Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0000857

Physical Location & Seq

Genomic Coordinates Reverse (-)

71037833 .. 71039244

Gene Structure 1412 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035737

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGGTCTAGGCCATCTGCAACGTTCAGGGAAAGTGAAACAAATTGTTGGGTCGACGCTTTCGGATTCGAAGGAAGATGGGCCAGCTCTGGTTACCAATTTCGAGTCAGATAAGTTGGCGGGGGAGTATGCAAAGATGTATAAGGAAGATGGGCTTACAGGTGGCCATGTTATAATGCTGGGGGCAGATCCTTTGAGTAGAGCTGCGGCCATTGAAGCTCTGCATGCCTATTCTGGAGGTGGGATCAATTCAGATAATTCTTTGCAATACATAGAAGAAGGGGCTAGCCATGTCATTGTCACTTCTTATGTATTTAATAATGGGCAAATGGTCCTTGAAAGGCTTAAAGATCTTGTTCATGTTGTTGGAAAAGAAGGGCTTGTTTTAGACCTTAGCTGTAGAAAGAGGAACACAGTGGACGAGTTTTGCAACGAGCTACTGGAACTATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0000162 GO:0003674 GO:0003824 GO:0003949 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

His_biosynth

Protein Analysis

151

Amino Acids

16.18

Weight (kDa)

5.15

Isoelectric Point (pI)

