 cut(s) 13
BmrFI CCNGG 2 cut(s) 136, 399
BmrI ACTGGG 1 cut(s) 848
BmtI GCTAGC 1 cut(s) 468
BmuI ACTGGG 1 cut(s) 848
Bpu10I CCTNAGC 1 cut(s) 572
BpuMI CCSGG 1 cut(s) 136
BsaBI GATNNNNATC 1 cut(s) 639
BsaHI GRCGYC 2 cut(s) 122, 906
BsaJI CCNNGG 1 cut(s) 117
Bsc4I CCNNNNNNNGG 1 cut(s) 931
Bse1I ACTGG 2 cut(s) 126, 843
Bse3DI GCAATG 1 cut(s) 749
Bse8I GATNNNNATC 1 cut(s) 639
BseBI CCWGG 1 cut(s) 399
BseDI CCNNGG 1 cut(s) 117
BseGI GGATG 3 cut(s) 244, 595, 880
BseJI GATNNNNATC 1 cut(s) 639
BseLI CCNNNNNNNGG 1 cut(s) 931
BseMI GCAATG 1 cut(s) 749
BseNI ACTGG 2 cut(s) 126, 843
BseRI GAGGAG 1 cut(s) 752
BseXI GCAGC 6 cut(s) 140, 296, 355, 383, 563, 876
BseYI CCCAGC 2 cut(s) 724, 924
Bsh1236I CGCG 1 cut(s) 83
BshFI GGCC 2 cut(s) 172, 935
BsiHKAI GWGCWC 1 cut(s) 68
BsiSI CCGG 2 cut(s) 136, 169
BslFI GGGAC 3 cut(s) 25, 849, 855
BslI CCNNNNNNNGG 1 cut(s) 931
BsmFI GGGAC 3 cut(s) 25, 849, 855
BsnI GGCC 2 cut(s) 172, 935
Bsp1286I GDGCHC 1 cut(s) 68
Bsp143I GATC 3 cut(s) 147, 423, 529
Bsp19I CCATGG 1 cut(s) 117
BspACI CCGC 6 cut(s) 24, 83, 139, 151, 287, 833
BspANI GGCC 2 cut(s) 172, 935
BspFNI CGCG 1 cut(s) 83
BspLI GGNNCC 1 cut(s) 13
BspMAI CTGCAG 3 cut(s) 286, 373, 581
BspOI GCTAGC 1 cut(s) 468
BspPI GGATC 2 cut(s) 142, 431
BspQI GCTCTTC 1 cut(s) 73
BsrDI GCAATG 1 cut(s) 749
BsrI ACTGG 2 cut(s) 126, 843
BssECI CCNNGG 1 cut(s) 117
BssMI GATC 3 cut(s) 147, 423, 529
BssNI GRCGYC 2 cut(s) 122, 906
BssT1I CCWWGG 1 cut(s) 117
Bst2UI CCWGG 1 cut(s) 399
Bst4CI ACNGT 4 cut(s) 92, 802, 859, 943
Bst6I CTCTTC 2 cut(s) 37, 73
BstACI GRCGYC 2 cut(s) 122, 906
BstC8I GCNNGC 3 cut(s) 390, 466, 921
BstDEI CTNAG 1 cut(s) 572
BstDSI CCRYGG 1 cut(s) 117
BstF5I GGATG 3 cut(s) 244, 595, 880
BstFNI CGCG 1 cut(s) 83
BstH2I RGCGCY 1 cut(s) 870
BstHHI GCGC 3 cut(s) 83, 158, 869
BstKTI GATC 3 cut(s) 150, 426, 532
BstMBI GATC 3 cut(s) 147, 423, 529
BstMWI GCNNNNNNNGC 7 cut(s) 162, 293, 380, 389, 677, 920, 925
BstNI CCWGG 1 cut(s) 399
BstNSI RCATGY 3 cut(s) 392, 848, 923
BstSCI CCNGG 2 cut(s) 134, 397
BstSFI CTRYAG 3 cut(s) 282, 369, 577
BstUI CGCG 1 cut(s) 83
BstV1I GCAGC 6 cut(s) 140, 296, 355, 383, 563, 876
BstX2I RGATCY 1 cut(s) 529
BstYI RGATCY 1 cut(s) 529
BsuRI GGCC 2 cut(s) 172, 935
BtgI CCRYGG 1 cut(s) 117
BtsCI GGATG 3 cut(s) 244, 595, 880
BtsI GCAGTG 1 cut(s) 102
BtsIMutI CAGTG 1 cut(s) 102
Cac8I GCNNGC 3 cut(s) 390, 466, 921
CfoI GCGC 3 cut(s) 83, 158, 869
Cfr13I GGNCC 2 cut(s) 12, 511
CseI GACGC 1 cut(s) 111
Csp6I GTAC 2 cut(s) 45, 695
CviAII CATG 9 cut(s) 118, 190, 332, 340, 389, 470, 698, 845, 920
CviQI GTAC 2 cut(s) 45, 695
DdeI CTNAG 1 cut(s) 572
DpnI GATC 3 cut(s) 149, 425, 531
