Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0000857

Physical Location & Seq

Genomic Coordinates Forward (+)

19345885 .. 19352193

Gene Structure 6309 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG214400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGTATAAGGAAGATGGGCTTCCAGGTGGCCATGTGATAATGCTGGGAGCAGACCCTTTGAGTAGAGCTGCGGCCATTGAAGCTCTGCATGCCTATCCTGGTGGTTTGCAAGTAGGAGGTGGGATCAATTCAGATAATTCTTTGCAGTACATAGAAGAAGGGGCTAGCCATGTCATTGTCACTTCTTATGTATTTAATAATGGGCAAATGGACCTTGAAAGGCTTAAAGATCTTGTTCGTGTTGTTGGAAAAGAAAGGCTTGTTTTAGACCTTAGCTGCAGAAAGAGGGAAGGTAAATATGCAATTGTCACCGATAGATGGCAAAAGTTCAGTGATGTATATCTTGACAAGAAAATATTAGACTTCCTTGCCAAGTATGCAGACGAGTTTCTGGTACATGGTGTCGATGTTGAAGGGAAAAAACTGGGGATTGATGAAGAGCTTGTGGAGTTGCTTGGCAAACATTCTCCGATTCCTGTAACTTATGCTGGTGGTGTCACAGTAATGGCTGATTTGGAGAGGATAAAAGTGGCAGGGCTAGGACATGTGGATGTTTCCGTCGGCAGCGCTTTGGATGTTTTCGGGGGCAACTTGCCGTACGAAGAAGTCGTTGCTTGGCATACTCAGCAGGAAGCACTGACTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0000162 GO:0003674 GO:0003824 GO:0003949 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

His_biosynth

Protein Analysis

215

Amino Acids

23.45

Weight (kDa)

5.05

Isoelectric Point (pI)

