pycom12g02400

Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
Physical Location & Seq
Forward (+)
2074353 .. 2077623
3271 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g02400.4

Sequence Viewer

Length: 948 bp
ATGAAAGTTGAAACCTTCAATGCCGCTTTCTCTTCCGATGTTCGTACATTTCACAGGCTTCCGAGCTCTTCAATTTTCGGCGCAAAAAGGCCTAAAATTTTGACTGCCAGACCTTCCATGGCCTCCGGATTCACCCGGCGGATTTCGATCCGCTGCGCTGTTCGCTTCCGGCCTTGCATTGACATACACAAGGGTAAAGTGAAGCAGATTGTTGGGTCTACCCTTTCGGATTCGAAGGATGATGGGTCGGTTCTTGTTACCAATTTTGTGTCGGATAAGTCCGCGGCGGAGTATGCAAAGATGTATAAAGAAGATGGGCTTACAGGTGGTCATGTGATCATGCTTGGAGCTGACCCTTTTAGTAGAGCTGCAGCCATTGAAGCTTTGCATGCCTATCCTGGTGGCTTGCAAGTAGGAGGTGGGATCAATTCAGAAAATTGTTTGCGTTACATAGAAGAAGGGGCTAGCCATGTCATTGTCACCTCCTATGTATTTAACAATGGACAAATGGACCTTGAAAGGCTCAAAGATCTTGTTCTTGTTGTTGGAAAAGAGAGGCTTGTTTTAGACCTTAGCTGCAGAAAGAGGGATGGTAAATATGCAATCGTCACGGATAGATGGCAGAAGTTCAGTGATGTGAATCTTGATGAGGAAATATTGAATTTTCTTGCCAACTTTGCGGATGAATTTCTGGTACATGGTGTTGATGTTGAAGGGAAAAAGCTGGGCATTGATGAGGAGCTTGTGACGTTGCTTGGAAAGCATTCACCGATTCCTGTAACTTATGCTGGTGGTGTGACTGTAATGGCTGATTTAGAGAGGATTAAAGTGGCAGGACTGGGACACGTAGATGTTACTGTTGGCAGCGCTTTGGATGTTTTTGGAGGCAACTTGTCATACAAAGACGTCGTTGCTTGGCATGCCCAGCAGGAGTCCTTGACTGTTTAG

Protein Analysis

316

Amino Acids

34.33

Weight (kDa)

6.51

Isoelectric Point (pI)

