Rorug03G0135600

Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Reverse (-)
11141952 .. 11144388
2437 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0135600.1

Sequence Viewer

Length: 1929 bp
ATGACAAAAATGATTCCAAGAAAAAAGAGACAAATTAGCATTTACATCACTGGTGGTGGAAAAAGGAAAAAGAAAGAAGCTGAAATGGATGATGAATGCCCAAGGTCATCTAACTGGTGTAATCCCTTGAATGATGTGGGGCCGAGAGATGAGGAAACTGTTGTTGAGGCAGCCCATCTGGTTGGTAACCGAATTAATAGATCGGTTGATGGTGATGCAGTGAAGAGGGTATTCAATGATGTGGTTGAAAAAGAGAATGATAGTGCTGTTTTGGGTGATGGAGCAGTAGGTCAAGTTAAAGATGGTTTATGTGTCAAGTCAAATGCAAACAAGCAATGGCAAGGAAGTGTCAATGAAACAGGTGAAGGGCATGAAGGTAACTACACCCCAAGAGTGGGAAACCAATATGATGGCGGTGCAAGTCTAAGAAGCTCTATGCTACAGAAAAGGGTTACTAAAAACATCAAAGCAACCTATAAAGAAAAGGGAAAAGCAGTGCTCGTTGAAGAACCAAAAGAGCATAAATGTACCAAGAAGAGGGGGAGAAAACCTCAAGGTAAAACCTACAATACCAGAACCAAAGAGCATAAGTCCTATGAGAAGGTTGATGATTCAAGCTCTGGTGACTCTGATTTCTATATTGATAGTGACTATGAGCAGACTAAAGGTGATGATGATATAGATTTTGATGAAAATGTCACAAATCCAAGCACAATTGAGGAATATGAGGAGATGGGATTTATGGGAGTATGCTCTGATGATGAAGATAACAGTGATGAGTTTGCTAGTTGGGATGGATCTGAAACAGAAGAGGATGAAGATGGTAATCCTCTTCCCAAGAGATCATCTAAGAATCCAAAAACCAAGGCCTGGAATAGAGCTATTGATTTAGGTACTCCAAATTTCTGTGTCGGACAAGCTTTTGCGAATTCAGAAGTCTTGAAGGAAGCTGTGAGAGAGTATTGTATTGTTTATCAGAGAGGATTGTGGTTCCAAAAGAACAGCAAGATTAAGATTGAGGTACGATGTCAGTGGGGGTGTCCTTTTTGGCTTTATGCTTCAAGAATCAACAATGAGGATCCCACCATGTACATTGAGACTCTGAGGCAAGCTCATAAGTGTCATGTAATTCAAAAAAGCCATCATCTAAACTGCAACAGGGTTGCTAGAGAAGTTCAAGAAGATCTCATGGTTGATACCGAATGGTCAAGGACCGGTATTCAAAACAGAATTCAGAAGAAGTACAAGCTAGATGTCTCTGTGAAAACTATATATAGAGGGAAACTGGCAGCCAAAAGAATGAATGAAGGCCACTACTTGCAGCAATACAATAAGCTTGCATCGTACAGGAAAGAATTGCTAAGGAGCAATCCAGGGTCAACTGTTGAAATCAAGACACAAATGGATGGTGAGGTTAGAAGATTTCATAGAATGTACATATGCCTAGCTGCTTGCAAGGAGGGATGGATCAAGGGTTGTAGGCCTCTAATAGGGTTGGATGGCTGTCATATCAAAGGCCAACATCCAGGGCAGATACTTTGTGCAGTGGGCATAGATGCAAATAATGGAATTTTTCCGGTTGCTTATTCAGTTGTTGAGGTTGAAAACACTGAAACTTGGAAATGGTTCTTAGAGTATCTCATATGGGATTTGAAGATGGAAAATCCCATGTCATATACTTTTATCACGGATAAACAAAAGGGCCTAGGGATTGCCATAGCTGATTTGATGCCGGGAGCAGAGCATAGACATTGCGTTAGACATTTGTACAATAATTTCAAGTGCAAGCATCCTGGTGAAGGACTCAAGCAGACTTTATGGAATGCAGCAAGGTCCACCACACATATATGGTTCAATAGAAACATGGAAGCAATGGAGAAGCAATCAGATGGGGCTAGGAAATGGTTTGAAGACAAGCCACCAGAATAG

