Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0000857

Physical Location & Seq

Genomic Coordinates Forward (+)

19943158 .. 19946082

Gene Structure 2925 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG202300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGTATCCTGATAATCTGAATATGTTGGTCTGGCCGGCCCAGATTGGAGCTACTTTCCCTCTCAACTCAAACCCTAGCCCCTCCTCCTCTTGTCTCACAGCTCGCCTGAGGCTACTGAATGCGATCATGGCCGACGTCGCCACCCTGTCGTGTGCTCGTTGCAGCAAATCCGCCAATCTTCAGTGTCCCAAGTATGTGGAATTGAAGCTTCCTCATGAAGATGCCGCTTTCTGGGCTGTTTGGATATCTCTGGGAGGTAGGCTTGGGTTTGCTTTGGAAGAGGTGTGTGTCGAGATTGTGATCAAGTTTAGTCTCGGTAAAAAGAAGTTTGATGGGTCTAGGCCATCTGCAACGTTCAGTAAGTTTCTGCTTCTGTTTTTGGGGAAAGTGAAACAGATTGTTGGGTCGACGCTTTCGGATTCTAAGGAAGATGGGCTGGCTCTGGTTACCAATTTTGTGTCAGATAAGTCGGCGGGGGAGTATGCAAAGATGTATAAGGAAGATGGGCTTACAGGTGGCCATGTGATAATGCTGGGGGCAGATCCTTTGAGTAGAGCTGCTGCCATTGAAGCTCTGCATGCCTATTCTGGTGGTTTGCAAGTGGGAGGTGGGATCAATTCTAATAATTCTTTGCAATACATAGAAGAAGGGGCTAGCCATGTCATTGTCACTTTTTATGTATTTAATAATGGGCAAATGGATCTTGAAAGGCTTAAAGATCTTGTTCATGTTGTTGGAAAAGAGAGGCTTGTTTTAGACCTTAGCTGTAGAAAGAGGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0000162 GO:0003674 GO:0003824 GO:0003949 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

His_biosynth

Protein Analysis

260

Amino Acids

28.2

Weight (kDa)

8.16

Isoelectric Point (pI)

