Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0037919.1

Orthogroup ID

OG0000857

Physical Location & Seq

Genomic Coordinates Reverse (-)

112 .. 710

Gene Structure 599 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0037919.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

atgagagttgagagcctcggttctactttggcttctgagttcagtacagtttttcagagcagctcttcgattttcggtacgaagaagattgatgggtataggccatctgcaacgttcaggtttaggcgagtacccatttgctgtgctgttcgtttccgaccctgcattgatatacacaaggggaaagtgaaacagattgttgggtcgacgctttcggattcgaaggaagatgggcctgcgctggttaccaatttcgagtcggataagtcggctggggagtatgcaaagatgtataaggaagatgggcttccaggtggccatgtgataatgctgggagcagaccctttgagtagaactgcggccattgaagctctgcatgcctatcctggtgggtctttagctgccttcttgttattgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0000162 GO:0003674 GO:0003824 GO:0003949 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

His_biosynth

Protein Analysis

139

Amino Acids

14.95

Weight (kDa)

8.82

Isoelectric Point (pI)

43.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000857)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36230
fragaria_vesca	FvH4_6g18790 FvH4_6g18790 FvH4_6g18790 FvH4_6g18790 FvH4_6g18790 FvH4_6g18790
malus_domestica	MD12G1036500.v1.1 MD14G1023300.v1.1
prunus_persica	Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1
pyrus_communis	pycom12g02400 pycom14g02220 pycom14g02230
rosa_chinensis	RchiOBHm_Chr1g0324901 RchiOBHm_Chr1g0350151 RchiOBHm_Chr3g0473801 RchiOBHm_Chr4g0393091 RchiOBHm_Chr4g0409701 RchiOBHm_Chr5g0027171
rosa_laevigata	RLG00000014193 RLG00000023983 RLG00000035737
rosa_multiflora	Rmu_sc0001207.1_g000028 Rmu_sc0002986.1_g000013 Rmu_sc0007035.1_g000005 Rmu_sc0016122.1_g000001 Rmu_sc0037919.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029230 Rroxscaffold_1G00029310 Rroxscaffold_2G00114250 Rroxscaffold_3G00260930 Rroxscaffold_3G00260940 Rroxscaffold_4G00311820 Rroxscaffold_4G00332560 Rroxscaffold_5G00338520 Rroxscaffold_5G00355640 Rroxscaffold_6G00407790
rosa_rugosa	Rorug01G0107500 Rorug02G0045900 Rorug03G0135600 Rorug06G0225600 Rorug07G0319400 Rorug07G0330900
rosa_samantha	Rh1AG080400 Rh1AG119900 Rh1AG120000 Rh1AG233100 Rh1CG115000 Rh1CG217700 Rh2BG241500 Rh2BG353000 Rh2DG556200 Rh3AG186100 Rh3AG202300 Rh3BG214400 Rh3CG211200 Rh3DG210400 Rh3DG227900 Rh5AG343700 Rh5DG191000