Protein Analysis

642

Amino Acids

73.44

Weight (kDa)

7.76

Isoelectric Point (pI)

39.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DBD_Tnp_Mut PF03108 303 - 358 9.2e-07 MuDR family transposase
MULE PF10551 497 - 592 4e-17 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 870
AciI CCGC 1 cut(s) 414
AclWI GGATC 4 cut(s) 805, 1073, 1086, 1475
AcsI RAATTY 4 cut(s) 901, 928, 1230, 1569
AfaI GTAC 8 cut(s) 529, 895, 1023, 1091, 1244, 1346, 1436, 1769
AfiI CCNNNNNNNGG 6 cut(s) 394, 395, 537, 870, 1490, 1799
AgeI ACCGGT 1 cut(s) 1214
AjnI CCWGG 4 cut(s) 869, 1372, 1525, 1792
Alw21I GWGCWC 1 cut(s) 501
Alw26I GTCTC 3 cut(s) 22, 1091, 1261
AlwI GGATC 4 cut(s) 805, 1073, 1086, 1475
AoxI GGCC 6 cut(s) 140, 867, 1309, 1481, 1516, 1702
ApeKI GCWGC 5 cut(s) 170, 1289, 1321, 1448, 1826
ApoI RAATTY 4 cut(s) 901, 928, 1230, 1569
AseI ATTAAT 1 cut(s) 195
AsiGI ACCGGT 1 cut(s) 1214
Asp700I GAANNNNTTC 1 cut(s) 1625
AspA2I CCTAGG 1 cut(s) 1705
AspS9I GGNCC 4 cut(s) 140, 1212, 1702, 1833
AsuC2I CCSGG 1 cut(s) 1734
AsuHPI GGTGA 7 cut(s) 224, 287, 374, 635, 680, 1421, 1808
AvaII GGWCC 2 cut(s) 1212, 1833
AvrII CCTAGG 1 cut(s) 1705
BamHI GGATCC 1 cut(s) 1078
BbsI GAAGAC 1 cut(s) 1917
Bbv12I GWGCWC 1 cut(s) 501
BbvI GCAGC 5 cut(s) 182, 1301, 1333, 1435, 1838
BciT130I CCWGG 4 cut(s) 871, 1374, 1527, 1794
BcnI CCSGG 1 cut(s) 1734
BcoDI GTCTC 3 cut(s) 22, 1091, 1261
BfaI CTAG 6 cut(s) 786, 1167, 1250, 1445, 1706, 1896
BfmI CTRYAG 1 cut(s) 440
BglII AGATCT 1 cut(s) 1183
BisI GCNGC 5 cut(s) 171, 1290, 1322, 1449, 1827
BlnI CCTAGG 1 cut(s) 1705
BlsI GCNGC 5 cut(s) 172, 1291, 1323, 1450, 1828
Bme1390I CCNGG 5 cut(s) 871, 1374, 1527, 1734, 1794
Bme18I GGWCC 2 cut(s) 1212, 1833
BmgT120I GGNCC 4 cut(s) 140, 1212, 1702, 1833
BmiI GGNNCC 3 cut(s) 141, 992, 1080
BmrFI CCNGG 5 cut(s) 871, 1374, 1527, 1734, 1794
BmsI GCATC 5 cut(s) 205, 1349, 1546, 1719, 1798
BpiI GAAGAC 1 cut(s) 1917
BplI GAGNNNNNCTC 4 cut(s) 535, 567, 1096, 1128
Bpu10I CCTNAGC 1 cut(s) 1361
BpuEI CTTGAG 2 cut(s) 537, 1790
BpuMI CCSGG 1 cut(s) 1734
BsaBI GATNNNNATC 1 cut(s) 825
