Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0000857

Physical Location & Seq

Genomic Coordinates Forward (+)

21507525 .. 21524863

Gene Structure 17339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG227900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGGATATGCATCAATCCCATCATCAGGTGGTTTTCAGGTAGGAGGTGGGATCAATTCAGATAATTCTTTGGAATACATAGAAGAAGGGGCTAGCCACGTCATTGTCACTTCTTATGTATTTAATAATGGGCAAAACCTTGAAAGGCTTAAAGATCTTGTTCTTGTTGTTGGAAAAGAAAGGCTTGTTTTAGACCTTAGCTGTAGAAAGAGGGAAGGTAAATATGCAATTGTCACAGATAGATGGCAAAAGTTCAGTGACGTGTATCTTGACAAGGAAATATTAGACTTCCTTGCCAAGTATGCATATGAGTTTCTGGTACATGGTGTCGATGTGGAAGGGAAAAACCCCTCCTCCTCTTGTCTCACAGCTCGCCTGAGGCTACTGAATGCGATCATGGCCGACGTCGCCACCCTGTCGTGTGCTCGTTGCAGCAAATCCGCCAATCTTCAGTGTCCCAAGTATGTGGAATTGAAGCTTCCTCATGAAGATGCCGCTTTCTGGGCTGTTTGGATATCTCTGGGAGGTAGGCTTGGGTTTGCTTTGGAAGAGGGGAAAGTGAAACAGATTGTTGGGTCGACGCTTTCGGATTCTAAGGAAGATGGGCTGGCTCTGGTTACCAATTTTGTGTCAGATAAGTCGGCGGGGGAGTATGCAAAGATGTATAAGGAAGATGGGCTTACAGGTGGCCATGTGATAATGCTGGGGGCAGATCCTTTGAGTAGAGCTGCTGCCATTGAAGCTCTGCATGCCTATTCTGGTGGTTTGCAAGTGGGAGGTGGGATCAATTCTAATAATTCTTTGCAATACATAGAAGAAGGGGCTAGCCATGTCATTGTCACTTTTTATGTATTTAATAATGGGCAAATGGATCTTGAAAGGCTTAAAGATCTTGTTCATGTTGTTGGAAAAGAGAGGCTTGTTTTAGACCTTAGCTGTAGAAAGAGGTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0000162 GO:0003674 GO:0003824 GO:0003949 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

His_biosynth

Protein Analysis

317

Amino Acids

34.67

Weight (kDa)

5.86

Isoelectric Point (pI)

