Rroxscaffold_5G00338520

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000857
Physical Location & Seq
Reverse (-)
6700423 .. 6701337
915 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00338520.1

Sequence Viewer

Length: 204 bp
ATGTTGGTACGGCGGCCCGGTTGGAGCTACTTTCCCTCTCAACCGATTTCCCTCTCAACTCAAACCCTAGCCCCTCCTCCTCTTGTCTCACGGCTCGCCGAGGCTACGAATGCGATCATGGCCGACGTCACCACCCTGTCGTGTGCTCGTTGCAGCAAACCCGCCAATCTTCGGACAACGAGTTCAATTGATTACATTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

67

Amino Acids

7.27

Weight (kDa)

9.38

Isoelectric Point (pI)

53.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 129
AciI CCGC 2 cut(s) 13, 162
AcoI YGGCCR 1 cut(s) 120
AcyI GRCGYC 1 cut(s) 126
AfaI GTAC 1 cut(s) 9
AfiI CCNNNNNNNGG 1 cut(s) 171
AgsI TTSAA 1 cut(s) 186
AloI GAACNNNNNNTCC 2 cut(s) 166, 198
AluBI AGCT 1 cut(s) 27
AluI AGCT 1 cut(s) 27
Alw21I GWGCWC 1 cut(s) 148
Alw26I GTCTC 1 cut(s) 91
AoxI GGCC 2 cut(s) 14, 120
ApeKI GCWGC 1 cut(s) 153
AspS9I GGNCC 1 cut(s) 15
AsuC2I CCSGG 1 cut(s) 18
AsuHPI GGTGA 1 cut(s) 121
Bbv12I GWGCWC 1 cut(s) 148
BbvI GCAGC 1 cut(s) 165
BceAI ACGGC 2 cut(s) 26, 107
BcnI CCSGG 1 cut(s) 18
BcoDI GTCTC 1 cut(s) 91
BfaI CTAG 1 cut(s) 68
BisI GCNGC 2 cut(s) 14, 154
BlsI GCNGC 2 cut(s) 15, 155
Bme1390I CCNGG 1 cut(s) 18
BmgT120I GGNCC 1 cut(s) 15
BmrFI CCNGG 1 cut(s) 18
BpuMI CCSGG 1 cut(s) 18
BsaHI GRCGYC 1 cut(s) 126
BsaJI CCNNGG 1 cut(s) 99
Bsc4I CCNNNNNNNGG 1 cut(s) 171
BseDI CCNNGG 1 cut(s) 99
BseLI CCNNNNNNNGG 1 cut(s) 171
BseRI GAGGAG 2 cut(s) 66, 69
BseXI GCAGC 1 cut(s) 165
BshFI GGCC 2 cut(s) 16, 122
BsiHKAI GWGCWC 1 cut(s) 148
BsiSI CCGG 1 cut(s) 18
BslI CCNNNNNNNGG 1 cut(s) 171
BsmAI GTCTC 1 cut(s) 91
BsmI GAATGC 1 cut(s) 115
BsnI GGCC 2 cut(s) 16, 122
Bsp1286I GDGCHC 1 cut(s) 148
Bsp143I GATC 1 cut(s) 114
BspACI CCGC 2 cut(s) 13, 162
BspANI GGCC 2 cut(s) 16, 122
BssECI CCNNGG 1 cut(s) 99
BssMI GATC 1 cut(s) 114
BssNI GRCGYC 1 cut(s) 126
BstACI GRCGYC 1 cut(s) 126
BstC8I GCNNGC 1 cut(s) 96
BstKTI GATC 1 cut(s) 117
BstMAI GTCTC 1 cut(s) 91
BstMBI GATC 1 cut(s) 114
BstMWI GCNNNNNNNGC 2 cut(s) 110, 119
BstSCI CCNGG 1 cut(s) 16
BstV1I GCAGC 1 cut(s) 165