30.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
His_biosynth	PF00977	2 - 191	3.1e-23	Histidine biosynthesis protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000857)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36230
fragaria_vesca	FvH4_6g18790 FvH4_6g18790 FvH4_6g18790 FvH4_6g18790 FvH4_6g18790 FvH4_6g18790
malus_domestica	MD12G1036500.v1.1 MD14G1023300.v1.1
prunus_persica	Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1
pyrus_communis	pycom12g02400 pycom14g02220 pycom14g02230
rosa_chinensis	RchiOBHm_Chr1g0324901 RchiOBHm_Chr1g0350151 RchiOBHm_Chr3g0473801 RchiOBHm_Chr4g0393091 RchiOBHm_Chr4g0409701 RchiOBHm_Chr5g0027171
rosa_laevigata	RLG00000014193 RLG00000023983 RLG00000035737
rosa_multiflora	Rmu_sc0001207.1_g000028 Rmu_sc0002986.1_g000013 Rmu_sc0007035.1_g000005 Rmu_sc0016122.1_g000001 Rmu_sc0037919.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029230 Rroxscaffold_1G00029310 Rroxscaffold_2G00114250 Rroxscaffold_3G00260930 Rroxscaffold_3G00260940 Rroxscaffold_4G00311820 Rroxscaffold_4G00332560 Rroxscaffold_5G00338520 Rroxscaffold_5G00355640 Rroxscaffold_6G00407790
rosa_rugosa	Rorug01G0107500 Rorug02G0045900 Rorug03G0135600 Rorug06G0225600 Rorug07G0319400 Rorug07G0330900
rosa_samantha	Rh1AG080400 Rh1AG119900 Rh1AG120000 Rh1AG233100 Rh1CG115000 Rh1CG217700 Rh2BG241500 Rh2BG353000 Rh2DG556200 Rh3AG186100 Rh3AG202300 Rh3BG214400 Rh3CG211200 Rh3DG210400 Rh3DG227900 Rh5AG343700 Rh5DG191000
rosa_wichuraiana	Rw1G018100 Rw3G017000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	71
AclWI	GGATC	1 cut(s)	131
AcoI	YGGCCR	2 cut(s)	28, 72
AfaI	GTAC	3 cut(s)	149, 396, 599
AfeI	AGCGCT	1 cut(s)	568
AfiI	CCNNNNNNNGG	1 cut(s)	318
AflIII	ACRYGT	1 cut(s)	544
AgsI	TTSAA	3 cut(s)	80, 218, 413
AjnI	CCWGG	2 cut(s)	22, 97
AluBI	AGCT	4 cut(s)	68, 83, 276, 442
AluI	AGCT	4 cut(s)	68, 83, 276, 442
AlwI	GGATC	1 cut(s)	131
Aor51HI	AGCGCT	1 cut(s)	568
AoxI	GGCC	2 cut(s)	28, 72
ApeKI	GCWGC	3 cut(s)	68, 276, 564
AspLEI	GCGC	1 cut(s)	569
AspS9I	GGNCC	1 cut(s)	211
AsuHPI	GGTGA	1 cut(s)	301
AsuNHI	GCTAGC	1 cut(s)	164
AvaII	GGWCC	1 cut(s)	211
BalI	TGGCCA	1 cut(s)	30
BbvI	GCAGC	3 cut(s)	55, 263, 576
BccI	CCATC	2 cut(s)	8, 312
BceAI	ACGGC	1 cut(s)	580
BciT130I	CCWGG	2 cut(s)	24, 99
BfaI	CTAG	2 cut(s)	165, 539
BfmI	CTRYAG	1 cut(s)	277
BfoI	RGCGCY	1 cut(s)	570
BglII	AGATCT	1 cut(s)	229
BisI	GCNGC	4 cut(s)	69, 72, 277, 565
BlsI	GCNGC	4 cut(s)	70, 73, 278, 566
Bme1390I	CCNGG	2 cut(s)	24, 99
Bme18I	GGWCC	1 cut(s)	211
BmgT120I	GGNCC	1 cut(s)	211
BmrFI	CCNGG	2 cut(s)	24, 99
BmrI	ACTGGG	1 cut(s)	434
BmtI	GCTAGC	1 cut(s)	168
BmuI	ACTGGG	1 cut(s)	434