33.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
His_biosynth	PF00977	12 - 115	3.2e-09	Histidine biosynthesis protein
His_biosynth	PF00977	211 - 315	7.6e-07	Histidine biosynthesis protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000857)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36230
fragaria_vesca	FvH4_6g18790 FvH4_6g18790 FvH4_6g18790 FvH4_6g18790 FvH4_6g18790 FvH4_6g18790
malus_domestica	MD12G1036500.v1.1 MD14G1023300.v1.1
prunus_persica	Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1
pyrus_communis	pycom12g02400 pycom14g02220 pycom14g02230
rosa_chinensis	RchiOBHm_Chr1g0324901 RchiOBHm_Chr1g0350151 RchiOBHm_Chr3g0473801 RchiOBHm_Chr4g0393091 RchiOBHm_Chr4g0409701 RchiOBHm_Chr5g0027171
rosa_laevigata	RLG00000014193 RLG00000023983 RLG00000035737
rosa_multiflora	Rmu_sc0001207.1_g000028 Rmu_sc0002986.1_g000013 Rmu_sc0007035.1_g000005 Rmu_sc0016122.1_g000001 Rmu_sc0037919.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029230 Rroxscaffold_1G00029310 Rroxscaffold_2G00114250 Rroxscaffold_3G00260930 Rroxscaffold_3G00260940 Rroxscaffold_4G00311820 Rroxscaffold_4G00332560 Rroxscaffold_5G00338520 Rroxscaffold_5G00355640 Rroxscaffold_6G00407790
rosa_rugosa	Rorug01G0107500 Rorug02G0045900 Rorug03G0135600 Rorug06G0225600 Rorug07G0319400 Rorug07G0330900
rosa_samantha	Rh1AG080400 Rh1AG119900 Rh1AG120000 Rh1AG233100 Rh1CG115000 Rh1CG217700 Rh2BG241500 Rh2BG353000 Rh2DG556200 Rh3AG186100 Rh3AG202300 Rh3BG214400 Rh3CG211200 Rh3DG210400 Rh3DG227900 Rh5AG343700 Rh5DG191000
rosa_wichuraiana	Rw1G018100 Rw3G017000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	408
AccI	GTMKAC	1 cut(s)	578
AciI	CCGC	3 cut(s)	441, 495, 644
AclWI	GGATC	4 cut(s)	59, 707, 791, 879
AcoI	YGGCCR	2 cut(s)	399, 688
AcuI	CTGAAG	1 cut(s)	434
AcyI	GRCGYC	1 cut(s)	405
AfaI	GTAC	1 cut(s)	321
AfiI	CCNNNNNNNGG	2 cut(s)	26, 501
AflIII	ACRYGT	1 cut(s)	261
AgsI	TTSAA	4 cut(s)	143, 475, 740, 878
AjiI	CACGTC	2 cut(s)	100, 262
AluBI	AGCT	6 cut(s)	201, 371, 478, 728, 743, 936
AluI	AGCT	6 cut(s)	201, 371, 478, 728, 743, 936
Alw21I	GWGCWC	1 cut(s)	427
Alw26I	GTCTC	1 cut(s)	368
AlwI	GGATC	4 cut(s)	59, 707, 791, 879
AoxI	GGCC	2 cut(s)	399, 688
ApeKI	GCWGC	3 cut(s)	432, 728, 731
AsuNHI	GCTAGC	2 cut(s)	92, 824
AxyI	CCTNAGG	1 cut(s)	377
BalI	TGGCCA	1 cut(s)	690
Bbv12I	GWGCWC	1 cut(s)	427
BbvI	GCAGC	3 cut(s)	444, 715, 718
BccI	CCATC	4 cut(s)	28, 237, 596, 668
BcoDI	GTCTC	1 cut(s)	368
BfaI	CTAG	2 cut(s)	93, 825
BfmI	CTRYAG	2 cut(s)	202, 937
BglII	AGATCT	2 cut(s)	154, 889
BisI	GCNGC	4 cut(s)	433, 495, 729, 732
BlsI	GCNGC	4 cut(s)	434, 496, 730, 733
BmgBI	CACGTC	2 cut(s)	100, 262
BmsI	GCATC	2 cut(s)	20, 481
BmtI	GCTAGC	2 cut(s)	96, 828
Bpu10I	CCTNAGC	2 cut(s)	197, 932
BsaBI	GATNNNNATC	1 cut(s)	10
BsaHI	GRCGYC	1 cut(s)	405
BsaXI	ACNNNNNCTCC	2 cut(s)	338, 368
Bsc4I	CCNNNNNNNGG	2 cut(s)	26, 501
Bse21I	CCTNAGG	1 cut(s)	377
Bse8I	GATNNNNATC	1 cut(s)	10
BseJI	GATNNNNATC	1 cut(s)	10
