Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002986.1

Orthogroup ID

OG0000857

Physical Location & Seq

Genomic Coordinates Reverse (-)

58699 .. 59285

Gene Structure 587 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002986.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

atgcttttgagattggacagtctcggtaaaaagaagtttgatgggtctaggccatctgcaacgttcagtaagtttctgcttccgtttttggggaaagtgaaacagattgttgggtcgacgctttcggattctaaggaagatgggctggctctggttaccaattttgtgtcagataagtcggcgggggagtatgcaaagatgtataaggaagatgggcttacaggtggccatgtgataatgctgggggcagatcctttgagtagagctgctgccattgaagctctgcatgcctattctggtgggtcaatagctagatgccttcttattgttgtgattcttttgcttttttatactttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0000162 GO:0003674 GO:0003824 GO:0003949 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

His_biosynth

Protein Analysis

119

Amino Acids

12.77

Weight (kDa)

9.07

Isoelectric Point (pI)

39.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000857)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36230
fragaria_vesca	FvH4_6g18790 FvH4_6g18790 FvH4_6g18790 FvH4_6g18790 FvH4_6g18790 FvH4_6g18790
malus_domestica	MD12G1036500.v1.1 MD14G1023300.v1.1
prunus_persica	Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1
pyrus_communis	pycom12g02400 pycom14g02220 pycom14g02230
rosa_chinensis	RchiOBHm_Chr1g0324901 RchiOBHm_Chr1g0350151 RchiOBHm_Chr3g0473801 RchiOBHm_Chr4g0393091 RchiOBHm_Chr4g0409701 RchiOBHm_Chr5g0027171
rosa_laevigata	RLG00000014193 RLG00000023983 RLG00000035737
rosa_multiflora	Rmu_sc0001207.1_g000028 Rmu_sc0002986.1_g000013 Rmu_sc0007035.1_g000005 Rmu_sc0016122.1_g000001 Rmu_sc0037919.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029230 Rroxscaffold_1G00029310 Rroxscaffold_2G00114250 Rroxscaffold_3G00260930 Rroxscaffold_3G00260940 Rroxscaffold_4G00311820 Rroxscaffold_4G00332560 Rroxscaffold_5G00338520 Rroxscaffold_5G00355640 Rroxscaffold_6G00407790
rosa_rugosa	Rorug01G0107500 Rorug02G0045900 Rorug03G0135600 Rorug06G0225600 Rorug07G0319400 Rorug07G0330900
rosa_samantha	Rh1AG080400 Rh1AG119900 Rh1AG120000 Rh1AG233100 Rh1CG115000 Rh1CG217700 Rh2BG241500 Rh2BG353000 Rh2DG556200 Rh3AG186100 Rh3AG202300 Rh3BG214400 Rh3CG211200 Rh3DG210400 Rh3DG227900 Rh5AG343700 Rh5DG191000
rosa_wichuraiana	Rw1G018100 Rw3G017000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	116
AciI	CCGC	1 cut(s)	182
AclI	AACGTT	1 cut(s)	62
AclWI	GGATC	1 cut(s)	245
AcoI	YGGCCR	1 cut(s)	226
AfiI	CCNNNNNNNGG	1 cut(s)	89
AgsI	TTSAA	1 cut(s)	278
AluBI	AGCT	3 cut(s)	266, 281, 311
AluI	AGCT	3 cut(s)	266, 281, 311
Alw26I	GTCTC	1 cut(s)	26
AlwI	GGATC	1 cut(s)	245
AoxI	GGCC	2 cut(s)	50, 226
ApeKI	GCWGC	2 cut(s)	266, 269
BalI	TGGCCA	1 cut(s)	228
BbvI	GCAGC	2 cut(s)	253, 256
BccI	CCATC	4 cut(s)	35, 61, 134, 206
BcoDI	GTCTC	1 cut(s)	26
BfaI	CTAG	2 cut(s)	48, 312
BisI	GCNGC	2 cut(s)	267, 270
BlsI	GCNGC	2 cut(s)	268, 271
BmsI	GCATC	1 cut(s)	305
Bsc4I	CCNNNNNNNGG	1 cut(s)	89
BseLI	CCNNNNNNNGG	1 cut(s)	89
BseXI	GCAGC	2 cut(s)	253, 256
BseYI	CCCAGC	1 cut(s)	241
BshFI	GGCC	2 cut(s)	52, 228
BslI	CCNNNNNNNGG	1 cut(s)	89
BsmAI	GTCTC	1 cut(s)	26
BsnI	GGCC	2 cut(s)	52, 228
