Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0000857

Physical Location & Seq

Genomic Coordinates Reverse (-)

30420565 .. 30426119

Gene Structure 5555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00407790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGAGAGTTGAGAGCCTCAGTTCTACCTTGAGCAGCTCTTTGATTTTCGGTGCAGAGAAGCTTTATGGGTATAGATCATCTGCAACATTCAGGTTTAGGCGAGTACCCATAAGCTGTGCTGTTCGTTTCCGACCCTGCATTGATATACACAAGGGGAAAGTGAAACAGATTGTTGGGTCGACGCTTTCAGATTCGAAGGAAGATGGGCCTGCTCTGGTTACCAATTTTGAGTCGGATAAGTCGGCCGGGGAGTATGCAAAGATGTATAAGGAGGATGGGCTTACAGGTGGTCATGTGATAATGCTGGGAGCAGACCCTTTGAGTAGAGCTGCGGCCATTGAAGCTCTGCATGCCTATCCTGGTGGTTTGCAAGTAGGAGGTGGGATCAATTCAGATAATTCTTTGCAGTACATAGAAGAAGGGGCTAGCCACGTCATTGTCACTTCTTATGTATTTAATAATGGGCAAATGGACCTTGAAAGGCTTAAAGATCTTGTTCTTGTTGTTGGAAAAGAAAGGCTTGTTTTAGACCTTAGCTGCAGAAAGAGGGAAGGTAAATATGCAATTGTCACCGATAGATGGCAAAAGTTCAGTGATGTGTATCTTGACAAGAAAATATTAGACTTCCTTGCCAAGTATGCAGACGAGTTTCTGGTACATGGTGTCGATGTTGAAGGGAAAAAACTGGGGATTGATGAAGAGCTTGTGGAATTGCTTGGCAAACATTCTCCGATTCCTGTAACTTATGCTGGTGGTGTTACAGTAATGGCTGATTTAGAGAGGATAAAAGTGGCAGGGCTAGGACATGTGGATGTTACTGTCGGCAGCGCTTTGGATATTCCTGTAACTTATGCTGGTGGTGTCACGGTAATAGCTGATTTAGAGAGGATAAAAGTGGCAGGGCTGGGACATGTGGATGTTACTGTTGGCAGCGCTTTGGATGTTTTCGGGGGCAACTTGCCGTGCAAAGAAGTCGTTGCTTGGCATACTCAGCAGGAAGCATTGACTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0000162 GO:0003674 GO:0003824 GO:0003949 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

His_biosynth

Protein Analysis

337

Amino Acids

36.41

Weight (kDa)

5.76

Isoelectric Point (pI)