DpnII GATC 3 cut(s) 147, 423, 529
Eam1104I CTCTTC 2 cut(s) 37, 73
EarI CTCTTC 2 cut(s) 37, 73
Ecl136II GAGCTC 1 cut(s) 66
Eco130I CCWWGG 1 cut(s) 117
Eco147I AGGCCT 1 cut(s) 935
Eco24I GRGCYC 1 cut(s) 68
Eco47I GGWCC 2 cut(s) 12, 511
Eco47III AGCGCT 1 cut(s) 868
Eco53kI GAGCTC 1 cut(s) 66
EcoICRI GAGCTC 1 cut(s) 66
EcoO109I RGGNCCY 1 cut(s) 12
EcoRII CCWGG 1 cut(s) 397
EcoT14I CCWWGG 1 cut(s) 117
EcoT38I GRGCYC 1 cut(s) 68
ErhI CCWWGG 1 cut(s) 117
FaeI CATG 9 cut(s) 121, 193, 335, 343, 392, 473, 701, 848, 923
FalI AAGNNNNNCTT 4 cut(s) 303, 335, 543, 575
FaqI GGGAC 3 cut(s) 25, 849, 855
FatI CATG 9 cut(s) 117, 189, 331, 339, 388, 469, 697, 844, 919
FauI CCCGC 1 cut(s) 826
FblI GTMKAC 1 cut(s) 218
Fnu4HI GCNGC 9 cut(s) 24, 84, 140, 154, 285, 369, 372, 577, 865
FokI GGATG 3 cut(s) 251, 602, 887
FriOI GRGCYC 1 cut(s) 68
Fsp4HI GCNGC 9 cut(s) 24, 84, 140, 154, 285, 369, 372, 577, 865
FspBI CTAG 1 cut(s) 465
GlaI GCGC 3 cut(s) 82, 157, 868
GluI GCNGC 9 cut(s) 24, 84, 140, 154, 285, 369, 372, 577, 865
GsaI CCCAGC 2 cut(s) 728, 928
HaeII RGCGCY 1 cut(s) 870
HaeIII GGCC 2 cut(s) 172, 935
HapII CCGG 2 cut(s) 136, 169
HgaI GACGC 1 cut(s) 111
HhaI GCGC 3 cut(s) 83, 158, 869
Hin1I GRCGYC 2 cut(s) 122, 906
Hin1II CATG 9 cut(s) 121, 193, 335, 343, 392, 473, 701, 848, 923
Hin6I GCGC 3 cut(s) 81, 156, 867
HinP1I GCGC 3 cut(s) 81, 156, 867
HindIII AAGCTT 1 cut(s) 381
HinfI GANTC 2 cut(s) 640, 772
HpaII CCGG 2 cut(s) 136, 169
HphI GGTGA 1 cut(s) 759
Hpy166II GTNNAC 2 cut(s) 47, 219
Hpy188I TCNGA 5 cut(s) 37, 63, 229, 274, 433
Hpy188III TCNNGA 1 cut(s) 644
Hpy8I GTNNAC 2 cut(s) 47, 219
Hpy99I CGWCG 1 cut(s) 911
HpyAV CCTTC 6 cut(s) 25, 123, 229, 452, 548, 707
HpyCH4III ACNGT 4 cut(s) 92, 802, 859, 943
HpyCH4IV ACGT 1 cut(s) 906
HpyCH4V TGCA 9 cut(s) 177, 284, 296, 371, 388, 409, 579, 602, 680
HpyF10VI GCNNNNNNNGC 7 cut(s) 162, 293, 380, 389, 677, 920, 925
HpyF3I CTNAG 1 cut(s) 572
HpySE526I ACGT 1 cut(s) 906
Hsp92I GRCGYC 2 cut(s) 122, 906
Hsp92II CATG 9 cut(s) 121, 193, 335, 343, 392, 473, 701, 848, 923
HspAI GCGC 3 cut(s) 81, 156, 867
Kzo9I GATC 3 cut(s) 147, 423, 529
LguI GCTCTTC 1 cut(s) 73
LmnI GCTCC 2 cut(s) 347, 739
Lsp1109I GCAGC 6 cut(s) 140, 296, 355, 383, 563, 876
MaeI CTAG 1 cut(s) 465
MaeII ACGT 1 cut(s) 906
MaeIII GTNAC 6 cut(s) 256, 478, 607, 778, 796, 853
MalI GATC 3 cut(s) 149, 425, 531
MboI GATC 3 cut(s) 147, 423, 529
MboII GAAGA 4 cut(s) 24, 60, 323, 467
MflI RGATCY 1 cut(s) 529
MhlI GDGCHC 1 cut(s) 68
MluCI AATT 8 cut(s) 72, 207, 262, 427, 436, 445, 686, 729
MmeI TCCRAC 2 cut(s) 252, 526
MnlI CCTC 8 cut(s) 69, 410, 579, 643, 730, 813, 878, 925
MroXI GAANNNNTTC 1 cut(s) 763