34.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 909
AccI GTMKAC 1 cut(s) 218
AccII CGCG 1 cut(s) 284
AccIII TCCGGA 1 cut(s) 125
AciI CCGC 7 cut(s) 24, 139, 151, 282, 284, 287, 680
AclWI GGATC 2 cut(s) 142, 431
AcsI RAATTY 3 cut(s) 96, 661, 686
AcyI GRCGYC 1 cut(s) 906
AfaI GTAC 2 cut(s) 46, 696
AfeI AGCGCT 1 cut(s) 868
AflIII ACRYGT 1 cut(s) 844
AgsI TTSAA 7 cut(s) 11, 19, 72, 380, 518, 661, 713
AjnI CCWGG 1 cut(s) 397
AluBI AGCT 7 cut(s) 66, 350, 368, 383, 576, 724, 742
AluI AGCT 7 cut(s) 66, 350, 368, 383, 576, 724, 742
Alw21I GWGCWC 1 cut(s) 68
AlwI GGATC 2 cut(s) 142, 431
Aor13HI TCCGGA 1 cut(s) 125
Aor51HI AGCGCT 1 cut(s) 868
AoxI GGCC 3 cut(s) 89, 120, 170
ApeKI GCWGC 5 cut(s) 153, 368, 371, 576, 864
ApoI RAATTY 3 cut(s) 96, 661, 686
Asp700I GAANNNNTTC 1 cut(s) 763
AspLEI GCGC 3 cut(s) 83, 158, 869
AspS9I GGNCC 1 cut(s) 511
AsuC2I CCSGG 1 cut(s) 136
AsuHPI GGTGA 3 cut(s) 124, 472, 759
AsuII TTCGAA 1 cut(s) 233
AsuNHI GCTAGC 1 cut(s) 464
AvaII GGWCC 1 cut(s) 511
BanII GRGCYC 1 cut(s) 68
Bbv12I GWGCWC 1 cut(s) 68
BbvI GCAGC 5 cut(s) 140, 355, 383, 563, 876
BccI CCATC 4 cut(s) 236, 308, 584, 612
BciT130I CCWGG 1 cut(s) 399
BclI TGATCA 1 cut(s) 336
BcnI CCSGG 1 cut(s) 136
BfaI CTAG 1 cut(s) 465
BfmI CTRYAG 2 cut(s) 369, 577
BfoI RGCGCY 1 cut(s) 870
BglII AGATCT 1 cut(s) 529
BisI GCNGC 7 cut(s) 24, 154, 285, 369, 372, 577, 865
BlsI GCNGC 7 cut(s) 25, 155, 286, 370, 373, 578, 866
Bme1390I CCNGG 2 cut(s) 136, 399
Bme18I GGWCC 1 cut(s) 511
BmgT120I GGNCC 1 cut(s) 511
BmrFI CCNGG 2 cut(s) 136, 399
BmrI ACTGGG 1 cut(s) 848
BmtI GCTAGC 1 cut(s) 468
BmuI ACTGGG 1 cut(s) 848
Bpu10I CCTNAGC 1 cut(s) 572
Bpu14I TTCGAA 1 cut(s) 233
BpuMI CCSGG 1 cut(s) 136
BsaAI YACGTR 1 cut(s) 847
BsaBI GATNNNNATC 2 cut(s) 146, 639
BsaHI GRCGYC 1 cut(s) 906
BsaJI CCNNGG 2 cut(s) 117, 282
BsaWI WCCGGW 1 cut(s) 125
Bse1I ACTGG 1 cut(s) 843
Bse8I GATNNNNATC 2 cut(s) 146, 639
BseAI TCCGGA 1 cut(s) 125
BseBI CCWGG 1 cut(s) 399
BseDI CCNNGG 2 cut(s) 117, 282
BseGI GGATG 4 cut(s) 244, 595, 688, 880
BseJI GATNNNNATC 2 cut(s) 146, 639
BseNI ACTGG 1 cut(s) 843
BseRI GAGGAG 1 cut(s) 752
BseXI GCAGC 5 cut(s) 140, 355, 383, 563, 876
BseYI CCCAGC 2 cut(s) 724, 924
Bsh1236I CGCG 1 cut(s) 284
BshFI GGCC 3 cut(s) 91, 122, 172
BsiHKAI GWGCWC 1 cut(s) 68
BsiSI CCGG 3 cut(s) 126, 136, 169
BslFI GGGAC 1 cut(s) 855
BsmFI GGGAC 1 cut(s) 855
BsmI GAATGC 1 cut(s) 763
BsnI GGCC 3 cut(s) 91, 122, 172