32.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000857)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36230
fragaria_vesca	FvH4_6g18790 FvH4_6g18790 FvH4_6g18790 FvH4_6g18790 FvH4_6g18790 FvH4_6g18790
malus_domestica	MD12G1036500.v1.1 MD14G1023300.v1.1
prunus_persica	Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1
pyrus_communis	pycom12g02400 pycom14g02220 pycom14g02230
rosa_chinensis	RchiOBHm_Chr1g0324901 RchiOBHm_Chr1g0350151 RchiOBHm_Chr3g0473801 RchiOBHm_Chr4g0393091 RchiOBHm_Chr4g0409701 RchiOBHm_Chr5g0027171
rosa_laevigata	RLG00000014193 RLG00000023983 RLG00000035737
rosa_multiflora	Rmu_sc0001207.1_g000028 Rmu_sc0002986.1_g000013 Rmu_sc0007035.1_g000005 Rmu_sc0016122.1_g000001 Rmu_sc0037919.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029230 Rroxscaffold_1G00029310 Rroxscaffold_2G00114250 Rroxscaffold_3G00260930 Rroxscaffold_3G00260940 Rroxscaffold_4G00311820 Rroxscaffold_4G00332560 Rroxscaffold_5G00338520 Rroxscaffold_5G00355640 Rroxscaffold_6G00407790
rosa_rugosa	Rorug01G0107500 Rorug02G0045900 Rorug03G0135600 Rorug06G0225600 Rorug07G0319400 Rorug07G0330900
rosa_samantha	Rh1AG080400 Rh1AG119900 Rh1AG120000 Rh1AG233100 Rh1CG115000 Rh1CG217700 Rh2BG241500 Rh2BG353000 Rh2DG556200 Rh3AG186100 Rh3AG202300 Rh3BG214400 Rh3CG211200 Rh3DG210400 Rh3DG227900 Rh5AG343700 Rh5DG191000
rosa_wichuraiana	Rw1G018100 Rw3G017000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	173
AccI	GTMKAC	1 cut(s)	53
AciI	CCGC	2 cut(s)	119, 206
AclI	AACGTT	1 cut(s)	22
AclWI	GGATC	2 cut(s)	182, 251
AcoI	YGGCCR	2 cut(s)	163, 207
AgsI	TTSAA	2 cut(s)	215, 338
AluBI	AGCT	5 cut(s)	86, 203, 218, 396, 436
AluI	AGCT	5 cut(s)	86, 203, 218, 396, 436
AlwI	GGATC	2 cut(s)	182, 251
AoxI	GGCC	4 cut(s)	10, 80, 163, 207
ApeKI	GCWGC	1 cut(s)	203
AspS9I	GGNCC	2 cut(s)	80, 331
AsuII	TTCGAA	1 cut(s)	68
AsuNHI	GCTAGC	1 cut(s)	284
AvaII	GGWCC	1 cut(s)	331
BalI	TGGCCA	1 cut(s)	165
BbvI	GCAGC	1 cut(s)	190
BccI	CCATC	3 cut(s)	21, 71, 143
BfaI	CTAG	2 cut(s)	8, 285
BfmI	CTRYAG	1 cut(s)	397
BglII	AGATCT	1 cut(s)	349
BisI	GCNGC	2 cut(s)	204, 207
BlsI	GCNGC	2 cut(s)	205, 208
Bme18I	GGWCC	1 cut(s)	331
BmgT120I	GGNCC	2 cut(s)	80, 331
BmtI	GCTAGC	1 cut(s)	288
BpmI	CTGGAG	1 cut(s)	255
Bpu10I	CCTNAGC	1 cut(s)	392
Bpu14I	TTCGAA	1 cut(s)	68
Bse1I	ACTGG	1 cut(s)	444
BseNI	ACTGG	1 cut(s)	444
BseXI	GCAGC	1 cut(s)	190
BseYI	CCCAGC	1 cut(s)	178
BshFI	GGCC	4 cut(s)	12, 82, 165, 209
BsnI	GGCC	4 cut(s)	12, 82, 165, 209
Bsp119I	TTCGAA	1 cut(s)	68
Bsp143I	GATC	3 cut(s)	187, 243, 349
BspACI	CCGC	2 cut(s)	119, 206
BspANI	GGCC	4 cut(s)	12, 82, 165, 209
BspOI	GCTAGC	1 cut(s)	288
BspPI	GGATC	2 cut(s)	182, 251
BspT104I	TTCGAA	1 cut(s)	68
BsrI	ACTGG	1 cut(s)	444
BssMI	GATC	3 cut(s)	187, 243, 349
Bst4CI	ACNGT	1 cut(s)	415
BstBI	TTCGAA	1 cut(s)	68
BstC8I	GCNNGC	3 cut(s)	84, 225, 286
BstDEI	CTNAG	1 cut(s)	392
BstEII	GGTNACC	1 cut(s)	91
BstKTI	GATC	3 cut(s)	190, 246, 352
BstMBI	GATC	3 cut(s)	187, 243, 349
BstMWI	GCNNNNNNNGC	2 cut(s)	215, 224
BstNSI	RCATGY	1 cut(s)	227
BstPI	GGTNACC	1 cut(s)	91
BstSFI	CTRYAG	1 cut(s)	397
BstV1I	GCAGC	1 cut(s)	190
BstX2I	RGATCY	2 cut(s)	187, 349
BstYI	RGATCY	2 cut(s)	187, 349
BsuRI	GGCC	4 cut(s)	12, 82, 165, 209
BtsIMutI	CAGTG	1 cut(s)	420
Cac8I	GCNNGC	3 cut(s)	84, 225, 286
Cfr13I	GGNCC	2 cut(s)	80, 331
CseI	GACGC	1 cut(s)	64