MseI TTAA 2 cut(s) 495, 525
MslI CAYNNNNRTG 2 cut(s) 188, 849
MspA1I CMGCKG 2 cut(s) 153, 287
MspI CCGG 2 cut(s) 136, 169
MspR9I CCNGG 2 cut(s) 136, 399
MvaI CCWGG 1 cut(s) 399
MvnI CGCG 1 cut(s) 83
MwoI GCNNNNNNNGC 7 cut(s) 162, 293, 380, 389, 677, 920, 925
NciI CCSGG 1 cut(s) 136
NcoI CCATGG 1 cut(s) 117
NdeII GATC 3 cut(s) 147, 423, 529
NheI GCTAGC 1 cut(s) 464
NlaIII CATG 9 cut(s) 121, 193, 335, 343, 392, 473, 701, 848, 923
NlaIV GGNNCC 1 cut(s) 13
NmuCI GTSAC 3 cut(s) 478, 607, 796
NspI RCATGY 3 cut(s) 392, 848, 923
PaeI GCATGC 2 cut(s) 392, 923
PceI AGGCCT 1 cut(s) 935
PciI ACATGT 1 cut(s) 844
PciSI GCTCTTC 1 cut(s) 73
PdmI GAANNNNTTC 1 cut(s) 763
PfeI GAWTC 2 cut(s) 640, 772
PkrI GCNGC 9 cut(s) 25, 85, 141, 155, 286, 370, 373, 578, 866
PpuMI RGGWCCY 1 cut(s) 12
PscI ACATGT 1 cut(s) 844
Psp124BI GAGCTC 1 cut(s) 68
Psp5II RGGWCCY 1 cut(s) 12
Psp6I CCWGG 1 cut(s) 397
PspFI CCCAGC 2 cut(s) 724, 924
PspGI CCWGG 1 cut(s) 397
PspN4I GGNNCC 1 cut(s) 13
PspPI GGNCC 2 cut(s) 12, 511
PspPPI RGGWCCY 1 cut(s) 12
PstI CTGCAG 3 cut(s) 286, 373, 581
PsuI RGATCY 1 cut(s) 529
RsaI GTAC 2 cut(s) 46, 696
RsaNI GTAC 2 cut(s) 45, 695
RseI CAYNNNNRTG 2 cut(s) 188, 849
SacI GAGCTC 1 cut(s) 68
SapI GCTCTTC 1 cut(s) 73
SaqAI TTAA 2 cut(s) 495, 525
SatI GCNGC 9 cut(s) 24, 84, 140, 154, 285, 369, 372, 577, 865
Sau3AI GATC 3 cut(s) 147, 423, 529
Sau96I GGNCC 2 cut(s) 12, 511
ScrFI CCNGG 2 cut(s) 136, 399
SduI GDGCHC 1 cut(s) 68
SfcI CTRYAG 3 cut(s) 282, 369, 577
SinI GGWCC 2 cut(s) 12, 511
SmiMI CAYNNNNRTG 2 cut(s) 188, 849
SphI GCATGC 2 cut(s) 392, 923
Sse9I AATT 8 cut(s) 72, 207, 262, 427, 436, 445, 686, 729
SseBI AGGCCT 1 cut(s) 935
SsiI CCGC 6 cut(s) 24, 83, 139, 151, 287, 833
SspI AATATT 1 cut(s) 657
SspMI CTAG 1 cut(s) 465
SstI GAGCTC 1 cut(s) 68
StuI AGGCCT 1 cut(s) 935
StyD4I CCNGG 2 cut(s) 134, 397
StyI CCWWGG 1 cut(s) 117
TaaI ACNGT 4 cut(s) 92, 802, 859, 943
TaiI ACGT 1 cut(s) 909
TaqI TCGA 1 cut(s) 146
TasI AATT 8 cut(s) 72, 207, 262, 427, 436, 445, 686, 729
TauI GCSGC 3 cut(s) 26, 86, 142
TfiI GAWTC 2 cut(s) 640, 772
Tru1I TTAA 2 cut(s) 495, 525
Tru9I TTAA 2 cut(s) 495, 525
TscAI CASTG 1 cut(s) 109
TseFI GTSAC 3 cut(s) 478, 607, 796
TseI GCWGC 6 cut(s) 153, 284, 368, 371, 576, 864
Tsp45I GTSAC 3 cut(s) 478, 607, 796
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 32
TspRI CASTG 1 cut(s) 109
VpaK11BI GGWCC 2 cut(s) 12, 511
XapI RAATTY 2 cut(s) 436, 686
XceI RCATGY 3 cut(s) 392, 848, 923
XcmI CCANNNNNNNNNTGG 1 cut(s) 115
XmiI GTMKAC 1 cut(s) 218
XmnI GAANNNNTTC 1 cut(s) 763
XspI CTAG 1 cut(s) 465
ZraI GACGTC 1 cut(s) 907
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.