Bpu10I	CCTNAGC	1 cut(s)	272
BsaBI	GATNNNNATC	1 cut(s)	339
Bsc4I	CCNNNNNNNGG	1 cut(s)	318
Bse1I	ACTGG	1 cut(s)	429
Bse8I	GATNNNNATC	1 cut(s)	339
BseBI	CCWGG	2 cut(s)	24, 99
BseGI	GGATG	2 cut(s)	556, 580
BseJI	GATNNNNATC	1 cut(s)	339
BseLI	CCNNNNNNNGG	1 cut(s)	318
BseMII	CTCAG	1 cut(s)	638
BseNI	ACTGG	1 cut(s)	429
BseXI	GCAGC	3 cut(s)	55, 263, 576
BseYI	CCCAGC	1 cut(s)	43
BshFI	GGCC	2 cut(s)	30, 74
BsiWI	CGTACG	1 cut(s)	597
BslI	CCNNNNNNNGG	1 cut(s)	318
BsnI	GGCC	2 cut(s)	30, 74
Bsp143I	GATC	2 cut(s)	123, 229
BspACI	CCGC	1 cut(s)	71
BspANI	GGCC	2 cut(s)	30, 74
BspCNI	CTCAG	1 cut(s)	637
BspMAI	CTGCAG	1 cut(s)	281
BspOI	GCTAGC	1 cut(s)	168
BspPI	GGATC	1 cut(s)	131
BspQI	GCTCTTC	1 cut(s)	432
BsrI	ACTGG	1 cut(s)	429
BssMI	GATC	2 cut(s)	123, 229
Bst2UI	CCWGG	2 cut(s)	24, 99
Bst4CI	ACNGT	2 cut(s)	502, 643
Bst6I	CTCTTC	1 cut(s)	432
BstC8I	GCNNGC	2 cut(s)	90, 166
BstDEI	CTNAG	2 cut(s)	272, 624
BstF5I	GGATG	2 cut(s)	556, 580
BstH2I	RGCGCY	1 cut(s)	570
BstHHI	GCGC	1 cut(s)	569
BstKTI	GATC	2 cut(s)	126, 232
BstMBI	GATC	2 cut(s)	123, 229
BstMWI	GCNNNNNNNGC	4 cut(s)	80, 89, 377, 625
BstNI	CCWGG	2 cut(s)	24, 99
BstNSI	RCATGY	2 cut(s)	92, 548
BstSCI	CCNGG	2 cut(s)	22, 97
BstSFI	CTRYAG	1 cut(s)	277
BstV1I	GCAGC	3 cut(s)	55, 263, 576
BstX2I	RGATCY	1 cut(s)	229
BstYI	RGATCY	1 cut(s)	229
BsuRI	GGCC	2 cut(s)	30, 74
BtsCI	GGATG	2 cut(s)	556, 580
BtsIMutI	CAGTG	2 cut(s)	337, 635
Cac8I	GCNNGC	2 cut(s)	90, 166
CfoI	GCGC	1 cut(s)	569
Cfr13I	GGNCC	1 cut(s)	211
Csp6I	GTAC	3 cut(s)	148, 395, 598
CviAII	CATG	5 cut(s)	32, 89, 170, 398, 545
CviQI	GTAC	3 cut(s)	148, 395, 598
DdeI	CTNAG	2 cut(s)	272, 624
DpnI	GATC	2 cut(s)	125, 231
DpnII	GATC	2 cut(s)	123, 229
EaeI	YGGCCR	2 cut(s)	28, 72
Eam1104I	CTCTTC	1 cut(s)	432
EarI	CTCTTC	1 cut(s)	432
Eco47I	GGWCC	1 cut(s)	211
Eco47III	AGCGCT	1 cut(s)	568
EcoRII	CCWGG	2 cut(s)	22, 97
FaeI	CATG	5 cut(s)	35, 92, 173, 401, 548
FalI	AAGNNNNNCTT	3 cut(s)	35, 243, 275
FatI	CATG	5 cut(s)	31, 88, 169, 397, 544
Fnu4HI	GCNGC	4 cut(s)	69, 72, 277, 565
FokI	GGATG	2 cut(s)	563, 587
Fsp4HI	GCNGC	4 cut(s)	69, 72, 277, 565
FspBI	CTAG	2 cut(s)	165, 539
GlaI	GCGC	1 cut(s)	568
GluI	GCNGC	4 cut(s)	69, 72, 277, 565
GsaI	CCCAGC	1 cut(s)	47
HaeII	RGCGCY	1 cut(s)	570
HaeIII	GGCC	2 cut(s)	30, 74
HhaI	GCGC	1 cut(s)	569
Hin1II	CATG	5 cut(s)	35, 92, 173, 401, 548
Hin6I	GCGC	1 cut(s)	567
HinP1I	GCGC	1 cut(s)	567
HinfI	GANTC	1 cut(s)	472
HphI	GGTGA	1 cut(s)	301
Hpy188I	TCNGA	2 cut(s)	133, 471
Hpy188III	TCNNGA	1 cut(s)	344
Hpy99I	CGWCG	1 cut(s)	563
HpyAV	CCTTC	3 cut(s)	152, 284, 407
HpyCH4III	ACNGT	2 cut(s)	502, 643
HpyCH4V	TGCA	6 cut(s)	88, 109, 145, 279, 302, 380