CviAII	CATG	4 cut(s)	167, 224, 290, 359
DdeI	CTNAG	1 cut(s)	392
DpnI	GATC	3 cut(s)	189, 245, 351
DpnII	GATC	3 cut(s)	187, 243, 349
EaeI	YGGCCR	2 cut(s)	163, 207
Eco47I	GGWCC	1 cut(s)	331
Eco91I	GGTNACC	1 cut(s)	91
EcoO65I	GGTNACC	1 cut(s)	91
FaeI	CATG	4 cut(s)	170, 227, 293, 362
FaiI	YATR	9 cut(s)	129, 141, 168, 173, 225, 272, 291, 309, 360
FalI	AAGNNNNNCTT	4 cut(s)	138, 170, 363, 395
FatI	CATG	4 cut(s)	166, 223, 289, 358
FauI	CCCGC	1 cut(s)	112
FblI	GTMKAC	1 cut(s)	53
Fnu4HI	GCNGC	2 cut(s)	204, 207
Fsp4HI	GCNGC	2 cut(s)	204, 207
FspBI	CTAG	2 cut(s)	8, 285
GluI	GCNGC	2 cut(s)	204, 207
GsaI	CCCAGC	1 cut(s)	182
GsuI	CTGGAG	1 cut(s)	255
HaeIII	GGCC	4 cut(s)	12, 82, 165, 209
HgaI	GACGC	1 cut(s)	64
Hin1II	CATG	4 cut(s)	170, 227, 293, 362
HincII	GTYRAC	1 cut(s)	54
HindII	GTYRAC	1 cut(s)	54
HinfI	GANTC	2 cut(s)	65, 104
Hpy166II	GTNNAC	2 cut(s)	54, 418
Hpy188I	TCNGA	3 cut(s)	64, 109, 253
Hpy188III	TCNNGA	1 cut(s)	234
Hpy8I	GTNNAC	2 cut(s)	54, 418
Hpy99I	CGWCG	1 cut(s)	58
HpyAV	CCTTC	3 cut(s)	64, 272, 368
HpyCH4III	ACNGT	1 cut(s)	415
HpyCH4IV	ACGT	1 cut(s)	22
HpyCH4V	TGCA	5 cut(s)	19, 131, 223, 265, 429
HpyF10VI	GCNNNNNNNGC	2 cut(s)	215, 224
HpyF3I	CTNAG	1 cut(s)	392
HpySE526I	ACGT	1 cut(s)	22
Hsp92II	CATG	4 cut(s)	170, 227, 293, 362
Kzo9I	GATC	3 cut(s)	187, 243, 349
LpnPI	CCDG	7 cut(s)	12, 74, 96, 144, 164, 219, 425
Lsp1109I	GCAGC	1 cut(s)	190
MaeI	CTAG	2 cut(s)	8, 285
MaeII	ACGT	1 cut(s)	22
MaeIII	GTNAC	2 cut(s)	91, 298
MalI	GATC	3 cut(s)	189, 245, 351
MboI	GATC	3 cut(s)	187, 243, 349
MboII	GAAGA	3 cut(s)	86, 158, 287
MflI	RGATCY	2 cut(s)	187, 349
MlsI	TGGCCA	1 cut(s)	165
MluCI	AATT	4 cut(s)	42, 97, 247, 256
MluNI	TGGCCA	1 cut(s)	165
MlyI	GAGTC	1 cut(s)	113
MmeI	TCCRAC	1 cut(s)	346
MnlI	CCTC	2 cut(s)	230, 399
Mox20I	TGGCCA	1 cut(s)	165
MscI	TGGCCA	1 cut(s)	165
MseI	TTAA	2 cut(s)	315, 345
Msp20I	TGGCCA	1 cut(s)	165
MwoI	GCNNNNNNNGC	2 cut(s)	215, 224
NdeII	GATC	3 cut(s)	187, 243, 349
NheI	GCTAGC	1 cut(s)	284
NlaIII	CATG	4 cut(s)	170, 227, 293, 362
NmuCI	GTSAC	1 cut(s)	298
NspI	RCATGY	1 cut(s)	227
NspV	TTCGAA	1 cut(s)	68
PaeI	GCATGC	1 cut(s)	227
PfeI	GAWTC	1 cut(s)	65
PkrI	GCNGC	2 cut(s)	205, 208
PleI	GAGTC	1 cut(s)	112
PpsI	GAGTC	1 cut(s)	112
PsiI	TTATAA	1 cut(s)	173
Psp1406I	AACGTT	1 cut(s)	22
PspEI	GGTNACC	1 cut(s)	91
PspFI	CCCAGC	1 cut(s)	178
PspPI	GGNCC	2 cut(s)	80, 331
PsuI	RGATCY	2 cut(s)	187, 349
SalI	GTCGAC	1 cut(s)	52
SaqAI	TTAA	2 cut(s)	315, 345
SatI	GCNGC	2 cut(s)	204, 207
Sau3AI	GATC	3 cut(s)	187, 243, 349
Sau96I	GGNCC	2 cut(s)	80, 331
SchI	GAGTC	1 cut(s)	113
SetI	ASST	9 cut(s)	25, 88, 163, 205, 220, 241, 393, 398, 438
SfcI	CTRYAG	1 cut(s)	397
SfuI	TTCGAA	1 cut(s)	68
SinI	GGWCC	1 cut(s)	331
SphI	GCATGC	1 cut(s)	227
Sse9I	AATT	4 cut(s)	42, 97, 247, 256
SsiI	CCGC	2 cut(s)	119, 206
SspMI	CTAG	2 cut(s)	8, 285
TaaI	ACNGT	1 cut(s)	415
TaiI	ACGT	1 cut(s)	25
TaqI	TCGA	3 cut(s)	53, 68, 102
TasI	AATT	4 cut(s)	42, 97, 247, 256
TauI	GCSGC	1 cut(s)	209
TfiI	GAWTC	1 cut(s)	65
Tru1I	TTAA	2 cut(s)	315, 345
Tru9I	TTAA	2 cut(s)	315, 345
TscAI	CASTG	1 cut(s)	420
TseFI	GTSAC	1 cut(s)	298
TseI	GCWGC	1 cut(s)	203
Tsp45I	GTSAC	1 cut(s)	298
TspDTI	ATGAA	1 cut(s)	347
TspRI	CASTG	1 cut(s)	420
VpaK11BI	GGWCC	1 cut(s)	331
XceI	RCATGY	1 cut(s)	227
XmiI	GTMKAC	1 cut(s)	53
XspI	CTAG	2 cut(s)	8, 285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.