BsaJI CCNNGG 5 cut(s) 101, 864, 1373, 1526, 1705
BsaWI WCCGGW 2 cut(s) 1214, 1576
Bsc4I CCNNNNNNNGG 6 cut(s) 394, 395, 537, 870, 1490, 1799
Bse118I RCCGGY 1 cut(s) 1214
Bse1I ACTGG 3 cut(s) 55, 119, 1290
Bse3DI GCAATG 3 cut(s) 341, 1750, 1878
Bse8I GATNNNNATC 1 cut(s) 825
BseBI CCWGG 4 cut(s) 871, 1374, 1527, 1794
BseDI CCNNGG 5 cut(s) 101, 864, 1373, 1526, 1705
BseGI GGATG 8 cut(s) 94, 799, 820, 1411, 1469, 1504, 1522, 1789
BseJI GATNNNNATC 1 cut(s) 825
BseLI CCNNNNNNNGG 6 cut(s) 394, 395, 537, 870, 1490, 1799
BseMI GCAATG 3 cut(s) 341, 1750, 1878
BseMII CTCAG 1 cut(s) 1094
BseNI ACTGG 3 cut(s) 55, 119, 1290
BseRI GAGGAG 1 cut(s) 743
BseXI GCAGC 5 cut(s) 182, 1301, 1333, 1435, 1838
BsgI GTGCAG 1 cut(s) 1563
BshFI GGCC 6 cut(s) 142, 869, 1311, 1483, 1518, 1704
BshTI ACCGGT 1 cut(s) 1214
BsiHKAI GWGCWC 1 cut(s) 501
BsiSI CCGG 3 cut(s) 1215, 1577, 1733
BslI CCNNNNNNNGG 6 cut(s) 394, 395, 537, 870, 1490, 1799
BsmAI GTCTC 3 cut(s) 22, 1091, 1261
BsmI GAATGC 2 cut(s) 101, 1828
BsnI GGCC 6 cut(s) 142, 869, 1311, 1483, 1518, 1704
Bsp1286I GDGCHC 1 cut(s) 501
Bsp1407I TGTACA 3 cut(s) 1089, 1434, 1767
Bsp143I GATC 6 cut(s) 200, 797, 842, 1078, 1183, 1467
BspACI CCGC 1 cut(s) 414
BspANI GGCC 6 cut(s) 142, 869, 1311, 1483, 1518, 1704
BspCNI CTCAG 1 cut(s) 1095
BspLI GGNNCC 3 cut(s) 141, 992, 1080
BspPI GGATC 4 cut(s) 805, 1073, 1086, 1475
BsrDI GCAATG 3 cut(s) 341, 1750, 1878
BsrFI RCCGGY 1 cut(s) 1214
BsrGI TGTACA 3 cut(s) 1089, 1434, 1767
BsrI ACTGG 3 cut(s) 55, 119, 1290
BssAI RCCGGY 1 cut(s) 1214
BssECI CCNNGG 5 cut(s) 101, 864, 1373, 1526, 1705
BssMI GATC 6 cut(s) 200, 797, 842, 1078, 1183, 1467
BssT1I CCWWGG 3 cut(s) 101, 864, 1705
Bst2UI CCWGG 4 cut(s) 871, 1374, 1527, 1794
Bst4CI ACNGT 3 cut(s) 160, 773, 1384
Bst6I CTCTTC 4 cut(s) 218, 530, 804, 837
BstAUI TGTACA 3 cut(s) 1089, 1434, 1767
BstC8I GCNNGC 4 cut(s) 1110, 1338, 1453, 1787
BstDEI CTNAG 5 cut(s) 425, 849, 1103, 1361, 1630
BstEII GGTNACC 1 cut(s) 185
BstENI CCTNNNNNAGG 2 cut(s) 1488, 1797
BstF5I GGATG 8 cut(s) 94, 799, 820, 1411, 1469, 1504, 1522, 1789
BstKTI GATC 6 cut(s) 203, 800, 845, 1081, 1186, 1470