Bsp119I TTCGAA 1 cut(s) 233
Bsp1286I GDGCHC 1 cut(s) 68
Bsp13I TCCGGA 1 cut(s) 125
Bsp143I GATC 4 cut(s) 147, 336, 423, 529
Bsp19I CCATGG 1 cut(s) 117
BspACI CCGC 7 cut(s) 24, 139, 151, 282, 284, 287, 680
BspANI GGCC 3 cut(s) 91, 122, 172
BspEI TCCGGA 1 cut(s) 125
BspFNI CGCG 1 cut(s) 284
BspMAI CTGCAG 2 cut(s) 373, 581
BspOI GCTAGC 1 cut(s) 468
BspPI GGATC 2 cut(s) 142, 431
BspQI GCTCTTC 1 cut(s) 73
BspT104I TTCGAA 1 cut(s) 233
BsrI ACTGG 1 cut(s) 843
BssECI CCNNGG 2 cut(s) 117, 282
BssMI GATC 4 cut(s) 147, 336, 423, 529
BssNI GRCGYC 1 cut(s) 906
BssT1I CCWWGG 1 cut(s) 117
Bst2UI CCWGG 1 cut(s) 399
Bst4CI ACNGT 3 cut(s) 802, 859, 943
Bst6I CTCTTC 2 cut(s) 37, 73
BstACI GRCGYC 1 cut(s) 906
BstBAI YACGTR 1 cut(s) 847
BstBI TTCGAA 1 cut(s) 233
BstC8I GCNNGC 4 cut(s) 390, 407, 466, 921
BstDEI CTNAG 1 cut(s) 572
BstDSI CCRYGG 2 cut(s) 117, 282
BstF5I GGATG 4 cut(s) 244, 595, 688, 880
BstFNI CGCG 1 cut(s) 284
BstH2I RGCGCY 1 cut(s) 870
BstHHI GCGC 3 cut(s) 83, 158, 869
BstKTI GATC 4 cut(s) 150, 339, 426, 532
BstMBI GATC 4 cut(s) 147, 336, 423, 529
BstMWI GCNNNNNNNGC 8 cut(s) 162, 293, 380, 389, 677, 760, 920, 925
BstNI CCWGG 1 cut(s) 399
BstNSI RCATGY 2 cut(s) 392, 923
BstSCI CCNGG 2 cut(s) 134, 397
BstSFI CTRYAG 2 cut(s) 369, 577
BstUI CGCG 1 cut(s) 284
BstV1I GCAGC 5 cut(s) 140, 355, 383, 563, 876
BstX2I RGATCY 1 cut(s) 529
BstYI RGATCY 1 cut(s) 529
BsuRI GGCC 3 cut(s) 91, 122, 172
BtgI CCRYGG 2 cut(s) 117, 282
BtsCI GGATG 4 cut(s) 244, 595, 688, 880
BtsIMutI CAGTG 1 cut(s) 637
Cac8I GCNNGC 4 cut(s) 390, 407, 466, 921
CfoI GCGC 3 cut(s) 83, 158, 869
Cfr13I GGNCC 1 cut(s) 511
Cfr42I CCGCGG 1 cut(s) 285
Csp6I GTAC 2 cut(s) 45, 695
CviAII CATG 7 cut(s) 118, 332, 340, 389, 470, 698, 920
CviQI GTAC 2 cut(s) 45, 695
DdeI CTNAG 1 cut(s) 572
DpnI GATC 4 cut(s) 149, 338, 425, 531
DpnII GATC 4 cut(s) 147, 336, 423, 529
Eam1104I CTCTTC 2 cut(s) 37, 73
EarI CTCTTC 2 cut(s) 37, 73
EciI GGCGGA 2 cut(s) 154, 302
Ecl136II GAGCTC 1 cut(s) 66
Eco130I CCWWGG 1 cut(s) 117
Eco147I AGGCCT 1 cut(s) 91
Eco24I GRGCYC 1 cut(s) 68
Eco47I GGWCC 1 cut(s) 511
Eco47III AGCGCT 1 cut(s) 868
Eco53kI GAGCTC 1 cut(s) 66
EcoICRI GAGCTC 1 cut(s) 66
EcoRII CCWGG 1 cut(s) 397
EcoT14I CCWWGG 1 cut(s) 117
EcoT38I GRGCYC 1 cut(s) 68
ErhI CCWWGG 1 cut(s) 117
FaeI CATG 7 cut(s) 121, 335, 343, 392, 473, 701, 923
FalI AAGNNNNNCTT 4 cut(s) 303, 335, 543, 575
FaqI GGGAC 1 cut(s) 855
FatI CATG 7 cut(s) 117, 331, 339, 388, 469, 697, 919