Bsp143I	GATC	1 cut(s)	250
BspACI	CCGC	1 cut(s)	182
BspANI	GGCC	2 cut(s)	52, 228
BspPI	GGATC	1 cut(s)	245
BssMI	GATC	1 cut(s)	250
Bst4CI	ACNGT	1 cut(s)	20
BstC8I	GCNNGC	2 cut(s)	147, 288
BstDEI	CTNAG	1 cut(s)	132
BstEII	GGTNACC	1 cut(s)	154
BstKTI	GATC	1 cut(s)	253
BstMAI	GTCTC	1 cut(s)	26
BstMBI	GATC	1 cut(s)	250
BstMWI	GCNNNNNNNGC	2 cut(s)	278, 287
BstNSI	RCATGY	1 cut(s)	290
BstPI	GGTNACC	1 cut(s)	154
BstV1I	GCAGC	2 cut(s)	253, 256
BstX2I	RGATCY	1 cut(s)	250
BstYI	RGATCY	1 cut(s)	250
BsuRI	GGCC	2 cut(s)	52, 228
Cac8I	GCNNGC	2 cut(s)	147, 288
CseI	GACGC	1 cut(s)	127
CviAII	CATG	2 cut(s)	230, 287
CviJI	RGCY	8 cut(s)	52, 145, 149, 217, 228, 266, 281, 311
CviKI_1	RGCY	8 cut(s)	52, 145, 149, 217, 228, 266, 281, 311
DdeI	CTNAG	1 cut(s)	132
DpnI	GATC	1 cut(s)	252
DpnII	GATC	1 cut(s)	250
EaeI	YGGCCR	1 cut(s)	226
Eco91I	GGTNACC	1 cut(s)	154
EcoO65I	GGTNACC	1 cut(s)	154
FaeI	CATG	2 cut(s)	233, 290
FaiI	YATR	5 cut(s)	192, 204, 231, 288, 351
FalI	AAGNNNNNCTT	2 cut(s)	201, 233
FatI	CATG	2 cut(s)	229, 286
FauI	CCCGC	1 cut(s)	175
FblI	GTMKAC	1 cut(s)	116
Fnu4HI	GCNGC	2 cut(s)	267, 270
Fsp4HI	GCNGC	2 cut(s)	267, 270
FspBI	CTAG	2 cut(s)	48, 312
GluI	GCNGC	2 cut(s)	267, 270
GsaI	CCCAGC	1 cut(s)	245
HaeIII	GGCC	2 cut(s)	52, 228
HgaI	GACGC	1 cut(s)	127
Hin1II	CATG	2 cut(s)	233, 290
HincII	GTYRAC	1 cut(s)	117
HindII	GTYRAC	1 cut(s)	117
HinfI	GANTC	2 cut(s)	128, 334
Hpy166II	GTNNAC	1 cut(s)	117
Hpy188I	TCNGA	2 cut(s)	127, 172
Hpy8I	GTNNAC	1 cut(s)	117
Hpy99I	CGWCG	1 cut(s)	121
HpyAV	CCTTC	1 cut(s)	329
HpyCH4III	ACNGT	1 cut(s)	20
HpyCH4IV	ACGT	1 cut(s)	62
HpyCH4V	TGCA	3 cut(s)	59, 194, 286
HpyF10VI	GCNNNNNNNGC	2 cut(s)	278, 287
HpyF3I	CTNAG	1 cut(s)	132
HpySE526I	ACGT	1 cut(s)	62
Hsp92II	CATG	2 cut(s)	233, 290
Kzo9I	GATC	1 cut(s)	250
LpnPI	CCDG	5 cut(s)	131, 137, 207, 227, 282
Lsp1109I	GCAGC	2 cut(s)	253, 256
LweI	GCATC	1 cut(s)	305
MaeI	CTAG	2 cut(s)	48, 312
MaeII	ACGT	1 cut(s)	62
MaeIII	GTNAC	1 cut(s)	154
MalI	GATC	1 cut(s)	252
MboI	GATC	1 cut(s)	250
MboII	GAAGA	2 cut(s)	149, 221
MflI	RGATCY	1 cut(s)	250
MlsI	TGGCCA	1 cut(s)	228
MluCI	AATT	1 cut(s)	160
MluNI	TGGCCA	1 cut(s)	228
Mox20I	TGGCCA	1 cut(s)	228
MscI	TGGCCA	1 cut(s)	228
MseI	TTAA	1 cut(s)	358
Msp20I	TGGCCA	1 cut(s)	228
MwoI	GCNNNNNNNGC	2 cut(s)	278, 287
NdeII	GATC	1 cut(s)	250
NlaIII	CATG	2 cut(s)	233, 290
NspI	RCATGY	1 cut(s)	290
PaeI	GCATGC	1 cut(s)	290
PfeI	GAWTC	2 cut(s)	128, 334
PkrI	GCNGC	2 cut(s)	268, 271
Psp1406I	AACGTT	1 cut(s)	62
PspEI	GGTNACC	1 cut(s)	154
PspFI	CCCAGC	1 cut(s)	241
PsuI	RGATCY	1 cut(s)	250
SalI	GTCGAC	1 cut(s)	115
SaqAI	TTAA	1 cut(s)	358
SatI	GCNGC	2 cut(s)	267, 270
Sau3AI	GATC	1 cut(s)	250
SetI	ASST	5 cut(s)	65, 226, 268, 283, 313
SfaNI	GCATC	1 cut(s)	305
SphI	GCATGC	1 cut(s)	290
Sse9I	AATT	1 cut(s)	160
SsiI	CCGC	1 cut(s)	182
SspMI	CTAG	2 cut(s)	48, 312
TaaI	ACNGT	1 cut(s)	20
TaiI	ACGT	1 cut(s)	65
TaqI	TCGA	1 cut(s)	116
TasI	AATT	1 cut(s)	160
TfiI	GAWTC	2 cut(s)	128, 334
Tru1I	TTAA	1 cut(s)	358
Tru9I	TTAA	1 cut(s)	358
TseI	GCWGC	2 cut(s)	266, 269
TspGWI	ACGGA	1 cut(s)	72
XceI	RCATGY	1 cut(s)	290
XmiI	GTMKAC	1 cut(s)	116
XspI	CTAG	2 cut(s)	48, 312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.