39.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
His_biosynth	PF00977	155 - 258	6.2e-07	Histidine biosynthesis protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000857)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36230
fragaria_vesca	FvH4_6g18790 FvH4_6g18790 FvH4_6g18790 FvH4_6g18790 FvH4_6g18790 FvH4_6g18790
malus_domestica	MD12G1036500.v1.1 MD14G1023300.v1.1
prunus_persica	Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1
pyrus_communis	pycom12g02400 pycom14g02220 pycom14g02230
rosa_chinensis	RchiOBHm_Chr1g0324901 RchiOBHm_Chr1g0350151 RchiOBHm_Chr3g0473801 RchiOBHm_Chr4g0393091 RchiOBHm_Chr4g0409701 RchiOBHm_Chr5g0027171
rosa_laevigata	RLG00000014193 RLG00000023983 RLG00000035737
rosa_multiflora	Rmu_sc0001207.1_g000028 Rmu_sc0002986.1_g000013 Rmu_sc0007035.1_g000005 Rmu_sc0016122.1_g000001 Rmu_sc0037919.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029230 Rroxscaffold_1G00029310 Rroxscaffold_2G00114250 Rroxscaffold_3G00260930 Rroxscaffold_3G00260940 Rroxscaffold_4G00311820 Rroxscaffold_4G00332560 Rroxscaffold_5G00338520 Rroxscaffold_5G00355640 Rroxscaffold_6G00407790
rosa_rugosa	Rorug01G0107500 Rorug02G0045900 Rorug03G0135600 Rorug06G0225600 Rorug07G0319400 Rorug07G0330900
rosa_samantha	Rh1AG080400 Rh1AG119900 Rh1AG120000 Rh1AG233100 Rh1CG115000 Rh1CG217700 Rh2BG241500 Rh2BG353000 Rh2DG556200 Rh3AG186100 Rh3AG202300 Rh3BG214400 Rh3CG211200 Rh3DG210400 Rh3DG227900 Rh5AG343700 Rh5DG191000
rosa_wichuraiana	Rw1G018100 Rw3G017000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	138
AccI	GTMKAC	1 cut(s)	407
AciI	CCGC	3 cut(s)	171, 225, 473
AclI	AACGTT	1 cut(s)	353
AclWI	GGATC	3 cut(s)	536, 620, 708
AcoI	YGGCCR	3 cut(s)	32, 129, 517
AcuI	CTGAAG	1 cut(s)	164
AcyI	GRCGYC	1 cut(s)	135
AfiI	CCNNNNNNNGG	1 cut(s)	231
AgsI	TTSAA	3 cut(s)	205, 569, 707
AluBI	AGCT	6 cut(s)	50, 101, 208, 557, 572, 765
AluI	AGCT	6 cut(s)	50, 101, 208, 557, 572, 765
Alw21I	GWGCWC	1 cut(s)	157
Alw26I	GTCTC	2 cut(s)	98, 317
AlwI	GGATC	3 cut(s)	536, 620, 708
AoxI	GGCC	5 cut(s)	32, 36, 129, 341, 517
ApeKI	GCWGC	3 cut(s)	162, 557, 560
AspS9I	GGNCC	1 cut(s)	37
AsuNHI	GCTAGC	1 cut(s)	653
AxyI	CCTNAGG	1 cut(s)	107
BalI	TGGCCA	1 cut(s)	519
Bbv12I	GWGCWC	1 cut(s)	157
BbvI	GCAGC	3 cut(s)	174, 544, 547
BccI	CCATC	4 cut(s)	326, 352, 425, 497
BciVI	GTATCC	1 cut(s)	15
BclI	TGATCA	1 cut(s)	300
BcoDI	GTCTC	2 cut(s)	98, 317
BfaI	CTAG	3 cut(s)	75, 339, 654
BfmI	CTRYAG	1 cut(s)	766
BfuI	GTATCC	1 cut(s)	15
BglII	AGATCT	1 cut(s)	718
BisI	GCNGC	4 cut(s)	163, 225, 558, 561
BlsI	GCNGC	4 cut(s)	164, 226, 559, 562
BmgT120I	GGNCC	1 cut(s)	37
BmsI	GCATC	1 cut(s)	211
BmtI	GCTAGC	1 cut(s)	657
Bpu10I	CCTNAGC	1 cut(s)	761
BsaBI	GATNNNNATC	1 cut(s)	299
BsaHI	GRCGYC	1 cut(s)	135
Bsc4I	CCNNNNNNNGG	1 cut(s)	231
Bse118I	RCCGGY	1 cut(s)	34
Bse21I	CCTNAGG	1 cut(s)	107
Bse8I	GATNNNNATC	1 cut(s)	299
BseJI	GATNNNNATC	1 cut(s)	299