FbaI TGATCA 1 cut(s) 336
FblI GTMKAC 1 cut(s) 218
Fnu4HI GCNGC 7 cut(s) 24, 154, 285, 369, 372, 577, 865
FokI GGATG 4 cut(s) 251, 602, 695, 887
FriOI GRGCYC 1 cut(s) 68
Fsp4HI GCNGC 7 cut(s) 24, 154, 285, 369, 372, 577, 865
FspBI CTAG 1 cut(s) 465
GlaI GCGC 3 cut(s) 82, 157, 868
GluI GCNGC 7 cut(s) 24, 154, 285, 369, 372, 577, 865
GsaI CCCAGC 2 cut(s) 728, 928
HaeII RGCGCY 1 cut(s) 870
HaeIII GGCC 3 cut(s) 91, 122, 172
HapII CCGG 3 cut(s) 126, 136, 169
HhaI GCGC 3 cut(s) 83, 158, 869
Hin1I GRCGYC 1 cut(s) 906
Hin1II CATG 7 cut(s) 121, 335, 343, 392, 473, 701, 923
Hin6I GCGC 3 cut(s) 81, 156, 867
HinP1I GCGC 3 cut(s) 81, 156, 867
HindIII AAGCTT 1 cut(s) 381
HinfI GANTC 5 cut(s) 129, 230, 640, 772, 932
HpaII CCGG 3 cut(s) 126, 136, 169
HphI GGTGA 3 cut(s) 124, 472, 759
Hpy166II GTNNAC 1 cut(s) 219
Hpy188I TCNGA 5 cut(s) 37, 63, 229, 274, 433
Hpy188III TCNNGA 2 cut(s) 126, 644
Hpy8I GTNNAC 1 cut(s) 219
Hpy99I CGWCG 1 cut(s) 911
HpyAV CCTTC 5 cut(s) 25, 123, 229, 452, 707
HpyCH4III ACNGT 3 cut(s) 802, 859, 943
HpyCH4IV ACGT 3 cut(s) 749, 846, 906
HpyCH4V TGCA 7 cut(s) 177, 296, 371, 388, 409, 579, 602
HpyF10VI GCNNNNNNNGC 8 cut(s) 162, 293, 380, 389, 677, 760, 920, 925
HpyF3I CTNAG 1 cut(s) 572
HpySE526I ACGT 3 cut(s) 749, 846, 906
Hsp92I GRCGYC 1 cut(s) 906
Hsp92II CATG 7 cut(s) 121, 335, 343, 392, 473, 701, 923
HspAI GCGC 3 cut(s) 81, 156, 867
Kpn2I TCCGGA 1 cut(s) 125
Ksp22I TGATCA 1 cut(s) 336
KspI CCGCGG 1 cut(s) 285
Kzo9I GATC 4 cut(s) 147, 336, 423, 529
LguI GCTCTTC 1 cut(s) 73
LmnI GCTCC 2 cut(s) 347, 739
Lsp1109I GCAGC 5 cut(s) 140, 355, 383, 563, 876
MaeI CTAG 1 cut(s) 465
MaeII ACGT 3 cut(s) 749, 846, 906
MaeIII GTNAC 8 cut(s) 256, 446, 478, 607, 745, 778, 796, 853
MalI GATC 4 cut(s) 149, 338, 425, 531
MboI GATC 4 cut(s) 147, 336, 423, 529
MboII GAAGA 4 cut(s) 24, 60, 323, 467
MflI RGATCY 1 cut(s) 529
MhlI GDGCHC 1 cut(s) 68
MluCI AATT 7 cut(s) 72, 96, 262, 427, 436, 661, 686
MlyI GAGTC 1 cut(s) 941
MmeI TCCRAC 2 cut(s) 252, 526
MnlI CCTC 9 cut(s) 133, 410, 493, 549, 579, 643, 730, 813, 878
MroI TCCGGA 1 cut(s) 125
MroXI GAANNNNTTC 1 cut(s) 763
MseI TTAA 2 cut(s) 495, 825
MslI CAYNNNNRTG 1 cut(s) 849
MspA1I CMGCKG 2 cut(s) 153, 284
MspI CCGG 3 cut(s) 126, 136, 169
MspR9I CCNGG 2 cut(s) 136, 399
Mva1269I GAATGC 1 cut(s) 763
MvaI CCWGG 1 cut(s) 399
MvnI CGCG 1 cut(s) 284
MwoI GCNNNNNNNGC 8 cut(s) 162, 293, 380, 389, 677, 760, 920, 925