rosa_wichuraiana	Rw1G018100 Rw3G017000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	206
AciI	CCGC	1 cut(s)	359
AclI	AACGTT	1 cut(s)	113
AcoI	YGGCCR	2 cut(s)	316, 360
AfaI	GTAC	3 cut(s)	46, 79, 132
AgsI	TTSAA	1 cut(s)	368
AjnI	CCWGG	2 cut(s)	310, 385
AluBI	AGCT	3 cut(s)	63, 371, 401
AluI	AGCT	3 cut(s)	63, 371, 401
AoxI	GGCC	4 cut(s)	101, 233, 316, 360
ApeKI	GCWGC	2 cut(s)	60, 401
AspLEI	GCGC	1 cut(s)	241
AspS9I	GGNCC	1 cut(s)	233
AsuII	TTCGAA	1 cut(s)	221
BalI	TGGCCA	1 cut(s)	318
BbvI	GCAGC	2 cut(s)	72, 388
BccI	CCATC	4 cut(s)	86, 112, 224, 296
BciT130I	CCWGG	2 cut(s)	312, 387
BisI	GCNGC	3 cut(s)	61, 360, 402
BlsI	GCNGC	3 cut(s)	62, 361, 403
Bme1390I	CCNGG	2 cut(s)	312, 387
BmgT120I	GGNCC	1 cut(s)	233
BmrFI	CCNGG	2 cut(s)	312, 387
Bpu14I	TTCGAA	1 cut(s)	221
BsaJI	CCNNGG	1 cut(s)	16
BseBI	CCWGG	2 cut(s)	312, 387
BseDI	CCNNGG	1 cut(s)	16
BseMII	CTCAG	1 cut(s)	27
BseXI	GCAGC	2 cut(s)	72, 388
BseYI	CCCAGC	2 cut(s)	272, 331
BshFI	GGCC	4 cut(s)	103, 235, 318, 362
BsnI	GGCC	4 cut(s)	103, 235, 318, 362
Bsp119I	TTCGAA	1 cut(s)	221
BspACI	CCGC	1 cut(s)	359
BspANI	GGCC	4 cut(s)	103, 235, 318, 362
BspCNI	CTCAG	1 cut(s)	28
BspQI	GCTCTTC	1 cut(s)	70
BspT104I	TTCGAA	1 cut(s)	221
BssECI	CCNNGG	1 cut(s)	16
Bst2UI	CCWGG	2 cut(s)	312, 387
Bst4CI	ACNGT	1 cut(s)	49
Bst6I	CTCTTC	1 cut(s)	70
BstBI	TTCGAA	1 cut(s)	221
BstC8I	GCNNGC	2 cut(s)	237, 378
BstDEI	CTNAG	1 cut(s)	36
BstEII	GGTNACC	1 cut(s)	244
BstHHI	GCGC	1 cut(s)	241
BstMWI	GCNNNNNNNGC	2 cut(s)	368, 377
BstNI	CCWGG	2 cut(s)	312, 387
BstNSI	RCATGY	1 cut(s)	380
BstPI	GGTNACC	1 cut(s)	244
BstSCI	CCNGG	2 cut(s)	310, 385
BstV1I	GCAGC	2 cut(s)	72, 388
BsuRI	GGCC	4 cut(s)	103, 235, 318, 362
Cac8I	GCNNGC	2 cut(s)	237, 378
CfoI	GCGC	1 cut(s)	241
Cfr13I	GGNCC	1 cut(s)	233
CseI	GACGC	1 cut(s)	217
Csp6I	GTAC	3 cut(s)	45, 78, 131
CviAII	CATG	2 cut(s)	320, 377
CviQI	GTAC	3 cut(s)	45, 78, 131
DdeI	CTNAG	1 cut(s)	36
EaeI	YGGCCR	2 cut(s)	316, 360
Eam1104I	CTCTTC	1 cut(s)	70
EarI	CTCTTC	1 cut(s)	70
Eco91I	GGTNACC	1 cut(s)	244
EcoO65I	GGTNACC	1 cut(s)	244
EcoRII	CCWGG	2 cut(s)	310, 385
FaeI	CATG	2 cut(s)	323, 380
FaiI	YATR	6 cut(s)	99, 173, 282, 294, 321, 378
FalI	AAGNNNNNCTT	2 cut(s)	291, 323
FatI	CATG	2 cut(s)	319, 376
FblI	GTMKAC	1 cut(s)	206
Fnu4HI	GCNGC	3 cut(s)	61, 360, 402
Fsp4HI	GCNGC	3 cut(s)	61, 360, 402
GlaI	GCGC	1 cut(s)	240