BseLI	CCNNNNNNNGG	1 cut(s)	231
BseMII	CTCAG	1 cut(s)	98
BseRI	GAGGAG	2 cut(s)	73, 76
BseXI	GCAGC	3 cut(s)	174, 544, 547
BseYI	CCCAGC	1 cut(s)	532
BshFI	GGCC	5 cut(s)	34, 38, 131, 343, 519
BsiHKAI	GWGCWC	1 cut(s)	157
BsiSI	CCGG	1 cut(s)	35
BslFI	GGGAC	1 cut(s)	171
BslI	CCNNNNNNNGG	1 cut(s)	231
BsmAI	GTCTC	2 cut(s)	98, 317
BsmFI	GGGAC	1 cut(s)	171
BsmI	GAATGC	1 cut(s)	124
BsnI	GGCC	5 cut(s)	34, 38, 131, 343, 519
Bsp1286I	GDGCHC	1 cut(s)	157
Bsp143I	GATC	6 cut(s)	123, 300, 541, 612, 700, 718
BspACI	CCGC	3 cut(s)	171, 225, 473
BspANI	GGCC	5 cut(s)	34, 38, 131, 343, 519
BspCNI	CTCAG	1 cut(s)	99
BspHI	TCATGA	1 cut(s)	214
BspOI	GCTAGC	1 cut(s)	657
BspPI	GGATC	3 cut(s)	536, 620, 708
BsrFI	RCCGGY	1 cut(s)	34
BssAI	RCCGGY	1 cut(s)	34
BssMI	GATC	6 cut(s)	123, 300, 541, 612, 700, 718
BssNI	GRCGYC	1 cut(s)	135
Bst6I	CTCTTC	1 cut(s)	273
BstACI	GRCGYC	1 cut(s)	135
BstC8I	GCNNGC	5 cut(s)	36, 103, 438, 579, 655
BstDEI	CTNAG	3 cut(s)	107, 423, 761
BstEII	GGTNACC	1 cut(s)	445
BstKTI	GATC	6 cut(s)	126, 303, 544, 615, 703, 721
BstMAI	GTCTC	2 cut(s)	98, 317
BstMBI	GATC	6 cut(s)	123, 300, 541, 612, 700, 718
BstMWI	GCNNNNNNNGC	5 cut(s)	128, 137, 233, 569, 578
BstNSI	RCATGY	1 cut(s)	581
BstPI	GGTNACC	1 cut(s)	445
BstSFI	CTRYAG	1 cut(s)	766
BstV1I	GCAGC	3 cut(s)	174, 544, 547
BstX2I	RGATCY	3 cut(s)	541, 700, 718
BstXI	CCANNNNNNTGG	1 cut(s)	196
BstYI	RGATCY	3 cut(s)	541, 700, 718
Bsu36I	CCTNAGG	1 cut(s)	107
BsuI	GTATCC	1 cut(s)	15
BsuRI	GGCC	5 cut(s)	34, 38, 131, 343, 519
BtsIMutI	CAGTG	1 cut(s)	188
Cac8I	GCNNGC	5 cut(s)	36, 103, 438, 579, 655
CciI	TCATGA	1 cut(s)	214
Cfr10I	RCCGGY	1 cut(s)	34
Cfr13I	GGNCC	1 cut(s)	37
CseI	GACGC	1 cut(s)	418
CviAII	CATG	6 cut(s)	127, 215, 521, 578, 659, 728
DdeI	CTNAG	3 cut(s)	107, 423, 761
DpnI	GATC	6 cut(s)	125, 302, 543, 614, 702, 720
DpnII	GATC	6 cut(s)	123, 300, 541, 612, 700, 718
EaeI	YGGCCR	3 cut(s)	32, 129, 517
Eam1104I	CTCTTC	1 cut(s)	273
EarI	CTCTTC	1 cut(s)	273
EciI	GGCGGA	1 cut(s)	160
Eco32I	GATATC	1 cut(s)	246
Eco57I	CTGAAG	1 cut(s)	164
Eco81I	CCTNAGG	1 cut(s)	107
Eco91I	GGTNACC	1 cut(s)	445
EcoO65I	GGTNACC	1 cut(s)	445
EcoRV	GATATC	1 cut(s)	246
FaeI	CATG	6 cut(s)	130, 218, 524, 581, 662, 731
FalI	AAGNNNNNCTT	4 cut(s)	492, 524, 732, 764
FaqI	GGGAC	1 cut(s)	171
FatI	CATG	6 cut(s)	126, 214, 520, 577, 658, 727
FauI	CCCGC	1 cut(s)	466
FbaI	TGATCA	1 cut(s)	300
FblI	GTMKAC	1 cut(s)	407
Fnu4HI	GCNGC	4 cut(s)	163, 225, 558, 561
FseI	GGCCGGCC	1 cut(s)	38
Fsp4HI	GCNGC	4 cut(s)	163, 225, 558, 561
FspBI	CTAG	3 cut(s)	75, 339, 654
GluI	GCNGC	4 cut(s)	163, 225, 558, 561
GsaI	CCCAGC	1 cut(s)	536
HaeIII	GGCC	5 cut(s)	34, 38, 131, 343, 519
HapII	CCGG	1 cut(s)	35
HgaI	GACGC	1 cut(s)	418
Hin1I	GRCGYC	1 cut(s)	135
Hin1II	CATG	6 cut(s)	130, 218, 524, 581, 662, 731
HincII	GTYRAC	1 cut(s)	408
HindII	GTYRAC	1 cut(s)	408
HindIII	AAGCTT	1 cut(s)	206
HinfI	GANTC	1 cut(s)	419
HpaII	CCGG	1 cut(s)	35
Hpy166II	GTNNAC	1 cut(s)	408