BseLI	CCNNNNNNNGG	2 cut(s)	26, 501
BseMII	CTCAG	1 cut(s)	368
BseRI	GAGGAG	2 cut(s)	343, 346
BseXI	GCAGC	3 cut(s)	444, 715, 718
BseYI	CCCAGC	1 cut(s)	703
BshFI	GGCC	2 cut(s)	401, 690
BsiHKAI	GWGCWC	1 cut(s)	427
BslFI	GGGAC	1 cut(s)	441
BslI	CCNNNNNNNGG	2 cut(s)	26, 501
BsmAI	GTCTC	1 cut(s)	368
BsmFI	GGGAC	1 cut(s)	441
BsmI	GAATGC	1 cut(s)	394
BsnI	GGCC	2 cut(s)	401, 690
Bsp1286I	GDGCHC	1 cut(s)	427
Bsp143I	GATC	7 cut(s)	51, 154, 393, 712, 783, 871, 889
BspACI	CCGC	3 cut(s)	441, 495, 644
BspANI	GGCC	2 cut(s)	401, 690
BspCNI	CTCAG	1 cut(s)	369
BspHI	TCATGA	1 cut(s)	484
BspOI	GCTAGC	2 cut(s)	96, 828
BspPI	GGATC	4 cut(s)	59, 707, 791, 879
BssMI	GATC	7 cut(s)	51, 154, 393, 712, 783, 871, 889
BssNI	GRCGYC	1 cut(s)	405
Bst6I	CTCTTC	1 cut(s)	543
BstACI	GRCGYC	1 cut(s)	405
BstC8I	GCNNGC	5 cut(s)	94, 373, 609, 750, 826
BstDEI	CTNAG	4 cut(s)	197, 377, 594, 932
BstEII	GGTNACC	1 cut(s)	616
BstKTI	GATC	7 cut(s)	54, 157, 396, 715, 786, 874, 892
BstMAI	GTCTC	1 cut(s)	368
BstMBI	GATC	7 cut(s)	51, 154, 393, 712, 783, 871, 889
BstMWI	GCNNNNNNNGC	6 cut(s)	302, 398, 407, 503, 740, 749
BstNSI	RCATGY	1 cut(s)	752
BstPI	GGTNACC	1 cut(s)	616
BstSFI	CTRYAG	2 cut(s)	202, 937
BstV1I	GCAGC	3 cut(s)	444, 715, 718
BstX2I	RGATCY	4 cut(s)	154, 712, 871, 889
BstXI	CCANNNNNNTGG	1 cut(s)	466
BstYI	RGATCY	4 cut(s)	154, 712, 871, 889
Bsu36I	CCTNAGG	1 cut(s)	377
BsuRI	GGCC	2 cut(s)	401, 690
BtrI	CACGTC	2 cut(s)	100, 262
BtsIMutI	CAGTG	2 cut(s)	262, 458
Cac8I	GCNNGC	5 cut(s)	94, 373, 609, 750, 826
CciI	TCATGA	1 cut(s)	484
CseI	GACGC	1 cut(s)	589
Csp6I	GTAC	1 cut(s)	320
CviAII	CATG	7 cut(s)	323, 397, 485, 692, 749, 830, 899
CviQI	GTAC	1 cut(s)	320
DdeI	CTNAG	4 cut(s)	197, 377, 594, 932
DpnI	GATC	7 cut(s)	53, 156, 395, 714, 785, 873, 891
DpnII	GATC	7 cut(s)	51, 154, 393, 712, 783, 871, 889
EaeI	YGGCCR	2 cut(s)	399, 688
Eam1104I	CTCTTC	1 cut(s)	543
EarI	CTCTTC	1 cut(s)	543
EciI	GGCGGA	1 cut(s)	430
Eco32I	GATATC	1 cut(s)	516
Eco57I	CTGAAG	1 cut(s)	434
Eco81I	CCTNAGG	1 cut(s)	377
Eco91I	GGTNACC	1 cut(s)	616
EcoO65I	GGTNACC	1 cut(s)	616
EcoRV	GATATC	1 cut(s)	516
EcoT22I	ATGCAT	2 cut(s)	13, 307
FaeI	CATG	7 cut(s)	326, 400, 488, 695, 752, 833, 902
FalI	AAGNNNNNCTT	6 cut(s)	168, 200, 663, 695, 903, 935
FaqI	GGGAC	1 cut(s)	441
FatI	CATG	7 cut(s)	322, 396, 484, 691, 748, 829, 898
FauI	CCCGC	1 cut(s)	637
FauNDI	CATATG	1 cut(s)	307
FblI	GTMKAC	1 cut(s)	578
Fnu4HI	GCNGC	4 cut(s)	433, 495, 729, 732
Fsp4HI	GCNGC	4 cut(s)	433, 495, 729, 732
FspBI	CTAG	2 cut(s)	93, 825
GluI	GCNGC	4 cut(s)	433, 495, 729, 732
GsaI	CCCAGC	1 cut(s)	707
HaeIII	GGCC	2 cut(s)	401, 690
HgaI	GACGC	1 cut(s)	589
Hin1I	GRCGYC	1 cut(s)	405
Hin1II	CATG	7 cut(s)	326, 400, 488, 695, 752, 833, 902
HincII	GTYRAC	1 cut(s)	579
HindII	GTYRAC	1 cut(s)	579
HindIII	AAGCTT	1 cut(s)	476
HinfI	GANTC	1 cut(s)	590
Hpy166II	GTNNAC	1 cut(s)	579
Hpy188I	TCNGA	3 cut(s)	61, 589, 634
Hpy188III	TCNNGA	3 cut(s)	269, 485, 875
Hpy8I	GTNNAC	1 cut(s)	579