BsuRI GGCC 2 cut(s) 16, 122
Cac8I GCNNGC 1 cut(s) 96
Cfr13I GGNCC 1 cut(s) 15
Csp6I GTAC 1 cut(s) 8
CviAII CATG 1 cut(s) 118
CviJI RGCY 6 cut(s) 16, 27, 71, 94, 104, 122
CviKI_1 RGCY 6 cut(s) 16, 27, 71, 94, 104, 122
CviQI GTAC 1 cut(s) 8
DpnI GATC 1 cut(s) 116
DpnII GATC 1 cut(s) 114
EaeI YGGCCR 1 cut(s) 120
FaeI CATG 1 cut(s) 121
FaiI YATR 1 cut(s) 119
FatI CATG 1 cut(s) 117
FauI CCCGC 1 cut(s) 169
Fnu4HI GCNGC 2 cut(s) 14, 154
Fsp4HI GCNGC 2 cut(s) 14, 154
FspBI CTAG 1 cut(s) 68
GluI GCNGC 2 cut(s) 14, 154
HaeIII GGCC 2 cut(s) 16, 122
HapII CCGG 1 cut(s) 18
Hin1I GRCGYC 1 cut(s) 126
Hin1II CATG 1 cut(s) 121
HpaII CCGG 1 cut(s) 18
HphI GGTGA 1 cut(s) 121
Hpy188I TCNGA 1 cut(s) 174
Hpy99I CGWCG 1 cut(s) 128
HpyCH4IV ACGT 1 cut(s) 126
HpyCH4V TGCA 1 cut(s) 153
HpyF10VI GCNNNNNNNGC 2 cut(s) 110, 119
HpySE526I ACGT 1 cut(s) 126
Hsp92I GRCGYC 1 cut(s) 126
Hsp92II CATG 1 cut(s) 121
Kzo9I GATC 1 cut(s) 114
LmnI GCTCC 1 cut(s) 24
LpnPI CCDG 2 cut(s) 31, 149
Lsp1109I GCAGC 1 cut(s) 165
MaeI CTAG 1 cut(s) 68
MaeII ACGT 1 cut(s) 126
MaeIII GTNAC 1 cut(s) 127
MalI GATC 1 cut(s) 116
MboI GATC 1 cut(s) 114
MboII GAAGA 1 cut(s) 161
MfeI CAATTG 1 cut(s) 186
MhlI GDGCHC 1 cut(s) 148
MluCI AATT 1 cut(s) 186
MnlI CCTC 6 cut(s) 46, 62, 84, 87, 90, 94
MspI CCGG 1 cut(s) 18
MspR9I CCNGG 1 cut(s) 18
MunI CAATTG 1 cut(s) 186
Mva1269I GAATGC 1 cut(s) 115
MwoI GCNNNNNNNGC 2 cut(s) 110, 119
NciI CCSGG 1 cut(s) 18
NdeII GATC 1 cut(s) 114
NlaIII CATG 1 cut(s) 121
NmeAIII GCCGAG 1 cut(s) 124
NmuCI GTSAC 1 cut(s) 127
PctI GAATGC 1 cut(s) 115
PkrI GCNGC 2 cut(s) 15, 155
PspPI GGNCC 1 cut(s) 15
RsaI GTAC 1 cut(s) 9
RsaNI GTAC 1 cut(s) 8
SatI GCNGC 2 cut(s) 14, 154
Sau3AI GATC 1 cut(s) 114
Sau96I GGNCC 1 cut(s) 15
ScrFI CCNGG 1 cut(s) 18
SduI GDGCHC 1 cut(s) 148
SetI ASST 2 cut(s) 29, 129
Sse9I AATT 1 cut(s) 186
SsiI CCGC 2 cut(s) 13, 162
SspMI CTAG 1 cut(s) 68
StyD4I CCNGG 1 cut(s) 16
TaiI ACGT 1 cut(s) 129
TasI AATT 1 cut(s) 186
TauI GCSGC 1 cut(s) 16
TseFI GTSAC 1 cut(s) 127
TseI GCWGC 1 cut(s) 153
Tsp45I GTSAC 1 cut(s) 127
XspI CTAG 1 cut(s) 68
ZraI GACGTC 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.