29.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
His_biosynth	PF00977	45 - 278	6.5e-28	Histidine biosynthesis protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000857)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36230
fragaria_vesca	FvH4_6g18790 FvH4_6g18790 FvH4_6g18790 FvH4_6g18790 FvH4_6g18790 FvH4_6g18790
malus_domestica	MD12G1036500.v1.1 MD14G1023300.v1.1
prunus_persica	Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1
pyrus_communis	pycom12g02400 pycom14g02220 pycom14g02230
rosa_chinensis	RchiOBHm_Chr1g0324901 RchiOBHm_Chr1g0350151 RchiOBHm_Chr3g0473801 RchiOBHm_Chr4g0393091 RchiOBHm_Chr4g0409701 RchiOBHm_Chr5g0027171
rosa_laevigata	RLG00000014193 RLG00000023983 RLG00000035737
rosa_multiflora	Rmu_sc0001207.1_g000028 Rmu_sc0002986.1_g000013 Rmu_sc0007035.1_g000005 Rmu_sc0016122.1_g000001 Rmu_sc0037919.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029230 Rroxscaffold_1G00029310 Rroxscaffold_2G00114250 Rroxscaffold_3G00260930 Rroxscaffold_3G00260940 Rroxscaffold_4G00311820 Rroxscaffold_4G00332560 Rroxscaffold_5G00338520 Rroxscaffold_5G00355640 Rroxscaffold_6G00407790
rosa_rugosa	Rorug01G0107500 Rorug02G0045900 Rorug03G0135600 Rorug06G0225600 Rorug07G0319400 Rorug07G0330900
rosa_samantha	Rh1AG080400 Rh1AG119900 Rh1AG120000 Rh1AG233100 Rh1CG115000 Rh1CG217700 Rh2BG241500 Rh2BG353000 Rh2DG556200 Rh3AG186100 Rh3AG202300 Rh3BG214400 Rh3CG211200 Rh3DG210400 Rh3DG227900 Rh5AG343700 Rh5DG191000
rosa_wichuraiana	Rw1G018100 Rw3G017000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	179
AciI	CCGC	1 cut(s)	332
AclWI	GGATC	1 cut(s)	392
AcoI	YGGCCR	2 cut(s)	243, 333
AfaI	GTAC	3 cut(s)	105, 410, 657
AfeI	AGCGCT	2 cut(s)	829, 934
AfiI	CCNNNNNNNGG	1 cut(s)	579
AflIII	ACRYGT	2 cut(s)	805, 910
AgsI	TTSAA	3 cut(s)	341, 479, 674
AjiI	CACGTC	1 cut(s)	433
AjnI	CCWGG	1 cut(s)	358
AluBI	AGCT	8 cut(s)	36, 61, 114, 329, 344, 537, 703, 875
AluI	AGCT	8 cut(s)	36, 61, 114, 329, 344, 537, 703, 875
AlwI	GGATC	1 cut(s)	392
Aor51HI	AGCGCT	2 cut(s)	829, 934
AoxI	GGCC	3 cut(s)	206, 243, 333
ApeKI	GCWGC	5 cut(s)	33, 329, 537, 825, 930
AspLEI	GCGC	2 cut(s)	830, 935
AspS9I	GGNCC	2 cut(s)	206, 472
AsuC2I	CCSGG	1 cut(s)	247
AsuHPI	GGTGA	1 cut(s)	562
AsuII	TTCGAA	1 cut(s)	194
AsuNHI	GCTAGC	1 cut(s)	425
AvaII	GGWCC	1 cut(s)	472
BbvI	GCAGC	5 cut(s)	45, 316, 524, 837, 942
BccI	CCATC	3 cut(s)	197, 269, 573
BceAI	ACGGC	1 cut(s)	946
BcgI	CGANNNNNNTGC	2 cut(s)	955, 989