BstMAI GTCTC 3 cut(s) 22, 1091, 1261
BstMBI GATC 6 cut(s) 200, 797, 842, 1078, 1183, 1467
BstNI CCWGG 4 cut(s) 871, 1374, 1527, 1794
BstPI GGTNACC 1 cut(s) 185
BstSCI CCNGG 5 cut(s) 869, 1372, 1525, 1732, 1792
BstSFI CTRYAG 1 cut(s) 440
BstV1I GCAGC 5 cut(s) 182, 1301, 1333, 1435, 1838
BstV2I GAAGAC 1 cut(s) 1917
BstX2I RGATCY 3 cut(s) 797, 1078, 1183
BstXI CCANNNNNNTGG 2 cut(s) 182, 410
BstYI RGATCY 3 cut(s) 797, 1078, 1183
BsuRI GGCC 6 cut(s) 142, 869, 1311, 1483, 1518, 1704
BtsCI GGATG 8 cut(s) 94, 799, 820, 1411, 1469, 1504, 1522, 1789
BtsI GCAGTG 3 cut(s) 225, 501, 1551
BtsIMutI CAGTG 7 cut(s) 48, 225, 501, 778, 1037, 1551, 1608
Cac8I GCNNGC 4 cut(s) 1110, 1338, 1453, 1787
Cfr10I RCCGGY 1 cut(s) 1214
Cfr13I GGNCC 4 cut(s) 140, 1212, 1702, 1833
Csp6I GTAC 8 cut(s) 528, 894, 1022, 1090, 1243, 1345, 1435, 1768
CspAI ACCGGT 1 cut(s) 1214
CviAII CATG 6 cut(s) 371, 1087, 1124, 1189, 1669, 1864
CviQI GTAC 8 cut(s) 528, 894, 1022, 1090, 1243, 1345, 1435, 1768
DdeI CTNAG 5 cut(s) 425, 849, 1103, 1361, 1630
DpnI GATC 6 cut(s) 202, 799, 844, 1080, 1185, 1469
DpnII GATC 6 cut(s) 200, 797, 842, 1078, 1183, 1467
Eam1104I CTCTTC 4 cut(s) 218, 530, 804, 837
EarI CTCTTC 4 cut(s) 218, 530, 804, 837
Eco130I CCWWGG 3 cut(s) 101, 864, 1705
Eco147I AGGCCT 2 cut(s) 869, 1483
Eco47I GGWCC 2 cut(s) 1212, 1833
Eco91I GGTNACC 1 cut(s) 185
EcoNI CCTNNNNNAGG 2 cut(s) 1488, 1797
EcoO109I RGGNCCY 1 cut(s) 1702
EcoO65I GGTNACC 1 cut(s) 185
EcoRI GAATTC 2 cut(s) 928, 1230
EcoRII CCWGG 4 cut(s) 869, 1372, 1525, 1792
EcoT14I CCWWGG 3 cut(s) 101, 864, 1705
ErhI CCWWGG 3 cut(s) 101, 864, 1705
FaeI CATG 6 cut(s) 374, 1090, 1127, 1192, 1672, 1867
FatI CATG 6 cut(s) 370, 1086, 1123, 1188, 1668, 1863
FauNDI CATATG 2 cut(s) 1439, 1643
Fnu4HI GCNGC 5 cut(s) 171, 1290, 1322, 1449, 1827
FokI GGATG 8 cut(s) 101, 806, 827, 1418, 1476, 1509, 1511, 1776
Fsp4HI GCNGC 5 cut(s) 171, 1290, 1322, 1449, 1827
FspBI CTAG 6 cut(s) 786, 1167, 1250, 1445, 1706, 1896
GluI GCNGC 5 cut(s) 171, 1290, 1322, 1449, 1827
HaeIII GGCC 6 cut(s) 142, 869, 1311, 1483, 1518, 1704
