Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000857

Physical Location & Seq

Genomic Coordinates Forward (+)

34402375 .. 34403318

Gene Structure 944 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00311820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGGGATGATCGGGGGAGGAGGAGATCACGAAAATGGGAAGGATCGGCCCATGCATCTCGGCGTCGAGGTTTTCCGCCGGGTCGGGTCGAACGAGTTGTGGCCTTCTTCGATCCAAGCCCGGGAGCAACGGCGGGGCAAGGTGAGGCCGGAGAGCTCGGGGCGGGGTGAGGCGACCTCGGTGGAGCCCGGTCCGGTCTGGAGGAGGCCGGAGGAGGCTAAACAAGTCGGGTCGGGTCGGCTAAGACCCGACGGGTCCGAGGTTTTTCCGAAGGAGGCAATCGTAGTCTACAAGGGCCTATCTCCGGCGACCTTCTTCACGCTCCCGGCTCGCTCTTCGCCGCTTACCATGTCCTTTCGGGCTTTTGGGGCCGTTCGAGACCCACAATCGCCCAGGAGCTTGGAGGAGATGCAACCTCTTCCGCCACCGGTCCGGCTCGACGAGATCACCGCCGAGGAGCTCAAGCGTACGACGGCTAAGATCCCAAGAAGCCTCTCGCTCATGGTCATTAAGTCTCGGATCTATGACGTGTCTCGGAGCAGGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0005488 GO:0005496 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0008150 GO:0008289 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0012505 GO:0016020 GO:0019904 GO:0020037 GO:0030308 GO:0031976 GO:0031984 GO:0034357 GO:0040008 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045926 GO:0046906 GO:0048037 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0055035 GO:0065007 GO:0071944 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyt-b5

Protein Analysis

182

Amino Acids

20.18

Weight (kDa)

10.14

Isoelectric Point (pI)