BciT130I	CCWGG	1 cut(s)	360
BcnI	CCSGG	1 cut(s)	247
BfaI	CTAG	2 cut(s)	426, 800
BfmI	CTRYAG	1 cut(s)	538
BfoI	RGCGCY	2 cut(s)	831, 936
BglII	AGATCT	1 cut(s)	490
BisI	GCNGC	6 cut(s)	34, 330, 333, 538, 826, 931
BlsI	GCNGC	6 cut(s)	35, 331, 334, 539, 827, 932
Bme1390I	CCNGG	2 cut(s)	247, 360
Bme18I	GGWCC	1 cut(s)	472
BmgBI	CACGTC	1 cut(s)	433
BmgT120I	GGNCC	2 cut(s)	206, 472
BmrFI	CCNGG	2 cut(s)	247, 360
BmrI	ACTGGG	1 cut(s)	695
BmtI	GCTAGC	1 cut(s)	429
BmuI	ACTGGG	1 cut(s)	695
Bpu10I	CCTNAGC	1 cut(s)	533
Bpu14I	TTCGAA	1 cut(s)	194
BpuEI	CTTGAG	1 cut(s)	49
BpuMI	CCSGG	1 cut(s)	247
BsaBI	GATNNNNATC	1 cut(s)	600
BsaJI	CCNNGG	1 cut(s)	246
Bsc4I	CCNNNNNNNGG	1 cut(s)	579
Bse1I	ACTGG	1 cut(s)	690
Bse8I	GATNNNNATC	1 cut(s)	600
BseBI	CCWGG	1 cut(s)	360
BseDI	CCNNGG	1 cut(s)	246
BseGI	GGATG	4 cut(s)	280, 817, 922, 946
BseJI	GATNNNNATC	1 cut(s)	600
BseLI	CCNNNNNNNGG	1 cut(s)	579
BseMII	CTCAG	2 cut(s)	31, 1004
BseNI	ACTGG	1 cut(s)	690
BseX3I	CGGCCG	1 cut(s)	243
BseXI	GCAGC	5 cut(s)	45, 316, 524, 837, 942
BseYI	CCCAGC	2 cut(s)	304, 904
BsgI	GTGCAG	1 cut(s)	72
Bsh1285I	CGRYCG	1 cut(s)	246
BshFI	GGCC	3 cut(s)	208, 245, 335
BsiEI	CGRYCG	1 cut(s)	246
BsiSI	CCGG	1 cut(s)	246
BslFI	GGGAC	1 cut(s)	921
BslI	CCNNNNNNNGG	1 cut(s)	579
BsmFI	GGGAC	1 cut(s)	921
BsnI	GGCC	3 cut(s)	208, 245, 335
Bsp119I	TTCGAA	1 cut(s)	194
Bsp143I	GATC	3 cut(s)	74, 384, 490
BspACI	CCGC	1 cut(s)	332
BspANI	GGCC	3 cut(s)	208, 245, 335
BspCNI	CTCAG	2 cut(s)	30, 1003
BspMAI	CTGCAG	1 cut(s)	542
BspOI	GCTAGC	1 cut(s)	429
BspPI	GGATC	1 cut(s)	392
BspQI	GCTCTTC	1 cut(s)	693
BspT104I	TTCGAA	1 cut(s)	194
BsrI	ACTGG	1 cut(s)	690
BssECI	CCNNGG	1 cut(s)	246
BssMI	GATC	3 cut(s)	74, 384, 490
Bst2UI	CCWGG	1 cut(s)	360
Bst4CI	ACNGT	5 cut(s)	763, 820, 868, 925, 1009
Bst6I	CTCTTC	1 cut(s)	693
BstBI	TTCGAA	1 cut(s)	194
BstC8I	GCNNGC	3 cut(s)	210, 351, 427
BstDEI	CTNAG	3 cut(s)	17, 533, 990
BstEII	GGTNACC	1 cut(s)	217
BstF5I	GGATG	4 cut(s)	280, 817, 922, 946
BstH2I	RGCGCY	2 cut(s)	831, 936
BstHHI	GCGC	2 cut(s)	830, 935
BstKTI	GATC	3 cut(s)	77, 387, 493
BstMBI	GATC	3 cut(s)	74, 384, 490
BstMCI	CGRYCG	1 cut(s)	246
BstMWI	GCNNNNNNNGC	4 cut(s)	341, 350, 638, 991
BstNI	CCWGG	1 cut(s)	360
BstNSI	RCATGY	3 cut(s)	353, 809, 914
BstPI	GGTNACC	1 cut(s)	217
BstSCI	CCNGG	2 cut(s)	245, 358
BstSFI	CTRYAG	1 cut(s)	538
BstV1I	GCAGC	5 cut(s)	45, 316, 524, 837, 942
BstX2I	RGATCY	1 cut(s)	490
BstYI	RGATCY	1 cut(s)	490
BstZI	CGGCCG	1 cut(s)	243