NciI CCSGG 1 cut(s) 136
NcoI CCATGG 1 cut(s) 117
NdeII GATC 4 cut(s) 147, 336, 423, 529
NheI GCTAGC 1 cut(s) 464
NlaIII CATG 7 cut(s) 121, 335, 343, 392, 473, 701, 923
NmuCI GTSAC 4 cut(s) 478, 607, 745, 796
NspI RCATGY 2 cut(s) 392, 923
NspV TTCGAA 1 cut(s) 233
PaeI GCATGC 2 cut(s) 392, 923
PceI AGGCCT 1 cut(s) 91
PciSI GCTCTTC 1 cut(s) 73
PctI GAATGC 1 cut(s) 763
PdmI GAANNNNTTC 1 cut(s) 763
PfeI GAWTC 4 cut(s) 129, 230, 640, 772
PkrI GCNGC 7 cut(s) 25, 155, 286, 370, 373, 578, 866
PleI GAGTC 1 cut(s) 940
PpsI GAGTC 1 cut(s) 940
Ppu21I YACGTR 1 cut(s) 847
Psp124BI GAGCTC 1 cut(s) 68
Psp6I CCWGG 1 cut(s) 397
PspFI CCCAGC 2 cut(s) 724, 924
PspGI CCWGG 1 cut(s) 397
PspPI GGNCC 1 cut(s) 511
PstI CTGCAG 2 cut(s) 373, 581
PsuI RGATCY 1 cut(s) 529
RsaI GTAC 2 cut(s) 46, 696
RsaNI GTAC 2 cut(s) 45, 695
RseI CAYNNNNRTG 1 cut(s) 849
SacI GAGCTC 1 cut(s) 68
SacII CCGCGG 1 cut(s) 285
SapI GCTCTTC 1 cut(s) 73
SaqAI TTAA 2 cut(s) 495, 825
SatI GCNGC 7 cut(s) 24, 154, 285, 369, 372, 577, 865
Sau3AI GATC 4 cut(s) 147, 336, 423, 529
Sau96I GGNCC 1 cut(s) 511
SchI GAGTC 1 cut(s) 941
ScrFI CCNGG 2 cut(s) 136, 399
SduI GDGCHC 1 cut(s) 68
SfcI CTRYAG 2 cut(s) 369, 577
Sfr303I CCGCGG 1 cut(s) 285
SfuI TTCGAA 1 cut(s) 233
SgrBI CCGCGG 1 cut(s) 285
SinI GGWCC 1 cut(s) 511
SmiMI CAYNNNNRTG 1 cut(s) 849
SphI GCATGC 2 cut(s) 392, 923
Sse9I AATT 7 cut(s) 72, 96, 262, 427, 436, 661, 686
SseBI AGGCCT 1 cut(s) 91
SsiI CCGC 7 cut(s) 24, 139, 151, 282, 284, 287, 680
SspI AATATT 1 cut(s) 657
SspMI CTAG 1 cut(s) 465
SstI GAGCTC 1 cut(s) 68
StuI AGGCCT 1 cut(s) 91
StyD4I CCNGG 2 cut(s) 134, 397
StyI CCWWGG 1 cut(s) 117
TaaI ACNGT 3 cut(s) 802, 859, 943
TaiI ACGT 3 cut(s) 752, 849, 909
TaqI TCGA 2 cut(s) 146, 233
TasI AATT 7 cut(s) 72, 96, 262, 427, 436, 661, 686
TauI GCSGC 2 cut(s) 26, 287
TfiI GAWTC 4 cut(s) 129, 230, 640, 772
Tru1I TTAA 2 cut(s) 495, 825
Tru9I TTAA 2 cut(s) 495, 825
TscAI CASTG 1 cut(s) 637
TseFI GTSAC 4 cut(s) 478, 607, 745, 796
TseI GCWGC 5 cut(s) 153, 368, 371, 576, 864
Tsp45I GTSAC 4 cut(s) 478, 607, 745, 796
TspDTI ATGAA 2 cut(s) 17, 699
TspGWI ACGGA 1 cut(s) 626
TspRI CASTG 1 cut(s) 637
VpaK11BI GGWCC 1 cut(s) 511
XapI RAATTY 3 cut(s) 96, 661, 686
XceI RCATGY 2 cut(s) 392, 923
XcmI CCANNNNNNNNNTGG 1 cut(s) 115
XmiI GTMKAC 1 cut(s) 218
XmnI GAANNNNTTC 1 cut(s) 763
XspI CTAG 1 cut(s) 465
ZraI GACGTC 1 cut(s) 907
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.