78.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000857)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36230
fragaria_vesca	FvH4_6g18790 FvH4_6g18790 FvH4_6g18790 FvH4_6g18790 FvH4_6g18790 FvH4_6g18790
malus_domestica	MD12G1036500.v1.1 MD14G1023300.v1.1
prunus_persica	Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1
pyrus_communis	pycom12g02400 pycom14g02220 pycom14g02230
rosa_chinensis	RchiOBHm_Chr1g0324901 RchiOBHm_Chr1g0350151 RchiOBHm_Chr3g0473801 RchiOBHm_Chr4g0393091 RchiOBHm_Chr4g0409701 RchiOBHm_Chr5g0027171
rosa_laevigata	RLG00000014193 RLG00000023983 RLG00000035737
rosa_multiflora	Rmu_sc0001207.1_g000028 Rmu_sc0002986.1_g000013 Rmu_sc0007035.1_g000005 Rmu_sc0016122.1_g000001 Rmu_sc0037919.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029230 Rroxscaffold_1G00029310 Rroxscaffold_2G00114250 Rroxscaffold_3G00260930 Rroxscaffold_3G00260940 Rroxscaffold_4G00311820 Rroxscaffold_4G00332560 Rroxscaffold_5G00338520 Rroxscaffold_5G00355640 Rroxscaffold_6G00407790
rosa_rugosa	Rorug01G0107500 Rorug02G0045900 Rorug03G0135600 Rorug06G0225600 Rorug07G0319400 Rorug07G0330900
rosa_samantha	Rh1AG080400 Rh1AG119900 Rh1AG120000 Rh1AG233100 Rh1CG115000 Rh1CG217700 Rh2BG241500 Rh2BG353000 Rh2DG556200 Rh3AG186100 Rh3AG202300 Rh3BG214400 Rh3CG211200 Rh3DG210400 Rh3DG227900 Rh5AG343700 Rh5DG191000
rosa_wichuraiana	Rw1G018100 Rw3G017000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	531
Acc36I	ACCTGC	1 cut(s)	531
AccI	GTMKAC	1 cut(s)	288
AciI	CCGC	6 cut(s)	76, 133, 163, 341, 422, 450
AclWI	GGATC	4 cut(s)	51, 106, 475, 527
AcyI	GRCGYC	1 cut(s)	63
AfaI	GTAC	1 cut(s)	469
AfiI	CCNNNNNNNGG	2 cut(s)	121, 304
AflIII	ACRYGT	1 cut(s)	528
AgeI	ACCGGT	1 cut(s)	427
AjiI	CACGTC	1 cut(s)	529
AjnI	CCWGG	1 cut(s)	392
AluBI	AGCT	3 cut(s)	156, 399, 460
AluI	AGCT	3 cut(s)	156, 399, 460
Alw21I	GWGCWC	2 cut(s)	158, 462
Alw26I	GTCTC	3 cut(s)	372, 519, 537
AlwI	GGATC	4 cut(s)	51, 106, 475, 527
Ama87I	CYCGRG	2 cut(s)	120, 157
AoxI	GGCC	6 cut(s)	47, 101, 146, 206, 295, 369
AsiGI	ACCGGT	1 cut(s)	427
AspS9I	GGNCC	6 cut(s)	48, 191, 255, 295, 369, 430
AsuC2I	CCSGG	5 cut(s)	80, 121, 122, 189, 326
AsuHPI	GGTGA	3 cut(s)	154, 179, 439
AvaI	CYCGRG	2 cut(s)	120, 157
AvaII	GGWCC	3 cut(s)	191, 255, 430
BanII	GRGCYC	3 cut(s)	158, 189, 462
Bbv12I	GWGCWC	2 cut(s)	158, 462
BceAI	ACGGC	3 cut(s)	146, 356, 489
BciT130I	CCWGG	1 cut(s)	394
BcnI	CCSGG	5 cut(s)	80, 121, 122, 189, 326
BcoDI	GTCTC	3 cut(s)	372, 519, 537
BfuAI	ACCTGC	1 cut(s)	531
BisI	GCNGC	1 cut(s)	341
BlsI	GCNGC	1 cut(s)	342
Bme1390I	CCNGG	6 cut(s)	80, 121, 122, 189, 326, 394
Bme18I	GGWCC	3 cut(s)	191, 255, 430
BmeT110I	CYCGRG	2 cut(s)	120, 157
BmgBI	CACGTC	1 cut(s)	529
BmgT120I	GGNCC	6 cut(s)	48, 191, 255, 295, 369, 430
BmiI	GGNNCC	3 cut(s)	186, 256, 370
BmrFI	CCNGG	6 cut(s)	80, 121, 122, 189, 326, 394
BmsI	GCATC	2 cut(s)	64, 399
BplI	GAGNNNNNCTC	2 cut(s)	161, 193
BpmI	CTGGAG	1 cut(s)	220
BpuEI	CTTGAG	1 cut(s)	446
BpuMI	CCSGG	5 cut(s)	80, 121, 122, 189, 326