BsuRI	GGCC	3 cut(s)	208, 245, 335
BtrI	CACGTC	1 cut(s)	433
BtsCI	GGATG	4 cut(s)	280, 817, 922, 946
BtsIMutI	CAGTG	1 cut(s)	598
Cac8I	GCNNGC	3 cut(s)	210, 351, 427
CfoI	GCGC	2 cut(s)	830, 935
Cfr13I	GGNCC	2 cut(s)	206, 472
CseI	GACGC	1 cut(s)	190
Csp6I	GTAC	3 cut(s)	104, 409, 656
CviAII	CATG	5 cut(s)	293, 350, 659, 806, 911
CviQI	GTAC	3 cut(s)	104, 409, 656
DdeI	CTNAG	3 cut(s)	17, 533, 990
DpnI	GATC	3 cut(s)	76, 386, 492
DpnII	GATC	3 cut(s)	74, 384, 490
EaeI	YGGCCR	2 cut(s)	243, 333
EagI	CGGCCG	1 cut(s)	243
Eam1104I	CTCTTC	1 cut(s)	693
EarI	CTCTTC	1 cut(s)	693
EclXI	CGGCCG	1 cut(s)	243
Eco47I	GGWCC	1 cut(s)	472
Eco47III	AGCGCT	2 cut(s)	829, 934
Eco52I	CGGCCG	1 cut(s)	243
Eco91I	GGTNACC	1 cut(s)	217
EcoO65I	GGTNACC	1 cut(s)	217
EcoRII	CCWGG	1 cut(s)	358
FaeI	CATG	5 cut(s)	296, 353, 662, 809, 914
FalI	AAGNNNNNCTT	2 cut(s)	504, 536
FaqI	GGGAC	1 cut(s)	921
FatI	CATG	5 cut(s)	292, 349, 658, 805, 910
FblI	GTMKAC	1 cut(s)	179
Fnu4HI	GCNGC	6 cut(s)	34, 330, 333, 538, 826, 931
FokI	GGATG	4 cut(s)	287, 824, 929, 953
Fsp4HI	GCNGC	6 cut(s)	34, 330, 333, 538, 826, 931
FspBI	CTAG	2 cut(s)	426, 800
GlaI	GCGC	2 cut(s)	829, 934
GluI	GCNGC	6 cut(s)	34, 330, 333, 538, 826, 931
GsaI	CCCAGC	2 cut(s)	308, 908
HaeII	RGCGCY	2 cut(s)	831, 936
HaeIII	GGCC	3 cut(s)	208, 245, 335
HapII	CCGG	1 cut(s)	246
HgaI	GACGC	1 cut(s)	190
HhaI	GCGC	2 cut(s)	830, 935
Hin1II	CATG	5 cut(s)	296, 353, 662, 809, 914
Hin6I	GCGC	2 cut(s)	828, 933
HinP1I	GCGC	2 cut(s)	828, 933
HincII	GTYRAC	1 cut(s)	180
HindII	GTYRAC	1 cut(s)	180
HindIII	AAGCTT	1 cut(s)	59
HinfI	GANTC	3 cut(s)	191, 230, 733
HpaII	CCGG	1 cut(s)	246
HphI	GGTGA	1 cut(s)	562
Hpy166II	GTNNAC	1 cut(s)	180
Hpy188I	TCNGA	5 cut(s)	131, 190, 235, 394, 732
Hpy188III	TCNNGA	1 cut(s)	605
Hpy8I	GTNNAC	1 cut(s)	180
Hpy99I	CGWCG	1 cut(s)	184
HpyAV	CCTTC	4 cut(s)	190, 413, 545, 668
HpyCH4III	ACNGT	5 cut(s)	763, 820, 868, 925, 1009
HpyCH4IV	ACGT	1 cut(s)	432
HpyF10VI	GCNNNNNNNGC	4 cut(s)	341, 350, 638, 991
HpyF3I	CTNAG	3 cut(s)	17, 533, 990
HpySE526I	ACGT	1 cut(s)	432
Hsp92II	CATG	5 cut(s)	296, 353, 662, 809, 914
HspAI	GCGC	2 cut(s)	828, 933
Kzo9I	GATC	3 cut(s)	74, 384, 490
LguI	GCTCTTC	1 cut(s)	693
LmnI	GCTCC	1 cut(s)	308
Lsp1109I	GCAGC	5 cut(s)	45, 316, 524, 837, 942
MaeI	CTAG	2 cut(s)	426, 800
MaeII	ACGT	1 cut(s)	432
MaeIII	GTNAC	9 cut(s)	217, 439, 568, 739, 757, 814, 844, 862, 919
MalI	GATC	3 cut(s)	76, 386, 492
MboI	GATC	3 cut(s)	74, 384, 490