HapII CCGG 3 cut(s) 1215, 1577, 1733
Hin1II CATG 6 cut(s) 374, 1090, 1127, 1192, 1672, 1867
HincII GTYRAC 1 cut(s) 1380
HindII GTYRAC 1 cut(s) 1380
HindIII AAGCTT 2 cut(s) 918, 1334
HinfI GANTC 7 cut(s) 13, 611, 626, 853, 1065, 1099, 1803
HpaII CCGG 3 cut(s) 1215, 1577, 1733
HphI GGTGA 7 cut(s) 224, 287, 374, 635, 680, 1421, 1808
Hpy166II GTNNAC 2 cut(s) 1380, 1836
Hpy188I TCNGA 9 cut(s) 631, 757, 802, 914, 934, 978, 1104, 1236, 1888
Hpy188III TCNNGA 4 cut(s) 940, 1062, 1178, 1393
Hpy8I GTNNAC 2 cut(s) 1380, 1836
HpyAV CCTTC 6 cut(s) 359, 368, 595, 937, 1301, 1793
HpyCH4III ACNGT 3 cut(s) 160, 773, 1384
HpyF3I CTNAG 5 cut(s) 425, 849, 1103, 1361, 1630
Hsp92II CATG 6 cut(s) 374, 1090, 1127, 1192, 1672, 1867
Kzo9I GATC 6 cut(s) 200, 797, 842, 1078, 1183, 1467
LmnI GCTCC 3 cut(s) 281, 1365, 1736
Lsp1109I GCAGC 5 cut(s) 182, 1301, 1333, 1435, 1838
LweI GCATC 5 cut(s) 205, 1349, 1546, 1719, 1798
MaeI CTAG 6 cut(s) 786, 1167, 1250, 1445, 1706, 1896
MaeIII GTNAC 6 cut(s) 185, 377, 451, 623, 647, 697
MalI GATC 6 cut(s) 202, 799, 844, 1080, 1185, 1469
MboI GATC 6 cut(s) 200, 797, 842, 1078, 1183, 1467
MfeI CAATTG 1 cut(s) 714
MflI RGATCY 3 cut(s) 797, 1078, 1183
MhlI GDGCHC 1 cut(s) 501
MlyI GAGTC 3 cut(s) 620, 1093, 1797
MmeI TCCRAC 2 cut(s) 892, 1476
MroXI GAANNNNTTC 1 cut(s) 1625
MseI TTAA 3 cut(s) 195, 297, 1011
MslI CAYNNNNRTG 2 cut(s) 1794, 1846
MspI CCGG 3 cut(s) 1215, 1577, 1733
MspR9I CCNGG 5 cut(s) 871, 1374, 1527, 1734, 1794
MunI CAATTG 1 cut(s) 714
Mva1269I GAATGC 2 cut(s) 101, 1828
MvaI CCWGG 4 cut(s) 871, 1374, 1527, 1794
NciI CCSGG 1 cut(s) 1734
NdeI CATATG 2 cut(s) 1439, 1643
NdeII GATC 6 cut(s) 200, 797, 842, 1078, 1183, 1467
NlaIII CATG 6 cut(s) 374, 1090, 1127, 1192, 1672, 1867
NlaIV GGNNCC 3 cut(s) 141, 992, 1080
NmeAIII GCCGAG 1 cut(s) 168
NmuCI GTSAC 3 cut(s) 623, 647, 697
PceI AGGCCT 2 cut(s) 869, 1483
PctI GAATGC 2 cut(s) 101, 1828
PdmI GAANNNNTTC 1 cut(s) 1625
PfeI GAWTC 4 cut(s) 13, 611, 853, 1065
PflMI CCANNNNNTGG 1 cut(s) 870
PinAI ACCGGT 1 cut(s) 1214
PkrI GCNGC 5 cut(s) 172, 1291, 1323, 1450, 1828