Hpy99I	CGWCG	3 cut(s)	407, 410, 583
HpyAV	CCTTC	4 cut(s)	80, 209, 332, 812
HpyCH4IV	ACGT	3 cut(s)	99, 261, 405
HpyCH4V	TGCA	8 cut(s)	11, 227, 305, 432, 656, 748, 769, 805
HpyF10VI	GCNNNNNNNGC	6 cut(s)	302, 398, 407, 503, 740, 749
HpyF3I	CTNAG	4 cut(s)	197, 377, 594, 932
HpySE526I	ACGT	3 cut(s)	99, 261, 405
Hsp92I	GRCGYC	1 cut(s)	405
Hsp92II	CATG	7 cut(s)	326, 400, 488, 695, 752, 833, 902
Kzo9I	GATC	7 cut(s)	51, 154, 393, 712, 783, 871, 889
Lsp1109I	GCAGC	3 cut(s)	444, 715, 718
LweI	GCATC	2 cut(s)	20, 481
MaeI	CTAG	2 cut(s)	93, 825
MaeII	ACGT	3 cut(s)	99, 261, 405
MaeIII	GTNAC	5 cut(s)	106, 232, 257, 616, 838
MalI	GATC	7 cut(s)	53, 156, 395, 714, 785, 873, 891
MboI	GATC	7 cut(s)	51, 154, 393, 712, 783, 871, 889
MboII	GAAGA	7 cut(s)	95, 440, 500, 560, 611, 683, 827
MfeI	CAATTG	1 cut(s)	228
MflI	RGATCY	4 cut(s)	154, 712, 871, 889
MhlI	GDGCHC	1 cut(s)	427
MlsI	TGGCCA	1 cut(s)	690
MluCI	AATT	7 cut(s)	55, 64, 228, 470, 622, 787, 796
MluNI	TGGCCA	1 cut(s)	690
MmeI	TCCRAC	2 cut(s)	151, 886
Mox20I	TGGCCA	1 cut(s)	690
Mph1103I	ATGCAT	2 cut(s)	13, 307
MscI	TGGCCA	1 cut(s)	690
MseI	TTAA	4 cut(s)	123, 150, 855, 885
MslI	CAYNNNNRTG	1 cut(s)	489
Msp20I	TGGCCA	1 cut(s)	690
MunI	CAATTG	1 cut(s)	228
Mva1269I	GAATGC	1 cut(s)	394
MwoI	GCNNNNNNNGC	6 cut(s)	302, 398, 407, 503, 740, 749
NdeI	CATATG	1 cut(s)	307
NdeII	GATC	7 cut(s)	51, 154, 393, 712, 783, 871, 889
NheI	GCTAGC	2 cut(s)	92, 824
NlaIII	CATG	7 cut(s)	326, 400, 488, 695, 752, 833, 902
NmuCI	GTSAC	4 cut(s)	106, 232, 257, 838
NsiI	ATGCAT	2 cut(s)	13, 307
NspI	RCATGY	1 cut(s)	752
PaeI	GCATGC	1 cut(s)	752
PagI	TCATGA	1 cut(s)	484
PctI	GAATGC	1 cut(s)	394
PfeI	GAWTC	1 cut(s)	590
PkrI	GCNGC	4 cut(s)	434, 496, 730, 733
PspEI	GGTNACC	1 cut(s)	616
PspFI	CCCAGC	1 cut(s)	703
PsuI	RGATCY	4 cut(s)	154, 712, 871, 889
RsaI	GTAC	1 cut(s)	321
RsaNI	GTAC	1 cut(s)	320
RseI	CAYNNNNRTG	1 cut(s)	489
SalI	GTCGAC	1 cut(s)	577
SaqAI	TTAA	4 cut(s)	123, 150, 855, 885
SatI	GCNGC	4 cut(s)	433, 495, 729, 732
Sau3AI	GATC	7 cut(s)	51, 154, 393, 712, 783, 871, 889
SduI	GDGCHC	1 cut(s)	427
SfaNI	GCATC	2 cut(s)	20, 481
SfcI	CTRYAG	2 cut(s)	202, 937
SmiMI	CAYNNNNRTG	1 cut(s)	489
SphI	GCATGC	1 cut(s)	752
Sse9I	AATT	7 cut(s)	55, 64, 228, 470, 622, 787, 796
SsiI	CCGC	3 cut(s)	441, 495, 644
SspI	AATATT	1 cut(s)	282
SspMI	CTAG	2 cut(s)	93, 825
TaiI	ACGT	3 cut(s)	102, 264, 408
TaqI	TCGA	2 cut(s)	330, 578
TasI	AATT	7 cut(s)	55, 64, 228, 470, 622, 787, 796
TauI	GCSGC	1 cut(s)	497
TfiI	GAWTC	1 cut(s)	590
Tru1I	TTAA	4 cut(s)	123, 150, 855, 885
Tru9I	TTAA	4 cut(s)	123, 150, 855, 885
TscAI	CASTG	2 cut(s)	262, 458
TseFI	GTSAC	4 cut(s)	106, 232, 257, 838
TseI	GCWGC	3 cut(s)	432, 728, 731
Tsp45I	GTSAC	4 cut(s)	106, 232, 257, 838
TspDTI	ATGAA	2 cut(s)	501, 887
TspRI	CASTG	2 cut(s)	262, 458
XceI	RCATGY	1 cut(s)	752
XmiI	GTMKAC	1 cut(s)	578
XspI	CTAG	2 cut(s)	93, 825
ZraI	GACGTC	1 cut(s)	406
Zsp2I	ATGCAT	2 cut(s)	13, 307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.