MboII	GAAGA	3 cut(s)	212, 428, 710
MfeI	CAATTG	1 cut(s)	564
MflI	RGATCY	1 cut(s)	490
MluCI	AATT	5 cut(s)	223, 388, 397, 564, 710
MlyI	GAGTC	1 cut(s)	239
MmeI	TCCRAC	3 cut(s)	154, 213, 487
MnlI	CCTC	6 cut(s)	26, 265, 371, 540, 774, 879
MseI	TTAA	2 cut(s)	456, 486
MslI	CAYNNNNRTG	2 cut(s)	810, 915
MspI	CCGG	1 cut(s)	246
MspR9I	CCNGG	2 cut(s)	247, 360
MunI	CAATTG	1 cut(s)	564
MvaI	CCWGG	1 cut(s)	360
MwoI	GCNNNNNNNGC	4 cut(s)	341, 350, 638, 991
NciI	CCSGG	1 cut(s)	247
NdeII	GATC	3 cut(s)	74, 384, 490
NheI	GCTAGC	1 cut(s)	425
NlaIII	CATG	5 cut(s)	296, 353, 662, 809, 914
NmuCI	GTSAC	3 cut(s)	439, 568, 862
NspI	RCATGY	3 cut(s)	353, 809, 914
NspV	TTCGAA	1 cut(s)	194
PaeI	GCATGC	1 cut(s)	353
PciI	ACATGT	2 cut(s)	805, 910
PciSI	GCTCTTC	1 cut(s)	693
PfeI	GAWTC	2 cut(s)	191, 733
PkrI	GCNGC	6 cut(s)	35, 331, 334, 539, 827, 932
PleI	GAGTC	1 cut(s)	238
PpsI	GAGTC	1 cut(s)	238
PscI	ACATGT	2 cut(s)	805, 910
Psp6I	CCWGG	1 cut(s)	358
PspEI	GGTNACC	1 cut(s)	217
PspFI	CCCAGC	2 cut(s)	304, 904
PspGI	CCWGG	1 cut(s)	358
PspPI	GGNCC	2 cut(s)	206, 472
PstI	CTGCAG	1 cut(s)	542
PsuI	RGATCY	1 cut(s)	490
RsaI	GTAC	3 cut(s)	105, 410, 657
RsaNI	GTAC	3 cut(s)	104, 409, 656
RseI	CAYNNNNRTG	2 cut(s)	810, 915
SalI	GTCGAC	1 cut(s)	178
SapI	GCTCTTC	1 cut(s)	693
SaqAI	TTAA	2 cut(s)	456, 486
SatI	GCNGC	6 cut(s)	34, 330, 333, 538, 826, 931
Sau3AI	GATC	3 cut(s)	74, 384, 490
Sau96I	GGNCC	2 cut(s)	206, 472
SchI	GAGTC	1 cut(s)	239
ScrFI	CCNGG	2 cut(s)	247, 360
SfcI	CTRYAG	1 cut(s)	538
SfuI	TTCGAA	1 cut(s)	194
SinI	GGWCC	1 cut(s)	472
SmiMI	CAYNNNNRTG	2 cut(s)	810, 915
SmlI	CTYRAG	1 cut(s)	28
SmoI	CTYRAG	1 cut(s)	28
SphI	GCATGC	1 cut(s)	353
Sse9I	AATT	5 cut(s)	223, 388, 397, 564, 710
SsiI	CCGC	1 cut(s)	332
SspI	AATATT	1 cut(s)	618
SspMI	CTAG	2 cut(s)	426, 800
StyD4I	CCNGG	2 cut(s)	245, 358
TaaI	ACNGT	5 cut(s)	763, 820, 868, 925, 1009
TaiI	ACGT	1 cut(s)	435
TaqI	TCGA	3 cut(s)	179, 194, 666
TasI	AATT	5 cut(s)	223, 388, 397, 564, 710
TatI	WGTACW	1 cut(s)	408
TauI	GCSGC	1 cut(s)	335
TfiI	GAWTC	2 cut(s)	191, 733
Tru1I	TTAA	2 cut(s)	456, 486
Tru9I	TTAA	2 cut(s)	456, 486
TscAI	CASTG	1 cut(s)	598
TseFI	GTSAC	3 cut(s)	439, 568, 862
TseI	GCWGC	5 cut(s)	33, 329, 537, 825, 930
Tsp45I	GTSAC	3 cut(s)	439, 568, 862
TspDTI	ATGAA	1 cut(s)	711
TspRI	CASTG	1 cut(s)	598
VpaK11BI	GGWCC	1 cut(s)	472
XceI	RCATGY	3 cut(s)	353, 809, 914
XmiI	GTMKAC	1 cut(s)	179
XspI	CTAG	2 cut(s)	426, 800

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.