HpyF10VI	GCNNNNNNNGC	4 cut(s)	80, 89, 377, 625
HpyF3I	CTNAG	2 cut(s)	272, 624
Hsp92II	CATG	5 cut(s)	35, 92, 173, 401, 548
HspAI	GCGC	1 cut(s)	567
Kzo9I	GATC	2 cut(s)	123, 229
LguI	GCTCTTC	1 cut(s)	432
LmnI	GCTCC	1 cut(s)	47
Lsp1109I	GCAGC	3 cut(s)	55, 263, 576
MaeI	CTAG	2 cut(s)	165, 539
MaeIII	GTNAC	4 cut(s)	178, 307, 478, 496
MalI	GATC	2 cut(s)	125, 231
MboI	GATC	2 cut(s)	123, 229
MboII	GAAGA	4 cut(s)	23, 167, 449, 614
MfeI	CAATTG	1 cut(s)	303
MflI	RGATCY	1 cut(s)	229
MlsI	TGGCCA	1 cut(s)	30
MluCI	AATT	3 cut(s)	127, 136, 303
MluNI	TGGCCA	1 cut(s)	30
MmeI	TCCRAC	1 cut(s)	226
MnlI	CCTC	3 cut(s)	110, 279, 513
Mox20I	TGGCCA	1 cut(s)	30
MscI	TGGCCA	1 cut(s)	30
MseI	TTAA	2 cut(s)	195, 225
MslI	CAYNNNNRTG	2 cut(s)	503, 549
Msp20I	TGGCCA	1 cut(s)	30
MspR9I	CCNGG	2 cut(s)	24, 99
MunI	CAATTG	1 cut(s)	303
MvaI	CCWGG	2 cut(s)	24, 99
MwoI	GCNNNNNNNGC	4 cut(s)	80, 89, 377, 625
NdeII	GATC	2 cut(s)	123, 229
NheI	GCTAGC	1 cut(s)	164
NlaIII	CATG	5 cut(s)	35, 92, 173, 401, 548
NmuCI	GTSAC	3 cut(s)	178, 307, 496
NspI	RCATGY	2 cut(s)	92, 548
PaeI	GCATGC	1 cut(s)	92
PciI	ACATGT	1 cut(s)	544
PciSI	GCTCTTC	1 cut(s)	432
PcsI	WCGNNNNNNNCGW	1 cut(s)	606
PfeI	GAWTC	1 cut(s)	472
Pfl23II	CGTACG	1 cut(s)	597
PkrI	GCNGC	4 cut(s)	70, 73, 278, 566
PscI	ACATGT	1 cut(s)	544
Psp6I	CCWGG	2 cut(s)	22, 97
PspFI	CCCAGC	1 cut(s)	43
PspGI	CCWGG	2 cut(s)	22, 97
PspLI	CGTACG	1 cut(s)	597
PspPI	GGNCC	1 cut(s)	211
PstI	CTGCAG	1 cut(s)	281
PsuI	RGATCY	1 cut(s)	229
RsaI	GTAC	3 cut(s)	149, 396, 599
RsaNI	GTAC	3 cut(s)	148, 395, 598
RseI	CAYNNNNRTG	2 cut(s)	503, 549
SapI	GCTCTTC	1 cut(s)	432
SaqAI	TTAA	2 cut(s)	195, 225
SatI	GCNGC	4 cut(s)	69, 72, 277, 565
Sau3AI	GATC	2 cut(s)	123, 229
Sau96I	GGNCC	1 cut(s)	211
ScrFI	CCNGG	2 cut(s)	24, 99
SetI	ASST	9 cut(s)	28, 70, 85, 121, 216, 273, 278, 295, 444
SfcI	CTRYAG	1 cut(s)	277
SinI	GGWCC	1 cut(s)	211
SmiMI	CAYNNNNRTG	2 cut(s)	503, 549
SphI	GCATGC	1 cut(s)	92
Sse9I	AATT	3 cut(s)	127, 136, 303
SsiI	CCGC	1 cut(s)	71
SspI	AATATT	1 cut(s)	357
SspMI	CTAG	2 cut(s)	165, 539
StyD4I	CCNGG	2 cut(s)	22, 97
TaaI	ACNGT	2 cut(s)	502, 643
TaqI	TCGA	1 cut(s)	405
TasI	AATT	3 cut(s)	127, 136, 303
TatI	WGTACW	1 cut(s)	147
TauI	GCSGC	1 cut(s)	74
TfiI	GAWTC	1 cut(s)	472
Tru1I	TTAA	2 cut(s)	195, 225
Tru9I	TTAA	2 cut(s)	195, 225
TscAI	CASTG	2 cut(s)	337, 642
TseFI	GTSAC	3 cut(s)	178, 307, 496
TseI	GCWGC	3 cut(s)	68, 276, 564
Tsp45I	GTSAC	3 cut(s)	178, 307, 496
TspDTI	ATGAA	1 cut(s)	450
TspGWI	ACGGA	1 cut(s)	547
TspRI	CASTG	2 cut(s)	337, 642
VpaK11BI	GGWCC	1 cut(s)	211
XceI	RCATGY	2 cut(s)	92, 548
XspI	CTAG	2 cut(s)	165, 539

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.