Hpy188I	TCNGA	3 cut(s)	18, 418, 463
Hpy188III	TCNNGA	4 cut(s)	8, 215, 292, 704
Hpy8I	GTNNAC	1 cut(s)	408
Hpy99I	CGWCG	3 cut(s)	137, 140, 412
HpyAV	CCTTC	1 cut(s)	641
HpyCH4IV	ACGT	2 cut(s)	135, 353
HpyCH4V	TGCA	6 cut(s)	162, 350, 485, 577, 598, 634
HpyF10VI	GCNNNNNNNGC	5 cut(s)	128, 137, 233, 569, 578
HpyF3I	CTNAG	3 cut(s)	107, 423, 761
HpySE526I	ACGT	2 cut(s)	135, 353
Hsp92I	GRCGYC	1 cut(s)	135
Hsp92II	CATG	6 cut(s)	130, 218, 524, 581, 662, 731
KroI	GCCGGC	1 cut(s)	34
KroNI	GCCGGC	1 cut(s)	36
Ksp22I	TGATCA	1 cut(s)	300
Kzo9I	GATC	6 cut(s)	123, 300, 541, 612, 700, 718
LmnI	GCTCC	1 cut(s)	47
Lsp1109I	GCAGC	3 cut(s)	174, 544, 547
LweI	GCATC	1 cut(s)	211
MaeI	CTAG	3 cut(s)	75, 339, 654
MaeII	ACGT	2 cut(s)	135, 353
MaeIII	GTNAC	2 cut(s)	445, 667
MalI	GATC	6 cut(s)	125, 302, 543, 614, 702, 720
MboI	GATC	6 cut(s)	123, 300, 541, 612, 700, 718
MboII	GAAGA	6 cut(s)	170, 230, 290, 440, 512, 656
MflI	RGATCY	3 cut(s)	541, 700, 718
MhlI	GDGCHC	1 cut(s)	157
MlsI	TGGCCA	1 cut(s)	519
MluCI	AATT	4 cut(s)	200, 451, 616, 625
MluNI	TGGCCA	1 cut(s)	519
MmeI	TCCRAC	1 cut(s)	715
Mox20I	TGGCCA	1 cut(s)	519
MroNI	GCCGGC	1 cut(s)	34
MscI	TGGCCA	1 cut(s)	519
MseI	TTAA	2 cut(s)	684, 714
MslI	CAYNNNNRTG	1 cut(s)	219
Msp20I	TGGCCA	1 cut(s)	519
MspI	CCGG	1 cut(s)	35
Mva1269I	GAATGC	1 cut(s)	124
MwoI	GCNNNNNNNGC	5 cut(s)	128, 137, 233, 569, 578
NaeI	GCCGGC	1 cut(s)	36
NdeII	GATC	6 cut(s)	123, 300, 541, 612, 700, 718
NgoMIV	GCCGGC	1 cut(s)	34
NheI	GCTAGC	1 cut(s)	653
NlaIII	CATG	6 cut(s)	130, 218, 524, 581, 662, 731
NmuCI	GTSAC	1 cut(s)	667
NspI	RCATGY	1 cut(s)	581
PaeI	GCATGC	1 cut(s)	581
PagI	TCATGA	1 cut(s)	214
PctI	GAATGC	1 cut(s)	124
PdiI	GCCGGC	1 cut(s)	36
PfeI	GAWTC	1 cut(s)	419
PkrI	GCNGC	4 cut(s)	164, 226, 559, 562
Psp1406I	AACGTT	1 cut(s)	353
PspEI	GGTNACC	1 cut(s)	445
PspFI	CCCAGC	1 cut(s)	532
PspPI	GGNCC	1 cut(s)	37
PsuI	RGATCY	3 cut(s)	541, 700, 718
RigI	GGCCGGCC	1 cut(s)	38
RseI	CAYNNNNRTG	1 cut(s)	219
SalI	GTCGAC	1 cut(s)	406
SaqAI	TTAA	2 cut(s)	684, 714
SatI	GCNGC	4 cut(s)	163, 225, 558, 561
Sau3AI	GATC	6 cut(s)	123, 300, 541, 612, 700, 718
Sau96I	GGNCC	1 cut(s)	37
SduI	GDGCHC	1 cut(s)	157
SfaNI	GCATC	1 cut(s)	211
SfcI	CTRYAG	1 cut(s)	766
SmiMI	CAYNNNNRTG	1 cut(s)	219
SphI	GCATGC	1 cut(s)	581
Sse9I	AATT	4 cut(s)	200, 451, 616, 625
SsiI	CCGC	3 cut(s)	171, 225, 473
SspMI	CTAG	3 cut(s)	75, 339, 654
TaiI	ACGT	2 cut(s)	138, 356
TaqI	TCGA	2 cut(s)	291, 407
TasI	AATT	4 cut(s)	200, 451, 616, 625
TauI	GCSGC	1 cut(s)	227
TfiI	GAWTC	1 cut(s)	419
Tru1I	TTAA	2 cut(s)	684, 714
Tru9I	TTAA	2 cut(s)	684, 714
TscAI	CASTG	1 cut(s)	188
TseFI	GTSAC	1 cut(s)	667
TseI	GCWGC	3 cut(s)	162, 557, 560
Tsp45I	GTSAC	1 cut(s)	667
TspDTI	ATGAA	2 cut(s)	231, 716
TspRI	CASTG	1 cut(s)	188
XceI	RCATGY	1 cut(s)	581
XmiI	GTMKAC	1 cut(s)	407
XspI	CTAG	3 cut(s)	75, 339, 654
ZraI	GACGTC	1 cut(s)	136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.