PleI GAGTC 3 cut(s) 620, 1093, 1797
PpsI GAGTC 3 cut(s) 620, 1093, 1797
PshBI ATTAAT 1 cut(s) 195
Psp6I CCWGG 4 cut(s) 869, 1372, 1525, 1792
PspEI GGTNACC 1 cut(s) 185
PspGI CCWGG 4 cut(s) 869, 1372, 1525, 1792
PspN4I GGNNCC 3 cut(s) 141, 992, 1080
PspPI GGNCC 4 cut(s) 140, 1212, 1702, 1833
PsuI RGATCY 3 cut(s) 797, 1078, 1183
RsaI GTAC 8 cut(s) 529, 895, 1023, 1091, 1244, 1346, 1436, 1769
RsaNI GTAC 8 cut(s) 528, 894, 1022, 1090, 1243, 1345, 1435, 1768
RseI CAYNNNNRTG 2 cut(s) 1794, 1846
SaqAI TTAA 3 cut(s) 195, 297, 1011
SatI GCNGC 5 cut(s) 171, 1290, 1322, 1449, 1827
Sau3AI GATC 6 cut(s) 200, 797, 842, 1078, 1183, 1467
Sau96I GGNCC 4 cut(s) 140, 1212, 1702, 1833
SchI GAGTC 3 cut(s) 620, 1093, 1797
ScrFI CCNGG 5 cut(s) 871, 1374, 1527, 1734, 1794
SduI GDGCHC 1 cut(s) 501
SfaNI GCATC 5 cut(s) 205, 1349, 1546, 1719, 1798
SfcI CTRYAG 1 cut(s) 440
SinI GGWCC 2 cut(s) 1212, 1833
SmiMI CAYNNNNRTG 2 cut(s) 1794, 1846
SmlI CTYRAG 2 cut(s) 552, 1805
SmoI CTYRAG 2 cut(s) 552, 1805
SseBI AGGCCT 2 cut(s) 869, 1483
SsiI CCGC 1 cut(s) 414
SspMI CTAG 6 cut(s) 786, 1167, 1250, 1445, 1706, 1896
StuI AGGCCT 2 cut(s) 869, 1483
StyD4I CCNGG 5 cut(s) 869, 1372, 1525, 1732, 1792
StyI CCWWGG 3 cut(s) 101, 864, 1705
TaaI ACNGT 3 cut(s) 160, 773, 1384
TatI WGTACW 4 cut(s) 1089, 1242, 1434, 1767
TfiI GAWTC 4 cut(s) 13, 611, 853, 1065
Tru1I TTAA 3 cut(s) 195, 297, 1011
Tru9I TTAA 3 cut(s) 195, 297, 1011
TscAI CASTG 7 cut(s) 55, 225, 501, 778, 1037, 1551, 1615
TseFI GTSAC 3 cut(s) 623, 647, 697
TseI GCWGC 5 cut(s) 170, 1289, 1321, 1448, 1826
Tsp45I GTSAC 3 cut(s) 623, 647, 697
TspDTI ATGAA 9 cut(s) 108, 369, 387, 705, 777, 831, 1316, 1320, 1415
TspGWI ACGGA 1 cut(s) 1703
TspRI CASTG 7 cut(s) 55, 225, 501, 778, 1037, 1551, 1615
Van91I CCANNNNNTGG 1 cut(s) 870
VpaK11BI GGWCC 2 cut(s) 1212, 1833
VspI ATTAAT 1 cut(s) 195
XagI CCTNNNNNAGG 2 cut(s) 1488, 1797
XapI RAATTY 4 cut(s) 901, 928, 1230, 1569
XmaJI CCTAGG 1 cut(s) 1705
XmnI GAANNNNTTC 1 cut(s) 1625
XspI CTAG 6 cut(s) 786, 1167, 1250, 1445, 1706, 1896
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.