BsaHI	GRCGYC	1 cut(s)	63
BsaI	GGTCTC	1 cut(s)	372
BsaJI	CCNNGG	5 cut(s)	120, 177, 258, 392, 453
BsaWI	WCCGGW	2 cut(s)	193, 427
BsaXI	ACNNNNNCTCC	1 cut(s)	529
Bsc4I	CCNNNNNNNGG	2 cut(s)	121, 304
Bse118I	RCCGGY	1 cut(s)	427
BseBI	CCWGG	1 cut(s)	394
BseDI	CCNNGG	5 cut(s)	120, 177, 258, 392, 453
BseGI	GGATG	1 cut(s)	12
BseLI	CCNNNNNNNGG	2 cut(s)	121, 304
BseRI	GAGGAG	6 cut(s)	33, 36, 217, 227, 419, 470
BshFI	GGCC	6 cut(s)	49, 103, 148, 208, 297, 371
BshTI	ACCGGT	1 cut(s)	427
BsiHKAI	GWGCWC	2 cut(s)	158, 462
BsiHKCI	CYCGRG	2 cut(s)	120, 157
BsiWI	CGTACG	1 cut(s)	467
BslI	CCNNNNNNNGG	2 cut(s)	121, 304
BsmAI	GTCTC	3 cut(s)	372, 519, 537
BsnI	GGCC	6 cut(s)	49, 103, 148, 208, 297, 371
Bso31I	GGTCTC	1 cut(s)	372
BsoBI	CYCGRG	2 cut(s)	120, 157
Bsp1286I	GDGCHC	3 cut(s)	158, 189, 462
Bsp143I	GATC	7 cut(s)	9, 25, 43, 111, 444, 480, 519
BspACI	CCGC	6 cut(s)	76, 133, 163, 341, 422, 450
BspANI	GGCC	6 cut(s)	49, 103, 148, 208, 297, 371
BspLI	GGNNCC	3 cut(s)	186, 256, 370
BspMI	ACCTGC	1 cut(s)	531
BspPI	GGATC	4 cut(s)	51, 106, 475, 527
BspQI	GCTCTTC	1 cut(s)	340
BspTNI	GGTCTC	1 cut(s)	372
BsrFI	RCCGGY	1 cut(s)	427
BssAI	RCCGGY	1 cut(s)	427
BssECI	CCNNGG	5 cut(s)	120, 177, 258, 392, 453
BssMI	GATC	7 cut(s)	9, 25, 43, 111, 444, 480, 519
BssNI	GRCGYC	1 cut(s)	63
Bst2UI	CCWGG	1 cut(s)	394
Bst6I	CTCTTC	2 cut(s)	340, 423
BstACI	GRCGYC	1 cut(s)	63
BstC8I	GCNNGC	1 cut(s)	331
BstDEI	CTNAG	2 cut(s)	242, 477
BstF5I	GGATG	1 cut(s)	12
BstKTI	GATC	7 cut(s)	12, 28, 46, 114, 447, 483, 522
BstMAI	GTCTC	3 cut(s)	372, 519, 537
BstMBI	GATC	7 cut(s)	9, 25, 43, 111, 444, 480, 519
BstMWI	GCNNNNNNNGC	1 cut(s)	368
BstNI	CCWGG	1 cut(s)	394
BstSCI	CCNGG	6 cut(s)	78, 119, 120, 187, 324, 392
BstX2I	RGATCY	2 cut(s)	480, 519
BstXI	CCANNNNNNTGG	1 cut(s)	400
BstYI	RGATCY	2 cut(s)	480, 519
BsuRI	GGCC	6 cut(s)	49, 103, 148, 208, 297, 371
BtrI	CACGTC	1 cut(s)	529
BtsCI	GGATG	1 cut(s)	12
BveI	ACCTGC	1 cut(s)	531
Cac8I	GCNNGC	1 cut(s)	331
Cfr10I	RCCGGY	1 cut(s)	427
Cfr13I	GGNCC	6 cut(s)	48, 191, 255, 295, 369, 430
Cfr9I	CCCGGG	1 cut(s)	120
CpoI	CGGWCCG	2 cut(s)	191, 430
CseI	GACGC	1 cut(s)	52
Csp6I	GTAC	1 cut(s)	468
CspAI	ACCGGT	1 cut(s)	427
CspI	CGGWCCG	2 cut(s)	191, 430
CviAII	CATG	3 cut(s)	52, 349, 502
CviQI	GTAC	1 cut(s)	468
DdeI	CTNAG	2 cut(s)	242, 477
DpnI	GATC	7 cut(s)	11, 27, 45, 113, 446, 482, 521
DpnII	GATC	7 cut(s)	9, 25, 43, 111, 444, 480, 519
Eam1104I	CTCTTC	2 cut(s)	340, 423
EarI	CTCTTC	2 cut(s)	340, 423
EciI	GGCGGA	2 cut(s)	65, 411
Ecl136II	GAGCTC	2 cut(s)	156, 460
Eco24I	GRGCYC	3 cut(s)	158, 189, 462
Eco31I	GGTCTC	1 cut(s)	372
Eco47I	GGWCC	3 cut(s)	191, 255, 430
Eco53kI	GAGCTC	2 cut(s)	156, 460
Eco88I	CYCGRG	2 cut(s)	120, 157
EcoICRI	GAGCTC	2 cut(s)	156, 460
EcoO109I	RGGNCCY	1 cut(s)	295
EcoRII	CCWGG	1 cut(s)	392
EcoT22I	ATGCAT	1 cut(s)	57
EcoT38I	GRGCYC	3 cut(s)	158, 189, 462
FaeI	CATG	3 cut(s)	55, 352, 505
FaiI	YATR	4 cut(s)	53, 350, 503, 525
FatI	CATG	3 cut(s)	51, 348, 501
FauI	CCCGC	2 cut(s)	126, 156
FblI	GTMKAC	1 cut(s)	288