GluI	GCNGC	3 cut(s)	61, 360, 402
GsaI	CCCAGC	2 cut(s)	276, 335
HaeIII	GGCC	4 cut(s)	103, 235, 318, 362
HgaI	GACGC	1 cut(s)	217
HhaI	GCGC	1 cut(s)	241
Hin1II	CATG	2 cut(s)	323, 380
Hin6I	GCGC	1 cut(s)	239
HinP1I	GCGC	1 cut(s)	239
HincII	GTYRAC	1 cut(s)	207
HindII	GTYRAC	1 cut(s)	207
HinfI	GANTC	2 cut(s)	218, 257
Hpy166II	GTNNAC	1 cut(s)	207
Hpy188I	TCNGA	5 cut(s)	37, 57, 158, 217, 262
Hpy8I	GTNNAC	1 cut(s)	207
Hpy99I	CGWCG	1 cut(s)	211
HpyAV	CCTTC	2 cut(s)	217, 415
HpyCH4III	ACNGT	1 cut(s)	49
HpyCH4IV	ACGT	1 cut(s)	113
HpyCH4V	TGCA	4 cut(s)	110, 165, 284, 376
HpyF10VI	GCNNNNNNNGC	2 cut(s)	368, 377
HpyF3I	CTNAG	1 cut(s)	36
HpySE526I	ACGT	1 cut(s)	113
Hsp92II	CATG	2 cut(s)	323, 380
HspAI	GCGC	1 cut(s)	239
LguI	GCTCTTC	1 cut(s)	70
LmnI	GCTCC	1 cut(s)	335
Lsp1109I	GCAGC	2 cut(s)	72, 388
MaeII	ACGT	1 cut(s)	113
MaeIII	GTNAC	1 cut(s)	244
MboII	GAAGA	5 cut(s)	57, 94, 97, 239, 311
MlsI	TGGCCA	1 cut(s)	318
MluCI	AATT	1 cut(s)	250
MluNI	TGGCCA	1 cut(s)	318
MlyI	GAGTC	1 cut(s)	266
MmeI	TCCRAC	2 cut(s)	181, 240
MnlI	CCTC	1 cut(s)	26
Mox20I	TGGCCA	1 cut(s)	318
MscI	TGGCCA	1 cut(s)	318
Msp20I	TGGCCA	1 cut(s)	318
MspR9I	CCNGG	2 cut(s)	312, 387
MvaI	CCWGG	2 cut(s)	312, 387
MwoI	GCNNNNNNNGC	2 cut(s)	368, 377
NlaIII	CATG	2 cut(s)	323, 380
NspI	RCATGY	1 cut(s)	380
NspV	TTCGAA	1 cut(s)	221
PaeI	GCATGC	1 cut(s)	380
PciSI	GCTCTTC	1 cut(s)	70
PfeI	GAWTC	1 cut(s)	218
PkrI	GCNGC	3 cut(s)	62, 361, 403
PleI	GAGTC	1 cut(s)	265
PpsI	GAGTC	1 cut(s)	265
Psp1406I	AACGTT	1 cut(s)	113
Psp6I	CCWGG	2 cut(s)	310, 385
PspEI	GGTNACC	1 cut(s)	244
PspFI	CCCAGC	2 cut(s)	272, 331
PspGI	CCWGG	2 cut(s)	310, 385
PspPI	GGNCC	1 cut(s)	233
RsaI	GTAC	3 cut(s)	46, 79, 132
RsaNI	GTAC	3 cut(s)	45, 78, 131
SalI	GTCGAC	1 cut(s)	205
SapI	GCTCTTC	1 cut(s)	70
SatI	GCNGC	3 cut(s)	61, 360, 402
Sau96I	GGNCC	1 cut(s)	233
SchI	GAGTC	1 cut(s)	266
ScrFI	CCNGG	2 cut(s)	312, 387
SetI	ASST	6 cut(s)	65, 116, 122, 316, 373, 403
SfuI	TTCGAA	1 cut(s)	221
SphI	GCATGC	1 cut(s)	380
Sse9I	AATT	1 cut(s)	250
SsiI	CCGC	1 cut(s)	359
StyD4I	CCNGG	2 cut(s)	310, 385
TaaI	ACNGT	1 cut(s)	49
TaiI	ACGT	1 cut(s)	116
TaqI	TCGA	4 cut(s)	68, 206, 221, 255
TasI	AATT	1 cut(s)	250
TatI	WGTACW	1 cut(s)	44
TauI	GCSGC	1 cut(s)	362
TfiI	GAWTC	1 cut(s)	218
TseI	GCWGC	2 cut(s)	60, 401
XceI	RCATGY	1 cut(s)	380
XmiI	GTMKAC	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.