Fnu4HI	GCNGC	1 cut(s)	341
FokI	GGATG	1 cut(s)	19
FriOI	GRGCYC	3 cut(s)	158, 189, 462
Fsp4HI	GCNGC	1 cut(s)	341
GluI	GCNGC	1 cut(s)	341
GsuI	CTGGAG	1 cut(s)	220
HaeIII	GGCC	6 cut(s)	49, 103, 148, 208, 297, 371
HgaI	GACGC	1 cut(s)	52
Hin1I	GRCGYC	1 cut(s)	63
Hin1II	CATG	3 cut(s)	55, 352, 505
HphI	GGTGA	3 cut(s)	154, 179, 439
Hpy166II	GTNNAC	1 cut(s)	289
Hpy188I	TCNGA	4 cut(s)	259, 270, 519, 537
Hpy188III	TCNNGA	3 cut(s)	29, 199, 377
Hpy8I	GTNNAC	1 cut(s)	289
Hpy99I	CGWCG	4 cut(s)	68, 254, 443, 475
HpyAV	CCTTC	4 cut(s)	34, 114, 265, 322
HpyCH4IV	ACGT	1 cut(s)	528
HpyCH4V	TGCA	2 cut(s)	55, 412
HpyF10VI	GCNNNNNNNGC	1 cut(s)	368
HpyF3I	CTNAG	2 cut(s)	242, 477
HpySE526I	ACGT	1 cut(s)	528
Hsp92I	GRCGYC	1 cut(s)	63
Hsp92II	CATG	3 cut(s)	55, 352, 505
Kzo9I	GATC	7 cut(s)	9, 25, 43, 111, 444, 480, 519
LguI	GCTCTTC	1 cut(s)	340
LmnI	GCTCC	6 cut(s)	124, 184, 327, 396, 457, 537
LweI	GCATC	2 cut(s)	64, 399
MaeII	ACGT	1 cut(s)	528
MalI	GATC	7 cut(s)	11, 27, 45, 113, 446, 482, 521
MboI	GATC	7 cut(s)	9, 25, 43, 111, 444, 480, 519
MboII	GAAGA	4 cut(s)	99, 307, 327, 410
MflI	RGATCY	2 cut(s)	480, 519
MhlI	GDGCHC	3 cut(s)	158, 189, 462
Mph1103I	ATGCAT	1 cut(s)	57
MseI	TTAA	1 cut(s)	510
MslI	CAYNNNNRTG	1 cut(s)	33
MspR9I	CCNGG	6 cut(s)	80, 121, 122, 189, 326, 394
MvaI	CCWGG	1 cut(s)	394
MwoI	GCNNNNNNNGC	1 cut(s)	368
NciI	CCSGG	5 cut(s)	80, 121, 122, 189, 326
NdeII	GATC	7 cut(s)	9, 25, 43, 111, 444, 480, 519
NlaIII	CATG	3 cut(s)	55, 352, 505
NlaIV	GGNNCC	3 cut(s)	186, 256, 370
NmeAIII	GCCGAG	2 cut(s)	39, 478
NsiI	ATGCAT	1 cut(s)	57
PaqCI	CACCTGC	1 cut(s)	531
PciSI	GCTCTTC	1 cut(s)	340
PcsI	WCGNNNNNNNCGW	1 cut(s)	90
Pfl23II	CGTACG	1 cut(s)	467
PinAI	ACCGGT	1 cut(s)	427
PkrI	GCNGC	1 cut(s)	342
Psp124BI	GAGCTC	2 cut(s)	158, 462
Psp6I	CCWGG	1 cut(s)	392
PspGI	CCWGG	1 cut(s)	392
PspLI	CGTACG	1 cut(s)	467
PspN4I	GGNNCC	3 cut(s)	186, 256, 370
PspPI	GGNCC	6 cut(s)	48, 191, 255, 295, 369, 430
PsuI	RGATCY	2 cut(s)	480, 519
RsaI	GTAC	1 cut(s)	469
RsaNI	GTAC	1 cut(s)	468
RseI	CAYNNNNRTG	1 cut(s)	33
Rsr2I	CGGWCCG	2 cut(s)	191, 430
RsrII	CGGWCCG	2 cut(s)	191, 430
SacI	GAGCTC	2 cut(s)	158, 462
SapI	GCTCTTC	1 cut(s)	340
SaqAI	TTAA	1 cut(s)	510
SatI	GCNGC	1 cut(s)	341
Sau3AI	GATC	7 cut(s)	9, 25, 43, 111, 444, 480, 519
Sau96I	GGNCC	6 cut(s)	48, 191, 255, 295, 369, 430
ScrFI	CCNGG	6 cut(s)	80, 121, 122, 189, 326, 394
SduI	GDGCHC	3 cut(s)	158, 189, 462
SfaNI	GCATC	2 cut(s)	64, 399
SinI	GGWCC	3 cut(s)	191, 255, 430
SmaI	CCCGGG	1 cut(s)	122
SmiMI	CAYNNNNRTG	1 cut(s)	33
SmlI	CTYRAG	1 cut(s)	461
SmoI	CTYRAG	1 cut(s)	461
SsiI	CCGC	6 cut(s)	76, 133, 163, 341, 422, 450
SstI	GAGCTC	2 cut(s)	158, 462
StyD4I	CCNGG	6 cut(s)	78, 119, 120, 187, 324, 392
TaiI	ACGT	1 cut(s)	531
TaqI	TCGA	5 cut(s)	66, 89, 110, 376, 438
TauI	GCSGC	1 cut(s)	343
Tru1I	TTAA	1 cut(s)	510
Tru9I	TTAA	1 cut(s)	510
TspMI	CCCGGG	1 cut(s)	120
VpaK11BI	GGWCC	3 cut(s)	191, 255, 430
XmaI	CCCGGG	1 cut(s)	120
XmiI	GTMKAC	1 cut(s)	288
Zsp2I	ATGCAT	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.